Comparative genomic hybridization in detection of DNA changes in canine lymphomas

In this study, chromosomal imbalances in tumor tissues (lymphomas) and nucleotide changes in tumor suppressor TP53 were studied in a Bernese Mountain dog bitch and a cross breed bitch. Using comparative genomic hybridization, numerous chromosomal rearrangements were detected, which indicated the heterogeneity in tumor growth: in the cross breed bitch, a deletion on the chromosome 9, and duplications on chromosomes 5, 8 and 17 have been found. In the Bernese Mountain Dog bitch, losses on chromosomes 1, 5, 8, 12, 18, 22, 27, 29 and gains on chromosomes 1, 2, 9, 11, 15, 16, 18, 20, 23, 24, 25, 28, 29, 30, 34, 36, 37 and 38 were identified. With the sequencing of the TP53 gene, one silent mutation, transition A/G at position 138 in exon 5 was detected, without changing the amino acid.     

A matter of time: self-regulated tree regeneration in a natural Norway spruce (<Emphasis Type="Italic">Picea abies</Emphasis>) forest at Mt. Brocken,Germany

European natural mountain Norway spruce (Picea abies) forests are currently subject to extensive disturbances. An improved understanding of the self-regulated regenerative capacity of this forest type is therefore needed. We used the last remnant of natural mountain Norway spruce forests in central northwestern Europe (BNF Brocken natural forest), to analyze (1) the diversity of structure and age distribution of the tree population and (2) the effect of disturbances on self-regulated tree regeneration over the last 264 years. To this end, we combined an assessment of stand structure with dendrochronological investigations and a review of disturbance history. We hypothesized that BNF exhibits a high diversity of tree ages and dimensions and that recruitment and survival of tree regeneration were largely independent from disturbances. BNF showed a high structural and age diversity. Disturbances exhibited no regular temporal pattern. Their effect on tree regeneration was rather complex and changed with observation period. Impeding and facilitating effects of past disturbances on recruitment were significant from 1736 to 1910. From 1911 until 2000, recruitment decoupled from preceding disturbances. Subsequent disturbances facilitated survival of established trees from 1736 to 1820, while afterward no significant influence could be proved. Our study showed that in the course of self-regulated development the tree population of BNF has gradually acquired, or maintained, a diverse structure. Disturbances served as an important driver of diversification. We concluded that increasing deadwood availability and limiting browsing are the key to securing immediate regeneration.     

A haplotype specific to North European wheat (<Emphasis Type="Italic">Triticum aestivum</Emphasis> L.)

A previous study indicated decreased DNA content of chromosome 4A in the wheat (Triticum aestivum L. cv. Tähti) compared to cvs. Chinese Spring and Rennan. Here we show that the lower 4A DNA content is associated with a specific haplotype in the distal part of 4AL. In 41 cultivars of bread wheat (T. aestivum L.), including cv. Tähti, a common haplotype was identified in the linkage disequilibrium region on the long arm of chromosome 4A (4AL). The haplotype (haplotype A) is characterized by 7 SSR and 5 EST marker alleles, including five zero-alleles. Haplotype A was found in 46 % of the Swedish/Finnish/Estonian spring wheat genotypes, while only one of the modern wheat accessions from Germany carried the same haplotype. Fluorescent cytometry analysis linked haplotype A to diminished DNA content of chromosome 4A. The haplotype was introduced into the Canadian and US breeding programs at the beginning of the twentieth century (cvs. Marquis, Thatcher, Ruby) from the common progenitor, the Polish landrace Fife, and it is still found in modern wheat germplasm in these countries. Zero-alleles characteristic for haplotype A were also detected in several accessions of European spelt (Triticum spelta L.), and in two accessions of tetraploid Triticum timopheevii Zhuk. The presence of haplotype A in European spelt indicates the considerable antiquity of the haplotype, as it must have been inherited from the hexaploid or tetraploid parent of spelt in at least one hybridization event.     

Results of bacteriological and cytological examinations of the endometrium of subfertile mares in stud farms in Serbia

Uterine microbiology, antimicrobial susceptibility and endometrial cytology were investigated in a total of 51 mares with fertility problems from 16 different stud farms in Serbia. Uterine cultures were performed after collection with a double guarded uterine swab, and endometrial cytology was evaluated after collection of endometrial cells with a special device (cytology brush). In 21 of 51 mares, at least one bacterial species was isolated from the uterus; the most frequent were Streptococcus equi subsp. zooepidemicus (13 isolates) and E. coli (four isolates). All isolates of Streptococcus equi subsp. zooepidemicus were susceptible to penicillin. Results from endometrial cytology were inconsistent; in 17 animals with positive bacteriological culture, cytology was not altered. It can be concluded that in Serbia, as in many other contries, Streptococcus equi subsp. zooepidemicus is the main cause for equine endometritis. It can be easily diagnosed by uterine culture but endometrial cytology does not always prove the existence of an endometrial infection with this agent.     

Edge effect of low-traffic forest roads on bird communities in secondary production forests in central Europe

Worldwide forests fragmentation has lead to a massive increase of habitat edges, creating both negative and positive impacts on birds. While busy highways dissecting forested areas create edges which are known to reduce bird densities due to the disturbing effect of noise, the impacts of logging forest roads with low traffic volumes have rarely been studied. In this study, we compared species richness and similarity of canopy, cavity and shrub guilds of birds along low-traffic forest roads, in forest interior, and at forest edges in secondary forests in central Europe, where the forests have passed through extensive changes toward uniformly compact growths dominated by production conifers. Although we found tree diversity as positively affecting bird richness across all habitats, the bird richness along forest roads was higher than in forest interior but lower than along forest edges. The shrub guild of birds along forest roads resembled this guild along forest edges while canopy and cavity guilds at the roads were more similar to these guilds in forest interior. Forest interior had the highest probability for some guild to be absent. We conclude that low-traffic roads lead to increase of habitat heterogeneity in structurally poor forests and attract birds due to additional habitat attributes—including better light conditions—that are scarce in forest interior. Therefore, broader support for higher structural diversification of uniform plantations in central European production forests would benefit bird communities inhabiting these areas.     

Effect of environmental variables on performance of Jerusalem artichoke (<Emphasis Type="Italic">Helianthus tuberosus</Emphasis> L.) cultivars in a long term trial: a statistical approach

Tuber yield, together with tuber number and size are the basic agronomic and breeding traits in Jerusalem artichoke and can be significantly affected by environmental factors. We report the results of a long term trial on the performance of 20 Jerusalem artichoke cultivars. The random model for means with restricted maximum likelihood (REML) procedure was used to estimate the overall effects of the genotype, environment and genotype by environment interaction on traits. The partial least square regression (PLSR) model was used for modeling genotype by environment interaction variance components with a set of available correlated environmental variables. The REML variance component estimates model revealed that tuber number and yield are more dependent on GE interaction which allowed identification of best genotypes for specific environments. The PLSR model revealed that the most important climatic variables for optimal emergence, canopy development, high tuber number and yield are adequate soil and air temperatures in April. For larger tuber mass, precipitation variables and even distribution of rainfall were the most important factor, together with soil and air temperature in June when tuber growth is initiated. The knowledge obtained in this study is valuable for the identification and understanding of key environmental factors that contribute to the performance of Jerusalem artichoke.     

Forest management impacts on capercaillie (<Emphasis Type="Italic">Tetrao urogallus</Emphasis>) habitat distribution and connectivity in the Carpathians

Context

Distribution and connectivity of suitable habitat for species of conservation concern is critical for effective conservation planning. Capercaillie (Tetrao urogallus), an umbrella species for biodiversity conservation, is increasingly threatened because of habitat loss and fragmentation.

Objective

We assessed the impact of drastic changes in forest management in the Carpathian Mountains, a major stronghold of capercaillie in Europe, on habitat distribution and connectivity.

Methods

We used field data surveys with a forest disturbance dataset for 1985–2010 to map habitat suitability, and we used graph theory to analyse habitat connectivity.

Results

Climate, topography, forest proportion and fragmentation, and the distance to roads and settlements best identified capercaillie presence. Suitable habitat area was 7510 km² in 1985; by 2010, clear-cutting had reduced that area by 1110 km². More suitable habitat was lost inside protected areas (571 km²) than outside (413 km²). Habitat loss of 15 % reduced functional connectivity by 33 % since 1985.

Conclusions

Forest management, particularly large-scale clear-cutting and salvage logging, have substantially diminished and fragmented suitable capercaillie habitat, regardless of the status of forest protection. Consequently, larger areas with suitable habitat are now isolated and many patches are too small to sustain viable populations. Given that protection of capercaillie habitat would benefit many other species, including old-growth specialists and large carnivores, conservation actions to halt the loss of capercaillie habitat is urgently needed. We recommend adopting policies to protect natural forests, limiting large-scale clear-cutting and salvage logging, implementing ecological forestry, and restricting road building to reduce forest fragmentation.

     

Success of nursing ide (Leuciscus idus, L.) fry related to the period of feeding with live food

The ide Leuciscus idus (Linnaeus 1758) belongs to autochthonous, less frequent and vulnerable fish species in the frame of ichthyofauna of the Czech Republic. It was the reason for testing the possibility of captive breeding and production of fry in a controlled environment. The goal of this paper was to find the optimal transfer time of ide larvae from live food (Artemia salina nauplii) to dry starter feed providing good survival and growth. At the end of the experiment, high values of cumulative survival (in percentages) and individual weight (in milligrammes) were found for ide fry in groups D (90.6%, 178.6 mg; 15 days A. salina + 10 days starter feed), A (89.9%, 169.9 mg; A. salina only) and C (88.6%, 160.4 mg; 10 days A. salina + 15 days starter feed). Significantly lower values of the given parameters were found in group B (57.1%, 92.6 mg; 5 days A. salina + 20 days starter feed), and the lowest ones were in group E (29.8%, 75.6 mg; starter feed only). Mean values of the level of ontogenesis at the end of the experiment in fry of A–E groups were analogous to length and weight growth. Groups D, C and A consisted of juveniles only (J1, J2), and groups B and E consisted of larvae and juveniles (L4, L5, L6, J1, J2). Condition and production parameters [Fulton’s coefficient of condition (FWC), total length (TL), weight (w), specific growth rate (SGR), food conversion ratio (FCR), cumulative survival] and relationships between basic lengths TL, fork length (FL) and standard length (SL) were evaluated.     

The effect of pest control on the incidence of trichinosis in Virovitica-Podravina County, Croatia

The aim of the study was to assess the role of pest control as a preventive measure in the control of trichinosis. The investigation was designed as a retrospective cohort study in the Virovitica-Podravina County. The incidence of trichinosis was determined according to the presence or absence of exposure to protective pest control measures. Differences in the rate of trichinosis infection were determined by calculating relative risk (RR), i.e., the ratio of absolute risk in the two groups. In this epidemiological study, data collected in the County area regularly covered by pest control (exposure area) were compared with other areas not covered by regular pest control measures (non-exposure area). The study included 132 subjects living in the County and locally infected with trichinosis. Patient data were obtained from their medical history, epidemiological survey and epidemiological questionnaire on the source (autochthony) of the disease. The study also included 133,028 domestic pigs, 875 wild animals (mostly wild boar) and 111 trapped rats. All samples were examined by the method of trichinoscopy at authorized veterinary institutions of the County. Trichinosis infection was recorded in 1012 of 79,534 domestic pigs in the area exposed to pest control measures and in 51 of 53,494 domestic pigs from the rest of the County. RR for the exposure area vs. non-exposure area was 13.35 (95% CI 10.08-17.68; p<0.05); according to particular areas, RR was 3.66 (95% CI 2.62-5.13) for Pitomaca, 22.47 (95% CI 13.27-38.08) for Slatina and 118.89 (95% CI 29.7-476.01) for Orahovica (p<0.05 all). Domestic pigs from the County areas exposed to regular pest control measures had a 13-fold likelihood of infection recorded in pigs from County areas where pest control measures were not or were only occasionally performed. Quite unexpectedly, these results revealed a failure of pest control to reduce the incidence of trichinosis. The spread of trichinosis obviously occurs by some routes obviating the impact of pest control.