Statistical Modelling of Neighbor Treatment Effects in Aquaculture Clinical Trials

In the design of clinical trials involving fish observed over time in tanks, there may be advantages in housing several treatment groups within the same tank. In particular, such “within-tank” designs will be more efficient than designs with treatment groups in separate tanks when substantial between-tank variability is expected. One potential problem with within-tank designs is that it may not be possible to include all treatments in one tank; in statistical terms this means that the blocks (tanks) are incomplete. In incomplete block designs, there may be a concern that the treatments present in the same tank (denoted here as “neighbors”) affect each other in their performance; thus the need for an assessment of neighbor effects. In this paper, we propose two statistical approaches to assess and account for neighbor effects. The first approach is based on a non-linear mixed model and the second involves cross-classified and multiple membership models. Both approaches are illustrated on simulated data as well as data from a clinical ISAV (Infectious Salmon Anaemia Virus) trial; corresponding computer code is available online.     

Recurrent selection using male sterility and hydroponic tiller culture in pedigree breeding of wheat

A procedure for recurrent selection based on the male sterility gene, Ms3, was implemented. To facilitate the production of large numbers of hybrid progeny, a simple hydroponic system was developed in which male‐sterile tillers cut at the flowering stage can be pollinated and maintained for about 8 weeks‐long enough to produce a large quantity of viable hybrid seeds. The recurrent selection steps were integrated with a pedigree breeding programme employing different selection cycles for male and female plants. F₁ female plants are subjected to a single screening for seedling resistance. In addition to F₁ seedling screening, F₂‐F₄ male families are field‐selected for disease resistance, agrotype and quality in a pedigree programme before being used in crosses.     

Impact of co-infection with Lepeophtheirus salmonis and Moritella viscosa on inflammatory and immune responses of Atlantic salmon (Salmo salar)

This study was conducted to determine the effects of a co-infection with Moritella viscosa at different exposure levels of sea lice Lepeophtheirus salmonis in Atlantic salmon (Salmo salar). M. viscosa (1.14 × 10⁶ cfu/ml) was introduced to all experimental tanks at 10 days post-lice infection (dpLs). Mean lice counts decreased over time in both the medium lice co-infection (31.5 ± 19.0 at 7 dpLs; 16.9 ± 9.3 at 46 dpLs) and high lice co-infection (62.0 ± 10.8 at 7 dpLs; 37.6 ± 11.3 at 46 dpLs). There were significantly higher mortalities and more severe skin lesions in the high lice co-infected group compared to medium lice co-infected group or M. viscosa-only infection. Quantitative gene expression analysis detected a significant upregulation of genes in skin from the high lice co-infection group consistent with severe inflammation (il-8, mmp-9, hep, saa). Skin lesions retrieved throughout the study were positive for M. viscosa growth, but these were rarely located in regions associated with lice. These results suggest that while M. viscosa infection itself may induce skin lesion development in salmon, co-infection with high numbers of lice can enhance this impact and significantly reduce the ability of these lesions to resolve, resulting in increased mortality.     

EFFECT OF SEVOFLURANE ANESTHESIA AND BLOOD DONATION ON THE SONOGRAPHIC APPEARANCE OF THE SPLEEN IN 60 HEALTHY CATS

The aims of this prospective study were to describe the normal sonographic size and appearance of the feline spleen, and to test effects of sevoflurane anesthesia and blood collection on sonographic characteristics. Sonographic evaluations were performed in 60 healthy blood donor cats prior to anesthesia and blood collection (baseline), after anesthesia induction, after completion of blood collection while under anesthesia, and 7–10 days after blood collection. Transverse sonographic images of the splenic mid‐body were made. Splenic height, width, cross‐sectional area, echogenicity relative to the left renal cortex, and echotexture were recorded. Height, width, and cross‐sectional area were compared across time periods using linear‐mixed effects models. Holm's method was applied to adjust for multiplicity and control the overall Type 1 error rate at α = 0.05. Normal transverse sonographic splenic measurements (mean ± standard deviation) at baseline were: height 8.2 ± 1.4 mm; width 26.7 ± 4.4 mm; and CSA 1.6 ± 0.5 cm². While there were statistically significant differences in splenic height, width, and cross‐sectional area after sevoflurane anesthesia and/or blood collection, differences were of low magnitude. The spleen was diffusely homogenous and subjectively isoechoic or mildly hyperechoic relative to the left renal cortex. In 77% of castrated male cats, the spleen was isoechoic to the left renal cortex. We conclude that sevoflurane anesthesia and blood donation do not subjectively alter splenic dimensions, echogenicity and echotexture in normal cats.     

Owner perceptions of radiotherapy treatment for veterinary patients with cancer

Veterinary clients may have trepidation about treating their pet with radiotherapy because of concerns about radiation side effects or repeated anaesthetics. The purpose of this study is to assess whether owners' attitudes towards veterinary radiotherapy, including concerns over side effects, change during the course of treatment, and whether radiotherapy was perceived to affect pets' quality of life (QOL). A prospective cohort study of clients from 2012 to 2015 was performed. Pets received palliative or definitive radiotherapy for various tumours. Clients completed questionnaires before, during and after radiotherapy. Questions assessed owner preconceptions before treatment, including side effect expectations, actual side effects experienced and overall satisfaction with the process. In addition, at each time point, the owners assessed their pet's QOL using a simple numerical scale. Forty‐nine patients were included. After completing treatment, owners were significantly less concerned about potential side effects of radiotherapy (P < 0.001), side effects associated with repeat anaesthetics (P < 0.001), and about radiotherapy in general (P < 0.001). QOL did not show a significant change at any point during or after treatment. Following treatment, 94% reported that the experience was better than expected and 100% supported the use of radiotherapy in pets. This is the first prospective study evaluating client attitudes and satisfaction before and after radiotherapy treatment in pets. The results indicate that radiotherapy is well tolerated, and the anxiety associated with radiotherapy is significantly alleviated after experiencing the process. These results will help veterinarians allay client concerns, and will hopefully lead to an increase in clients pursuing radiotherapy in pets.     

Aloe ferox leaf gel phytochemical content, antioxidant capacity, and possible health benefits

This study identified, quantified, and compared the phytochemical contents and antioxidant capacities of Aloe ferox lyophilized leaf gel (LGE) and 95% ethanol leaf gel extracts (ELGE) using GC-MS and spectrophotometric methods. Analytically, 95% ethanol is less effective than ethyl acetate/diethyl ether or hexane (in the case of fatty acids) extractions in separating phytochemicals for characterization purposes. However, although fewer compounds are extracted in the ELGE, they are approximately 345 times more concentrated as compared to the LGE, hence justifying ELGE use in biological efficacy studies in vivo. Individual phytochemicals identified included various phenolic acids/polyphenols, phytosterols, fatty acids, indoles, alkanes, pyrimidines, alkaloids, organic acids, aldehydes, dicarboxylic acids, ketones, and alcohols. Due to the presence of the antioxidant polyphenols, indoles, and alkaloids, the A. ferox leaf gel shows antioxidant capacity as confirmed by ORAC and FRAP analyses. Both analytical methods used show the non-flavonoid polyphenols to contribute to the majority of the total polyphenol content. Due to its phytochemical composition, A. ferox leaf gel may show promise in alleviating symptoms associated with/or prevention of cardiovascular diseases, cancer, neurodegeneration, and diabetes.     

Identification of three novel mycoplasma species from ostriches in South Africa

Mycoplasmas have been implicated in certain clinical syndromes in ostriches and are associated with upper respiratory tract infections. As these infections result in production losses, they are of considerable economic importance to the South African ostrich industry. Although poultry mycoplasmas have been shown to infect ostriches, the existence of unique ostrich-specific mycoplasmas has been suggested. In this study, mycoplasmas were isolated from ostriches in the Klein Karoo, Central Karoo and Garden Route areas of the Western and Northern Cape Provinces of South Africa and identified using 16S rRNA gene sequencing. These sequences indicated that ostriches in these areas carry three unique mycoplasmas and were not infected with chicken mycoplasmas. Phylogenetic analysis of the 16S rRNA sequences of the three isolated ostrich mycoplasmas showed them to be quite divergent and to fall into two distinct phylogenetic groupings. Unique sequences within the 16S rRNA gene of the ostrich mycoplasmas were subsequently used for the development of specific primers for the detection and diagnosis of mycoplasma infections in ostriches. Chickens kept in close proximity to infected ostriches were not infected with these ostrich mycoplasmas.     

Elephant- and human-induced changes to dung beetle (Coleoptera: Scarabaeidae) assemblages in the Maputaland Centre of Endemism

High African elephant stocking rates in nature reserves in southern Africa have been shown to have significant impacts on vegetation structure and diversity. However, the direct and indirect effects of elephants on fauna, particularly invertebrates, remain poorly known. The Maputaland Centre of Endemism, an area of southern Mozambique and northern KwaZulu-Natal in South Africa, is undergoing rapid rates of habitat conversion. Sand Forest, the rarest vegetation type in the Centre, is threatened by human disturbance outside of protected areas and by elephant browsing pressure in Tembe Elephant Park, one of the few protected areas for Sand Forest. Here we examine the effects of elephant- and human-induced disturbance to Sand Forest on a functionally important component of invertebrate diversity, i.e. the dung beetle fauna. The dung beetle assemblage associated with elephant-disturbed Sand Forest was transitional between undisturbed Sand Forest and Mixed Woodland, whereas that associated with human disturbance was markedly different to either habitat type. Differences are attributed to a change in habitat structure under both disturbance types, as well as to changes in the quality and distribution of dung under human disturbance. Therefore, grazing impacts by elephant not only affect plant diversity, but also implement changes in invertebrate fauna. The maintenance of the integrity of the Sand Forest–Mixed Woodland matrix is considered critical for biodiversity conservation in the Maputaland Centre of Endemism. Management of elephant populations, as well as the protection of sufficient Sand Forest inside conservation areas must, therefore, necessarily form part of the conservation strategy for the Centre.