Molecular characterization of the VP1 gene of a Mexican isolate of infectious pancreatic necrosis virus

The presence of infectious pancreatic necrosis virus (IPNV) in salmonids predominantly produces a high mortality rate in first-feeding fry. Genomic analysis of the vp2 gene sequence is most commonly used to determine the genetic diversity of IPNV isolates. Recently, information obtained from the vp1 gene allowed for efficient analysis of the genetic diversity of IPNV. In this study, the vp1 gene from a Mexican IPNV isolate was characterized and compared with IPNV isolates from Europe, North America, and Asia. The results indicate that the Mexican isolate is most closely related genetically to the 2310 strain from Spain.     

Azospirillum inoculation and nitrogen fertilization effect on grain yield and on the diversity of endophytic bacteria in the phyllosphere of rice rainfed crop

We assessed the Azospirillum inoculation and N-fertilization effect on grain yield and on the phyllosphere endophytic diversity of nitrogen-fixing bacteria in a rice rainfed crop. We used cultivation-based techniques and cultivation-independent methods involving PCR-16S rRNA and denaturing gradient gel electrophoresis (DGGE). In general, we observed that grain yield was improved when inoculated with Azospirillum (depending on the genotype) and/or fertilized with urea. A similar behavior was observed in total N-content in grain and the MPN determination, as the highest values occurred when seeds were inoculated with A. brasilense REC3 (S1) than with A brasilense 13-2C (S2). A positive nitrogenase activity and PCR-nifH amplification suggests that the bacteria associated to inner tissues of rice phyllosphere could have contributed to the different N-contents detected. The bacterial diversity, observed in the number and intensity of DGGE profiles, showed a higher number of bands when total DNA was obtained using only CTAB than with CTAB + PVP. The DGGE profiles revealed great stability in the dominating bands, which presumably represent numerically dominant species. Application of A. brasilense strains as inoculants did not influence the dominant members of the endophytic microbial communities in the phyllosphere, but improved N-content and production of rainfed rice crop.     

Variability of three regional sources of germplasm of Tejocote (<Emphasis Type="Italic">Crataegus</Emphasis> spp.) from central and southern Mexico

Tejocote (Crataegus spp.) is a genus of fruit-bearing trees distributed widely throughout Mexico; 13 species are reported for the north and central zones and two or more species may be present in southern Mexico. Accessions of this genus are safeguarded in the Germplasm Bank of Tejocote at the Autonomous University of Chapingo, mainly from three regional sources, i.e. the states of Puebla, Mexico, and Chiapas, including five different species that belong to series Mexicanae and series Crus-galli. They can be morphologically characterized by leaves from different shoot types, flowers and fruits. Multivariate statistical methods were used to elucidate patterns of variation in each of these regional sources. The sources displayed very low intra-source variability. The source from Chiapas showed significant statistical differences in all morphological variables evaluated, as a result, this genetic pool is considered as different from the other two sources. The sources from the states of Puebla and Mexico only differed by 22.79% (with P ≤ 0.05), and thus they could be considered as components of a single genetic pool. The most highly discriminant variables were from the leaf, such as basal angle, petiole length/major axis length ratio, minor axis length/major axis length ratio, and number of veins. Electronic supplementary material  The online version of this article (doi:) contains supplementary material, which is available to authorized users.     

Specificity dependence between serological tests for diagnosing bovine brucellosis in Brucella-free farms showing false positive serological reactions due to Yersinia enterocolitica O:9

When brucellosis false positive serological reactions happen in cattle, the serial use of pairs of specificity-correlated serological tests (rose bengal, complement fixation, competitive ELISA) results in specificities lower than expected. In this situation, highly specific tests, such as the indirect ELISA used alone, may be more adequate than serial testing.     

Milk yield did not decrease in large herds of high-producing Holstein cows in semi-arid climate of Mexico

This study aimed to determine the trends in milk production, fertility, temperature-humidity index (THI), and herd size in dairy herds from the Laguna region in northern Mexico. Records of 16 dairy herds of Holstein cows from January 2002 to December 2016 were used. Milk production was categorized in low and high levels. Milk production and fertility were analyzed using generalized equation estimation procedures by a model of repeated measures that included the effect of year, month, and productive level, an interaction for month × productive level, and herd effect was nested in productive level. For THI, a generalized linear model that included the effects of year and month was used. Dairy herds with high levels of milk production yielded more milk than those with low levels (P?<?0.001). Milk production in 2002 and 2016 was 27.4?±?0.6 and 32.3?±?0.7 L/cow/day, respectively. Fertility fluctuated throughout the study. Dairy herds with high levels of milk production recorded higher fertility than those with low levels (P?<?0.001). From October to April, THI was <?70, whereas it was >?73 from May to September, indicating that cows were in heat stress (20 h/day). The median herd size was 995 and 2569 cows in 2002 and 2016, respectively. In conclusion, in large herds, milk production increased over the years of study, whereas fertility showed a wave cycle; nonetheless, when THI was >?73, both milk production and fertility decreased.

     

Alterations of domains in the plasmatic membrane due to damages of the perinuclear theca of pig preserved spermatozoa

Samples of semen from 12 pigs, three from Yorkshire, Landrace, Duroc and Mexican Hairless each where obtained to study cryopreservation methods. Three stages of boar semen cryopreservation were evaluated: none (fresh stage), cooling at 5 degrees C and freezing at -196 degrees C then thawing to 56 degrees C for 12 sec. Perinuclear theca damage and domain alterations were selected as indices of seminal quality, as measured by electronic and fluorescence microcopy, respectively according to two lineal models considering by separately the effect of semen preservation and breed. Integrity and absence of perinuclear theca significantly (p < 0.001) decreased and increased, respectively according to a decrease in temperature of cryopreservation, from 87.4 to 58.8% and from 0.8 to 26.2%, respectively. This same significant (p < 0.001) effect was found for acrosomal and post-acrosomal membrane distribution of domains, from 92.1 to 76.8% and from 3.1 to 13.1% in this same order. Slight but highly significant (p < 0.001) differences were observed when theca integrity was evaluated as affected by breed, with highest and lowest values for Yorkshire and Pel6n Mexicano pigs, respectively. No breed effect was encountered for presence of acrosomal domains. A strong interdependence was found between perinuclear theca damage and domain distribution. In this connection, a highly significant (p < 0.001) positive, interdependence was observed between the theca damage and acrosomal domain (r = 0.87), while this same relationship was although highly significant (p < 0.001), negative in nature for equatorial and post-acrosonal domains (r = -0.77 and -0.85, respectively). This experiment confirmed that cryopreservation methods may severely affect semen quality of pigs and that genotype may further influence these same indices. More research is needed for improving methods of preservation of pig semen quality, from the point of view of perinuclear theca and domain characteristics of spermatozoa.     

Removal of Indigo Blue in Aqueous Solution Using Fe/Cu Nanoparticles and C/Fe–Cu Nanoalloy Composites

Actually, there is a growing interest in finding efficient low-cost materials that allow the removal of chemical substances from water in order to decrease the environmental impact. The use of nanoscale systems is a new area of investigation for the elimination of polluting agents from water among other useful applications in science and technology. In this work, removal of indigo blue in water solutions has been evaluated using Fe/Cu nanoparticles and composites of C/Fe–Cu nanoalloy. The first composite was using carbon obtained by pyrolysis of sewage sludge with Fe/Cu nanoparticles (MCL-NP); the second one was made with commercial activated carbon and Fe–Cu nanoparticles (CAC-NP). Synthesis of materials were carried out by the sodium borohydride reduction of FeSO₄?7H₂O and CuSO₄?5H₂O aqueous mixture. Batch adsorption and isotherm experiments were carried out in order to know the behavior of each adsorbent material employed. The experimental data were adjusted to Langmuir, Freundlich, and BET models.     

Central nervous system extracellular matrix changes in a transgenic mouse model of bovine spongiform encephalopathy

Bovine spongiform encephalopathy (BSE) is a transmissible spongiform encephalopathy characterised by accumulation of resistant prion protein (PrP^BSE), neuronal loss, spongiosus and glial cell proliferation. In this study, properties of the extracellular matrix (ECM) were investigated in boTg110 transgenic mice over-expressing the bovine cellular prion protein (PrP^c) and infected with BSE. Using immunohistochemistry with Wisteria floribunda agglutinin as a specific marker for perineuronal nets (PNNs) and antibodies against aggrecan and hyaluronic acid binding protein, loss of ECM was correlated with PrP^BSE accumulation and activation of astrocytes and microglia. PrP^BSE accumulation and glial cell activation were detected from the earliest stages of the disease and increased in the terminal stages. Decreases in PNNs, aggrecan and hyaluronic acid were observed only in the terminal stages and correlated with the distribution of PrP^BSE and activated glial cells. This study suggests that the loss of PNNs, aggrecan and hyaluronic acid is a consequence of PrP^BSE accumulation. Degradation of ECM in BSE may be due to secretion of degradative enzymes by activated glial cells.     

Determining paternity in polyploids: Hexaploid simulation studies

The breeding of new sweet potato varieties is a highly inefficient process, confounded by incompatibility, poor fertility, open-pollination and hexaploidy. Upwards of 12–20 lines are combined in open pollinated nurseries based on horticulturally important characteristics. After several years of selection most progeny can be traced back to just 3 or 4 maternal lines. A method that would identify the paternal parent of superior progeny would enable breeders to combine parents that exhibit superior combining ability in more efficient, smaller nurseries. The objective of this work is to explore by means of computer simulation the application of genealogy reconstruction techniques on hexaploid individuals based on co-dominant marker data. The progeny obtained from each female parent is categorically assigned to each male with non-zero exclusion probability based on its paternity likelihood. Computer simulations show that even with polysomic segregation types, it is possible to discriminate between putative parents with few errors or mis-assignments. The number of loci scored for a 10 parent population should not be less than 20 in the case of 3 alleles per locus, and no more than 10 loci for a five allele model. An increment in the number of alleles or loci increases the discriminatory power with the number of alleles yielding a far more important effect than the number of loci. This study also demonstrates the feasibility of using simulations to determine the minimum requirements, i.e. number of loci to be genotyped, for unambiguous parentage allocation in polyploids. This revised version was published online in July 2006 with corrections to the Cover Date.