Comparative analyses of canine distemper viral isolates from clinical cases of canine distemper in vaccinated dogs

Sequence and phylogenetic analyses of three isolates of canine distemper virus (CDV) isolated from three dogs with a vaccination history were compared with the same analyses of vaccine virus isolated from a vaccine used for dogs. The three dogs showed clinical signs of a recent major type of CD in Japan, including oculonasal discharge and diarrhea, and pathological findings including non-suppurative encephalitis, pneumonia, mild gastroenteritis and lymphoid depletion. Inclusion bodies were in the stomach without inflammation and encephalitis was without clinical signs. One of the highest titers of CDV in different organs of the three dogs was commonly systemic lymphatic organs, including the spleen, lymph nodes and tonsils. New isolates of CDV joined to the clades of the Asia 1 group that is far from the vaccine group. These results surely indicate that wild strains of CDV from dogs with a vaccination history were not reversed vaccine virus, and that the dogs showed characteristics of recent CD in Japan.     

Vanillin production from native softwood lignin in the presence of tetrabutylammonium ion

Vanillin is one of the industrially important compounds that can be produced from lignin. This study presents production of vanillin and vanillic acid (oxidized form of vanillin) through aerobic oxidation of Japanese cedar (Cryptomeria japonica) at 120 °C for 72 h in aqueous alkali solutions with several Bu₄N⁺ and OH^? concentrations (1.25, 2.50, and 3.75 mol/L), where Bu₄N⁺ is an enhancer of the vanillin formation reported in our previous study. The concentrations of Bu₄N⁺ and OH^? were adjusted by the additions of Bu₄NCl and solid NaOH into the base medium Bu₄NOH·30H₂O, which forms 1.25 mol/L aqueous solution of Bu₄NOH at the elevated temperature. Vanillin and vanillic acid were produced with the maximum yields of 21.0 and 1.7 wt% (lignin-base), respectively, at the 1.25 mol/L Bu₄N⁺ and 3.75 mol/L OH^? concentrations. This vanillin yield is close to that obtained by the alkaline nitrobenzene oxidation (26.5 wt%), indicating significantly high selectivity of our lignin degradation with Bu₄N⁺ toward vanillin formation. We also proposed a novel Bu₄NOH·30H₂O-free reaction medium, where Bu₄NOH·30H₂O as the base medium were substituted with an aqueous solution of Bu₄NCl and NaOH to avoid using expensive Bu₄NOH·30H₂O. The treatment of the Japanese cedar with this alternative medium exhibited the moderately decreased vanillin yield of 14.6 wt%, which is, however, much higher than the vanillin yield obtained with a simple 1.25 mol/L NaOH solution.     

Genetic diversity of <Emphasis Type="Italic">Ralstonia solanacearum</Emphasis> strains causing bacterial wilt of solanaceous crops in Myanmar

In 2013 and 2014, an extensive survey of bacterial wilt in Myanmar was performed, and 70 strains of Ralstonia solanacearum (Rs) were collected from wilting plants of tomato, potato, chili and eggplant. Myanmar Rs strains were characterized by traditional and molecular methods. Polymerase chain reaction (PCR) test using Rs-specific primer set amplified one specific band (281-bp) from template DNA of all strains. Pathogenicity tests on the four solanaceous plants differentiated the strains into six pathogenic groups. Biovar determination tests showed that biovar 3 strains predominated (63%) among all Rs strains. Biovar 4 strains (7%) were obtained from both tomato and chili strains, whereas biovar 2 (30%) strains were isolated only from potato. Multiplex-PCR analysis indicated that tomato, eggplant and chili strains belonged to phylotype I, whereas potato strains comprised phylotype I and phylotype II. Strains in phylotype I, which was suggested to have originated from Asia, were the most prevalent in all surveyed areas. Phylogenetic analysis based on the endoglucanase (egl) gene sequences revealed that Myanmar strains partitioned into two major clusters that corresponded to phylotype I and II. Strains in phylotype I were further divided into seven subclusters, each corresponding to a distinct sequevar (15, 17, 46, 47, 48, unknown 1 or unknown 2). All strains in phylotype II belonged to sequevar 1. This is the first comprehensive report of the presence of diverse Rs strains in Myanmar.     

A case study of infection of rice roots by deleterious fungi and minor pathogenic<Emphasis Type="Italic"> Pythium</Emphasis> species in a paddy field

Roots of rice plants grown in paddy fields in a transplant culture system were collected seven times between 8 and 22 weeks after transplanting, for two crop seasons. Rice seedlings grown in a potting medium amended with the collected roots were significantly shorter than those grown in the same medium either without the addition of the roots or amended with pasteurized, collected roots indicating that seedlings were inhibited by heat-labile microorganisms on the collected rice roots. Ninety-five and 172 pure cultures of Pythium spp. and fungi, respectively, were isolated from the rice roots collected 5 or 7.5 weeks after transplanting in the fields. Among these microorganisms, Pythium aristosporum inhibited seedling growth in greenhouse experiments, and Acremonium sp., Alternaria sp., Epicoccum nigrum, Fusarium sp., Massarina sp., Penicillium spp., Rhinocladiella sp., Stemphylium sp., Trichocladium sp., and several unidentified fungi inhibited seminal root growth in in vitro experiments. These microorganisms might be involved in the inhibition of seedling growth in soils amended with the rice roots collected from the paddy field. Thus, roots of rice plants at the middle stage of growth transplanted into paddy fields can harbor pathogenic or deleterious fungi or Pythium sp(p). The effects of these microorganisms on rice growth in paddy fields are discussed.     

Isolation of Encephalitozoon cuniculi using primary tissue culture techniques from a rabbit in a colony showing encephalitozoonosis

Encephalitozoon spores were isolated in a primary tissue culture of the kidneys from an encephalitozoonosis-suspected rabbit in a municipal zoo in Hokkaido. The isolated spores were morphologically characteristic of microsporidial ones in chromotrope stain, and proven to be E. cuniculi by a polymerase chain reaction (PCR) with a species-specific primer set and by direct DNA sequencing of the PCR products.     

Sequence homogeneity of the ψserA-trmU-tufB-secE-nusG-rplKAJL-rpoB gene cluster and the flanking regions of ‘Candidatus Liberibacter asiaticus’ isolates around Okinawa Main Island in Japan

In Japan and Southeast Asia, ‘Candidatus Liberibacter asiaticus’ (Las) is the dominant causal agent of citrus greening (huanglongbing) disease. Using PCR techniques, we determined the 11168-nucleotide sequence of the ψserA-trmU-tufB-secE-nusG-rplKAJL-rpoB gene cluster and the flanking regions for 51 Japanese, four Taiwanese, four Indonesian, and three Vietnamese isolates of Las. The sequence is identical in 62 isolates collected from Japan, Taiwan, Indonesia, and Vietnam, except for nucleotide substitutions at 11 positions. Some Las isolates from Sakishima Islands near Taiwan had unique nucleotide mutations, but all Las isolates around Okinawa Main Island were homologous. On the basis of the pattern of single nucleotide polymorphisms (SNPs) of the 11 nucleotide substitutions, the 62 Las isolates from Japan, Taiwan, Indonesia, and Vietnam could be divided into 12 pattern groups, and the 51 Japanese isolates consisted of six patterns. The results suggested that one unique genetic group is dominant around Okinawa Main Island, whereas several different are commonly distributed around islands near Taiwan.     

Features of the AFFRC model for evaluating the relationship between the water cycle and rice production

This paper introduces the Agriculture, Forestry and Fisheries Research Council of Japan (AFFRC) model, an integrated model that predicts future rice production in the Mekong River basin by taking into account the effect of global warming on both the water cycle and the rice economy. The model focuses especially on the water balance of paddy fields for different farmland water use systems. We defined six categories of irrigated paddies and three categories of rain-fed paddies on the basis of their systems of water usage. We included a process-based model to predict future rice production, accounting for daily changes in available water resources such as precipitation. Many models of crop production treat rice in the same way as other crops; the particular characteristics of rice farming are considered in more detail in our model. Our results show that it is possible to estimate future rice production in the Mekong River basin by taking into account changes in available water, and to model the resultant effects on the grain market.     

Apparent digestibility of soybean coproducts in extruded diets for Nile Tilapia,Oreochromis niloticus

Soybean coproducts are important protein sources in aquaculture because of their amino acid profile. Tilapia can be reared on soybean coproducts as the only source of dietary protein without compromising growth. This study estimated apparent digestibility coefficients for five soybean coproducts for juvenile Nile tilapia, Oreochromis niloticus, fed with extruded diets. A reference diet and test diets consisting of 70% reference diet and 30% coproduct ingredient were formulated, along with 5.0 g kg^?1 chromic oxide (Cr₂O₃) as a marker. Apparent digestibility coefficients (ADC) for dry matter (ADCDM), gross energy (ADCGE) and crude protein (ADCCP) for soybean coproducts were estimated as 84.2–88.4%, 86.9–91.1% and 96.8–97.9%, respectively. ADCDM and ADCCP values did not vary among the ingredients, but low‐protein soybean meal exhibited lower ADCGE values than did soybean protein concentrate. ADCs of all amino acids were >95%, and mean ADCs for amino acids were similar to the values observed for ADCCP. Soybean coproducts had good nutritional value in extruded diets fed to tilapia. Methionine, histidine and valine were the limiting amino acids in all evaluated ingredients.     

Suitability of Japanese codling as a raw material for surimi-based products revealed by primary sequence analysis of myosin heavy chain and thermal gel properties

Fisheries Science - Complementary DNA encoding a part of myosin heavy chain was cloned from fast skeletal muscle of Japanese codling Physiculus japonicus. Japanese codling, a frequent catch off the...