Determining the bioavailability of contaminants and assessing the quality of sediments

Background, Aims and Scope  

Our study determined if and when an avoidance or attraction behavioural response would be displayed by Ilyanassa obsoleta when presented with a choice between harbour and reference sediments. Our goal was to develop a non-lethal approach that could be used in future assessments of the environmental quality of field sediments.     

50年黑龙江省大豆遗传改良的产量及品质变化

本研究针对黑龙江省过去50年推广的大豆品种产量及品质变化进行研究。结果表明,品种推广年代与产量之间表现显著的线性回归关系,产量呈逐年增加的趋势,平均每年提高1．27％。产量的提高与英数、英粒数、粒数及收获指数密切相关,而与百粒重关系不大。经过50年的遗传改良,大豆蛋白质和脂肪含量变化不大,且品种间变异幅度较小。R2期（盛花期）叶氮含量、单株叶氮量、比叶氮及LAI（叶面积指数）与产量及品质关系不大,但此时期干物质重与产量里负相关关系,生育前期的干物质积累对产量的贡献不大。     

Impacts of insect herbivores on rare plant populations

Population-level impacts of insect herbivory on rare and endangered plants are poorly understood, being frequently suggested but seldom quantified. We compiled 37 studies from the primary literature encompassing 35 rare plant species and at least 63 insect herbivore species, and assessed patterns in the effects of insect herbivores on rare plant populations and vital rates. Only three studies directly quantified effects of insect herbivory on population size or growth rate, with the vast majority instead extrapolating from vital rates to population size. Few studies (eight) studied herbivory experimentally, and feeding guilds other than seed predators have been relatively neglected. Estimates of population-level impacts vary extremely widely, but for many rare plants insect herbivores cause major reductions in survivorship or fecundity or can even drive local extinctions. Four studies documented positive (plant-) density dependence in insect attack, suggesting that herbivores may have a stabilizing influence on plant populations and thus may play a role in regulating rare plant population size. Most reported herbivores of rare plants are oligophagous or polyphagous, but monophagous herbivores of rare plants do exist, and there was no detectable difference in impact among specialization classes. Attack on rare plants by escaped biocontrol agents can sometimes have significant population-level effects, but such cases appear uncommon. Because insect herbivory can strongly suppress rare plant populations or vital rates, we need to know much more about what ecological and evolutionary factors determine the population-level impacts of insect herbivores. We suggest several ways in which the results of such research could inform conservation practices for rare plant species – for example, the possibility of different management regimes for plants under attack by monophagous, oligophagous, and polyphagous herbivores.     

The effect of short day treatments on containerized Douglas-fir morphology,physiology and phenology

The effect of short day treatments (blackout) on Douglas-fir (Pseudotsuga menziesii (Mirb.) Franco) container seedlings at the time of lift and following cold storage was investigated. Variables measured included height, root collar diameter (RCD), root growth capacity (RGC), photosynthetic efficiency after –18 °C freezing (PEF), and days to terminal bud break (DBB). From one to four blackout dormancy induction treatments were started on three dates (July 12, July 26, and August 10) with 10 or 20 d between multiple blackouts. Increasing the number of blackout treatments resulted in lower RCD, lower DBB in the late winter/early spring, and higher PEF in the early fall. Later blackout start dates decreased PEF in the early fall, and increased overall height and late fall RGC as compared to earlier blackout start dates. Nurseries growing Douglas-fir seedlings from coastal Pacific Northwest provenances should be aware that blackout regimes can decrease RGC in the late fall, and cause quicker dormancy release in the early spring. Coastal Douglas-fir can be lifted and planted in the early fall, when RGC and DBB are relatively high. If planting between February and April is necessary, seedlings given blackout should be cold stored in January to maintain an adequate level of dormancy, RGC and PEF.     

Randomly primed,strand-switching,MinION-based sequencing for the detection and characterization of cultured RNA viruses

RNA viruses rapidly mutate, which can result in increased virulence, increased escape from vaccine protection, and false-negative detection results. Targeted detection methods have a limited ability to detect unknown viruses and often provide insufficient data to detect coinfections or identify antigenic variants. Random, deep sequencing is a method that can more fully detect and characterize RNA viruses and is often coupled with molecular techniques or culture methods for viral enrichment. We tested viral culture coupled with third-generation sequencing for the ability to detect and characterize RNA viruses. Cultures of bovine viral diarrhea virus, canine distemper virus (CDV), epizootic hemorrhagic disease virus, infectious bronchitis virus, 2 influenza A viruses, and porcine respiratory and reproductive syndrome virus were sequenced on the MinION platform using a random, reverse primer in a strand-switching reaction, coupled with PCR-based barcoding. Reads were taxonomically classified and used for reference-based sequence building using a stock personal computer. This method accurately detected and identified complete coding sequence genomes with a minimum of 20× coverage depth for all 7 viruses, including a sample containing 2 viruses. Each lineage-typing region had at least 26× coverage depth for all viruses. Furthermore, analyzing the CDV sample through a pipeline devoid of CDV reference sequences modeled the ability of this protocol to detect unknown viruses. Our results show the ability of this technique to detect and characterize dsRNA, negative- and positive-sense ssRNA, and nonsegmented and segmented RNA viruses.     

Some effects of off-road vehicles and sheep grazing on lizard populations in the mojave desert

The effects of two environmentally disruptive activities were determined using the numbers and biomass of lizards. Sheep grazing reduces ground cover necessary for some lizard species. The use of vehicles on the desert also eliminates vegetation and adversely affects lizard populations.     

Predicting Protein Composition,Biochemical Properties,and Dough-Handling Properties of Hard Red Winter Wheat Flour by Near-Infrared Reflectance

Breadmaking quality in wheat is one of several considerations that plant breeders face when developing new cultivars. In routine breeding programs, quality is assessed by small-scale dough-handling and bake tests, and to some extent, by biochemical analysis of gluten proteins. An alternative, not yet fully examined, method for wheat flour quality assessment is near-infrared reflectance (NIR) spectrophotometry. The present study was performed on 30 genotypes of hard red winter wheat grown during two crop years at eight to nine locations in the Great Plains area of the United States. Biochemical testing consisted of measuring protein fractions from size-exclusion HPLC (M _r > 100k, M _r 25–100k, and M _r < 25k designated as glutenin, gliadins, and albumin and globulins, respectively), pentosan content, and SDS sedimentation volume. Dough-handling properties were measured on a mixograph and recorded as the time to peak dough development, the peak resistance, the width of the mixing curve, and the width of the curve at 2 min past peak. Partial least squares analyses on diffuse NIR spectra (1,100–2,498 nm) were developed for each constituent or property. When applied to a separate validation set, NIR models for glutenin content, gliadin content, SDS sedimentation volume, and mixograph peak resistance demonstrated reference vs. predicted correlations ranging from r = 0.87 to r = 0.94. Such models were considered sufficiently accurate for screening purposes in breeding programs. NIR spectra were responsive to each constituent or property at a level higher than expected from a correlation between the constituent or property and protein content (recognizing that protein content is modeled by NIR with high accuracy).     

Evaluation of aerobic bacteriologic culture of epidermal collarette specimens in dogs with superficial pyoderma

OBJECTIVE: To evaluate a method of aerobic bacteriologic culture of epidermal collarette specimens from dogs with superficial pyoderma and compare results with those for aerobic bacteriologic culture of abdominal skin specimens in healthy dogs. DESIGN: Prospective study. ANIMALS: 22 dogs with epidermal collarettes and 24 healthy dogs. PROCEDURE: Dry sterile cotton swabs were rolled across epidermal collarettes or hairless areas of abdominal skin in healthy dogs and submitted for aerobic bacteriologic culture. Hemolytic colonies of gram-positive-staining cocci were tested for catalase production, and if results were positive, a coagulase test was performed. Colonies with coagulase activity were tested for the ability to ferment mannitol. Antimicrobial susceptibility testing was performed on all Staphylococcus spp that were isolated. RESULTS: S. intermedius was isolated from collarettes in 18 of 22 dogs with superficial pyoderma but not from healthy dogs. Estimated sensitivity and specificity of the culture method were 81.8% and 100%, respectively. There were no significant differences in the ability to culture S. intermedius, the number of S. intermedius isolates without resistance to antimicrobials, and the number of S. intermedius isolates resistant to penicillin G when comparing dogs with superficial pyoderma for the first time and dogs with recurrent pyoderma, dogs that did or did not receive concurrent antimicrobials, and dogs with and without underlying allergic disease. CONCLUSIONS AND CLINICAL RELEVANCE: Bacteriologic culture of epidermal collarette specimens was a simple and reliable method for identification of S. intermedius in dogs with superficial pyoderma, regardless of history of pyoderma or current antimicrobial use.