Differences in Lead Bioavailability Between a Smelting and a Mining Area

Soils and housedusts were collected from three areas of Pribram,an historic metal mining and smelting town in the Czech Republic. The main objectives of the study were: (i) to assessthe influence of physico-chemical form, particle size, soilproperties and contaminant source on Pb bioavailability andexposure risk; (ii) compare the Pb bioavailability data obtainedfrom the mining and smelting areas and assess whether anydifferences observed could be attributed to the factors thoughtto exert an influence. Lead concentrations were highest in thesmelter area. Mining area garden soils also contained elevatedPb concentrations. Solubility of housedust Pb in 0.12 M HCl (asurrogate for stomach acid) was similar in all study areas andwas similar to values reported in the literature. However, 0.12M HCl solubility of garden soil Pb was low in the mining areacompared to the other study areas and compared to other urbanareas. Blood Pb concentrations were also relatively low in themining area compared to the other study areas and the reducedsoil Pb solubility observed in this area was suspected as aninfluencing factor. However, exposure pathways may also beimportant in explaining the differences observed.     

Synthesis and fungicidal activity of N-2-(3-methoxy-4-propargyloxy) phenethyl amides. Part 3: stretched and heterocyclic mandelamide oomyceticides

Novel analogues of mandipropamid have been designed and prepared. The synthetic approach to these stretched and heterocyclic mandelamides is outlined. Biological data demonstrate their high efficacy against important plant diseases like tomato and potato late blight (Phytophthora infestans De Bary) and grape downy mildew (Plasmopara viticola Berliner & de Toni). Structure-activity relationship studies are discussed.     

Molecular and phylogenetic analysis of the H5N1 avian influenza virus caused the first highly pathogenic avian influenza outbreak in poultry in the Czech Republic in 2007

On 19th July 2007 re-occurrence of the H5N1 highly pathogenic avian influenza (HPAI) virus was noticed in Europe. The index strain of this novel H5N1 lineage was identified in the Czech Republic where it caused historically the first HPAI outbreak in commercial poultry. In the present study we performed molecular and phylogenetic analysis of the index strain of the re-emerging H5N1 virus lineage along with the Czech and the Slovak H5N1 strains collected in 2006 and established the evolutionary relationships to additional viruses circulated in Europe in 2005-2006. Our analysis revealed that the Czech and the Slovak H5N1 viruses collected during 2006 were separated into two sub-clades 2.2.1 and 2.2.2, which predominated in Europe during 2005-2006. On the contrary the newly emerged H5N1 viruses belonged to a clearly distinguishable sub-clade 2.2.3. Within the sub-clade 2.2.3 the Czech H5N1 strains showed the closest relationships to the simultaneously circulated viruses from Germany, Romania and Russia (Krasnodar) in 2007 and were further clustered with the viruses from Afghanistan and Mongolia circulated in 2006. The origin of the Czech 2007 H5N1 HPAI strains was also discussed.     

Distribution of Pseudomonas populations harboring phlD or hcnAB biocontrol genes is related to depth in vineyard soils

The abundance and population structure of pseudomonads in soils collected from long-(1006 years) and short-(54 years) term grapevine monocultures in Switzerland were examined across five soil horizons within the 1.20-1.35 m range. Soil samples were baited with grapevine, and rhizosphere pseudomonads containing the biocontrol genes phlD (2,4-diacetylphloroglucinol synthesis) and/or hcnAB (hydrogen cyanide synthesis) were analyzed by MPN-PCR. The numbers of total, phlD⁺ and hcnAB⁺ pseudomonads decreased with depth by 1.5-2 log (short-term monoculture) and 3-3.5 log (long-term monoculture). In addition, the percentages of phlD⁺ (except in short-term monoculture) and hcnAB⁺ pseudomonads were also lower in deeper horizons. RFLP-profiling of phlD⁺ and hcnAB⁺ pseudomonads revealed three phlD and twelve hcnAB alleles overall, but the number of alleles for both decreased in relation to depth. The only phlD allele found in deeper horizons was also found in topsoil, whereas one hcnAB allele (k) found in deeper horizons in long-term monoculture was absent in the topsoil. This suggests that certain Pseudomonas ecotypes are adapted to specific depths. Four hcnAB alleles enabled discrimination between monocultures. We conclude that soil depth is a factor selecting phlD and hcnAB genotypes, and that the allelic diversity of the two biocontrol genes decreases with depth.     

Isolation and computer analysis of the 5'-regulatory region of the seed storage protein gene from buckwheat (Fagopyrum esculentum Moench)

Using the modified rapid amplification of cDNA ends (5'-RACE) approach, a fragment containing the 955 bp long 5'-regulatory region of the buckwheat storage globulin gene (FeLEG1) has been amplified from the genomic DNA of buckwheat. The entire fragment was sequenced, and the sequence was analyzed by computer prediction of cis-regulatory elements possibly involved in tissue-specific and developmentally controlled seed storage protein gene expression. The promoter obtained might be interesting not only for fundamental research but also as a useful tool for biotechnological application.     

A kinetic framework for a mammalian RNA polymerase in vivo

We have analyzed the kinetics of assembly and elongation of the mammalian RNA polymerase I complex on endogenous ribosomal genes in the nuclei of living cells with the use of in vivo microscopy. We show that components of the RNA polymerase I machinery are brought to ribosomal genes as distinct subunits and that assembly occurs via metastable intermediates. With the use of computational modeling of imaging data, we have determined the in vivo elongation time of the polymerase, and measurements of recruitment and incorporation frequencies show that incorporation of components into the assembling polymerase is inefficient. Our data provide a kinetic and mechanistic framework for the function of a mammalian RNA polymerase in living cells.     

Bacterial sex: playing voyeurs 50 years later

The concept of chromosomes with a ring structure was born during the early studies of bacterial sexuality, and the discovery of fertility factors- episomes or plasmids-provided much later the key tools for gene cloning and biotechnology. But the plasmid-mediated transfer of antibiotic and other resistances, as well as pathogenicity, has served bacteria well in their own adaptive evolution.     

Changes in Mercury Deposition in a Mining and Smelting Region as Recorded in Tree Rings

The adsorption of lead onto date palm fibers (palm fibers) and leaf base of palm (petiole) has been examined in aqueous solution by considering the influence of various parameters such as contact time, solution pH, adsorbent dosage, particle sizes, ionic strength, and temperature. The adsorption of Pb(II) increased with an increase of contact time. The optimal range of pH for Pb(II) adsorption is 3.0?C4.5. The linear Langmuir and Freundlich models were applied to describe the equilibrium isotherms, and both models fitted well. The monolayer adsorption capacity of Pb(II) on palm fibers and petiole was found as 18.622 and 20.040 mg/g, respectively, at pH 4.5 and 25°C. Dubinin-Radushkevich (D-R) isotherm model was also applied to equilibrium data. The mean free energy of adsorption (2.397 and 4.082 kJ/mol) onto palm fibers and petiole, respectively, may be carried out via physisorption mechanism. Pseudo-first-order rate equation and pseudo-second-order rate equation were applied to study the adsorption kinetics. In comparison to first-order kinetic model, pseudo-second-order model described well the adsorption kinetics of Pb(II) onto palm fibers and petiole from aqueous solution. From the results of the thermodynamic analysis, Gibbs free energy ??G, enthalpy change ??H, and entropy ??S were determined. The positive value of ??H suggests that interaction of Pb(II) adsorbed by palm fibers is endothermic. In contrast, the negative value of ??H indicates that interaction of Pb(II) ions by petiole is exothermic. The negative value of ??G indicates that the adsorption of Pb(II) ions on both palm fibers and petiole is a spontaneous process.     

De novo formation of a subnuclear body

The mammalian cell nucleus contains structurally stable functional compartments. We show here that one of them, the Cajal body (CB), can be formed de novo. Immobilization on chromatin of both CB structural components, such as coilin, and functional components of the CB, such as the SMN complex, spliceosomal small nuclear ribonucleoproteins (RNPs), small nucleolar RNPs, and small Cajal body-specific RNPs, is sufficient for the formation of a morphologically normal and apparently functional CB. Biogenesis of the CB does not follow a hierarchical assembly pathway and exhibits hallmarks of a self-organizing structure.