Mixed modelling for QTL × environment interaction analysis

Phenotypic data for quantitative trait loci (QTL) mapping studies are typically generated at multiple environments in order to broaden the inference space. Many aspects of the usually complex design call for a mixed modelling approach taking into account various sources of variation, e.g., incomplete blocks, a spatial error structure, genetic correlations due to the pedigree, and random environmental effects, including QTL × E interaction. Perhaps the most important source of random variation is the genetic correlation across environment, which arises when the same set of lines is tested in each environment. This correlation is likely to be positive, and ignoring it will lead to an increased rate of false positives. In this paper, we present a mixed modelling framework for QTL mapping based on complex data from multiple environments. Our main focus is on an appropriate modelling for the non-QTL part. The methodology will be illustrated using a barley data set from a BC₂F_2:5 advanced backcross trial. This revised version was published online in July 2006 with corrections to the Cover Date.     

Genetic basis of grain filling rate in wheat (Triticum aestivum L. emend. Thell.)

Summary Grain filling rate in wheat (Triticum aestivum L. emend. Thell.) positively influences grain yield under a wide range of conditions. The effective utilization of this trait in breeding depends on an understanding of its genetic control. A study was, therefore, conducted to determine the genetic basis of grain filling rate in six crosses of wheat. Higher order genic interactions and/or linkage were important in the genetic regulation of grain filling rate (GFR) in the majority of crosses. Additive ([d]) and dominance ([h]) gene effects were important in the control of GFR in main ears (ME) and whole plant ears (WPE). Additive and additive × additive epistatic effects were the most important in the genetic control of GFR in last ears (LE). Location effects on genetic effects for GFR were significant (P < 0.05) in all ear types of some crosses except in ME. Genotype × environment interaction effects were important (P < 0.001) in LE and WPE.It was concluded that the inheritance of GFR is complex and is dependent on ear type. Breeding procedures that facilitate the exploitation of non-additive and additive gene effects were recommended for the genetic improvement of grain filling rate of wheat.     

Dialkyl 3,3'-thiodipropionate and dialkyl 2,2'-thiodiacetate antioxidants by lipase-catalyzed esterification and transesterification

Medium- and long-chain dialkyl 3,3'-thiodipropionate antioxidants such as dioctyl 3,3'-thiodipropionate, didodecyl 3,3'-thiodipropionate, dihexadecyl 3,3'-thiodipropionate, and di-(cis-9-octadecenyl) 3,3'-thiodipropionate were prepared in high yield by lipase-catalyzed esterification and transesterification of 3,3'-thiodipropionic acid and its dimethyl ester, respectively, with the corresponding medium- or long-chain 1-alkanols, i.e., 1-octanol, 1-dodecanol, 1-hexadecanol, and cis-9-octadecen-1-ol, in vacuo (80 kPa) at moderate temperatures (60-80 degrees C) without solvents. Immobilized lipase B from Candida antarctica (Novozym 435) was the most active biocatalyst for the preparation of medium- and long-chain dialkyl 3,3'-thiodipropionates showing enzyme activities up to 1489 units/g, whereas the immobilized lipases from Rhizomucor miehei (Lipozyme RM IM) and Thermomyces lanuginosus (Lipozyme TL IM) were by far less active ( approximately 10 enzyme units/g). Maximum conversions to dialkyl 3,3'-thiodipropionates were as high as 92-98% after 4 h of reaction time. Similarly, dihexadecyl 2,2'-thiodiacetate was prepared in high yield using 2,2'-thiodiacetic acid or diethyl 2,2'-thiodiacetate and 1-hexadecanol as the starting materials and Novozym 435 as the biocatalyst.     

Maintaining the Flow: Maintenance Service Provision in the Alto Río Lerma Irrigation District, Mexico

Through irrigation management transfer inMexico poorly functioning governancemechanisms for maintenance were replaced.New actors, new roles, and newresponsibilities in the maintenance ofMexican irrigation systems wereestablished. This article analyzes themaintenance service delivery mechanisms inthe Alto Río Lerma Irrigation District(ARLID), to evaluate if and how theinstitutional arrangements establishedthrough management transfer ensure adequateservice provision. After presenting themain actors currently involved inirrigation maintenance, the rules andregulations underlying the servicerelationships between the actors involvedin maintenance in ARLID are analyzed. Thisis done by detailing how theserelationships are formally organized, howthey work in practice, and which incentivesexist for the service providers to providean efficient service and for the servicerecipient to pro-actively participate inservice provision. We conclude that the newinstitutional framework for maintenanceservice provision is quite coherent andthat the governance mechanisms that havebeen established work well, especiallythose between the farmers and theirorganizations. This has led to improvedmaintenance services.     

Dynamics and drivers of aboveground biomass accumulation during recovery from selective harvesting in an uneven-aged forest

European Journal of Forest Research - Selective harvesting is a common silvicultural practice to ensure sustainable use of uneven-aged forests, but our understanding of how multiple forest...     

Spectral sensitivity in the photodegradation of fir wood (Abies alba Mill.) surfaces: colour changes in natural weathering

Activation spectra of wood under natural irradiation were investigated in detail in this work. The main purpose was to study colour changes on the wood surface over time and into the depth during natural light exposure and thus to further contribute to the optimization of surface-protecting treatments. In a natural weathering test, three 80-μm-thick strips of fir wood forming the surface layer of a wood composite were exposed to light under a series of glass cut-off filters. Samples were withdrawn at intervals and tested for colour changes. Identification of the most detrimental wavebands of light causing photodegradation was performed based on recorded colour changes. With chronological development of exposure, the colour changes shifted ever deeper into the surface and further into the visible region of the spectrum. A relatively narrow waveband from 360 to 435 nm was identified in the activation spectra to be the most active band, causing the greatest proportion of recorded colour changes. However, also visible light of wavelengths up to 515 nm significantly contributed to colour changes of the surface layers.     

A case study of forest management planning using a new heuristic algorithm

We present an approach to generate and evaluate different silvicultural development paths and to optimize the development of a Norway spruce stand, using a long-term planning horizon. To generate a silvicultural path, the maximum stand density was applied. At each thinning event, three possible thinning intensities (10, 20, 30% of the stem number per ha) were randomly chosen. A search algorithm known as modified Accelerated Simulated Annealing (mASA) was used to estimate the optimum combination of stand paths for a given forest as a whole. Production and economic management objectives were considered and then compared. The economic criterion was the Expected Stand Value (ESV) with a 4% discount rate. The generated data set of 38 Norway spruce stands (comprising a total of 123.8 ha) was used in the case study. The result with the best combination of paths was presented in a digitized forest map. Forest management simulation was performed using a specially developed computer program, for a planning horizon of 20 years. The mASA proved to be an effective search method for identifying optimum paths.     

Concept and feasibility study for the integrated evaluation of environmental monitoring data in forests

In the 1970s unexpected forest damages, called “new type of forest damage” or “forest decline”, were observed in Germany and other European countries. The Federal Republic of Germany and the German Federal States implemented a forest monitoring system in the early 1980s, in order to monitor and assess the forest condition. Due to the growing public awareness of possible adverse effects of air pollution on forests, in 1985 the ICP Forests was launched under the convention on long-range transboundary air pollution (CLRTAP) of the United Nations Economic Commission for Europe (UN-ECE). The German experience in forest monitoring was a base for the implementation of the European monitoring system. In 2001 the interdisciplinary case study “concept and feasibility study for the integrated evaluation of environmental monitoring data in forests”, funded by the German Federal Ministry of Education and Research, concentrated on in-depths evaluations of the German data of forest monitoring. The objectives of the study were: (a) a reliable assessment of the vitality and functioning of forest ecosystems, (b) the identification and quantification of factors influencing forest vitality, and (c) the clarification of cause-effect-relationships leading to leaf/needle loss. For these purposes additional data from external sources were acquired: climate and deposition, for selected level I plots tree growth data, as well as data on groundwater quality. The results show that in particular time series analysis (crown condition, tree growth, and tree ring analysis), in combination with climate and deposition are valuable and informative, as well as integrated evaluation of soil, tree nutrition and crown condition data. Methods to combine information from the extensive and the intensive monitoring, and to transfer process information to the large scale should be elaborated in future.