Linkage analysis among loci for RAPDs, isozymes and some agronomic traits in Brassica campestris L.

Common bean, Phaseolus vulgaris L. is intercropped or relay cropped with maize in many Andean highlands of Colombia and Peru. Breeding beans for the target multiple cropping systems is essential for the development of productive and sustainable agriculture for the Andean smallholders. Outline of the breeding programme should follow the farming system approach with the establishment of on-farm trials and early farmers involvement. Bean breeding is oriented to minimize intercrop competition and to stabilize complementarity with maize. Genetic traits needed for improved varieties are divided as follows : traits not interacting with the cropping systems, traits specific to intercrops and traits related with socioeconomic and seed quality aspects. Screening, prebreeding and recombination nursery are better made under sole cropping while varietal improvement and on-farm trials are conducted under the target multiple cropping systems. Breeding schemes may involve recurrent, pedigree and bulk hybrid selection. The given application concerns the genetic improvement of P. coccineus, P. polyanthus and interspecific hybrids of P. vulgaris for both simultaneous and relay intercropping in Colombia and Peru. Earliness, cold tolerance, resistance to fungus diseases (mainly Ascochyta leaf blight and anthracnosis) and seed yield potential were the major objectives of the bean improvement programme. Priority has been given to the exploitation of the large diversity available in the secondary gene pool of common bean. This revised version was published online in July 2006 with corrections to the Cover Date.     

Genetic nature of low capsaicin content in the variant strains induced by grafting in Capsicum annuum L.

Summary The genetic nature of low capsaicin content in variant strains induced by grafting was elucidated by crossing the G₅S₂₃ strain with the two cultivars, Yatsubusa (Capsicum annuum L. var. fasciculatum Ilish) and Spanish Paprika (C. annuum L. grossum Sendt) originally used for grafting. Decreased capsaicin synthesis was a stable characteristic for at least several generations from G₅S₁₆ to G₅S₂₃ and was transmitted to the progenies of crosses. This fact shows that the decreased capsaicin synthesis is a genetic trait in the graft-induced variant strains. The genetically dependent characteristic of pungency of the G₅S₂₃, Yatsubusa and Spanish Paprika were analysed by High Perfomance Liquid Chromatography measurement and tasting assay.Cross experiment between the G₅S₂₃ strain, hot parent Yatsubusa and sweet parent Spanish Paprika showed that pungent and sweet for pungency chracteristics are generally controlled by at least two pairs of genes. Although segregation of capsaicin content and pungency was clearly demonstrated in F₂ progenies from reciprocal crosses between the G₅S₂₃ strain and Spanish Paprika, F₂ progenies from reciprocal crosses between G₅S₂₃ and Yatsubusa were all hot and did not develop low capsaicin plants.     

Detection of giant myofibrillar proteins connectin and nebulin in fish meat by electrophoresis in 3-5 gradient sodium dodecyl sulfate polyacrylamide slab gels

An improved method was investigated for sodium dodecyl sulfate polyacrylamide slab gel electrophoresis (SDS-PAGE) to facilitate the analysis of the giant myofibrillar proteins, connectin and nebulin, in fish meat by using jack mackerel (Trachurus japonicus) as the sample fish. It was established that separation of the alpha-connectin band from the beta-connectin band by SDS-PAGE could be achieved by using 3-5% gradient gels with glycerol to facilitate the formation of a gradient with polymerization at 35 degrees C. SDS-PAGE samples of white dorsal muscle from the jack mackerel were homogenized with a 2% SDS solution containing an inhibitor mixture (1 microg/mL of phenylmethanesulfonyl fluoride, 1 microg/mL of leupeptin, and 1 microg/mL of E-64) and heated at 50 degrees C for 20 min. Heating these samples at 100 degrees C for 2 min resulted in the disintegration of connectin but did not affect nebulin. A purified myofibril sample and a whole muscle sample showed similar changes in the overall rate of degradation of whole connectin and nebulin during the postmortem storage period, but it was clear that beta-connectin was cleaved from alpha-connectin during the preparation of myofibrils at the early stage postmortem. Storage of the SDS-PAGE samples at -85 degrees C was preferable to storage at -18 degrees C for a long period.     

Predicting the saturated hydraulic conductivity of compacted subsoils using the non-similar media concept

It is widely recognized that saturated hydraulic conductivity is dominated by the micromorphology of soil pores rather than by the merely total porosity or dry bulk density. Nevertheless, some researchers are reporting that the decrease in saturated hydraulic conductivity of subsoil is simply associated with the decrease in soil porosity or increase in dry bulk density. Based on these understandings in published papers and on our preliminary field investigation, we assumed that micromorphology of soil pores in topsoils is subjected to be destroyed with continuous disturbance by frequent tillage while subsoils tend to be compacted without serious changes of micromorphology of soil pores. Thus, we focused on finding the dependence of saturated hydraulic conductivity on dry bulk density by separating the soils into tilled layer and compacted layer. The objective of this study was to describe the relationship between saturated hydraulic conductivity and dry bulk density using a theoretical model, the non-similar media concept (NSMC) model, capable of predicting saturated hydraulic conductivities of soils with different values of dry bulk densities. The study area was located near the Tone River in Saitama Prefecture, Japan, where the soils were classified into Haplic Brown Lowland Soils according to the Classification of Cultivated Soils in Japan (Eutric Fluvisol according to FAO/UNESCO). Two sites, where the topsoils were seasonally tilled while the subsoils were sustained as it is, and another site where the topsoil was seasonally tilled, too, but extra deep tillage (1 m tillage depth) had been done, were chosen for the measurements. The saturated hydraulic conductivities and dry bulk densities of undisturbed soil cores from different depths were measured in the laboratory. The NSMC model was carefully applied only when the soil textures were the same among samples. The well-known conventional equations formulated by Kozeny–Carman and by Campbell, were used to compare the applicabilities with the NSMC model. The NSMC model succeeded in predicting the saturated hydraulic conductivities in the compacted subsoils. On the other hand, the NSMC model was not applicable to the tilled topsoils and to the deeply tilled subsoil. The saturated hydraulic conductivity of tilled topsoils and deeply tilled subsoil was always lower than that of compacted subsoils at the same dry bulk densities. The Kozeny–Carman and Campbell equations both failed in the prediction of saturated hydraulic conductivity in subsoil. It was concluded that the saturated hydraulic conductivity of subsoils under compaction without extreme disturbance is well related with its dry bulk density by the NSMC model.     

Improved uptake models of nonionized pesticides to foliage and seed of crops.

The residual amount of nonionized pesticides incorporated to foliage and stem (foliage) and seed (fruit) of crops via root hairs from the water phase was estimated using the uptake models newly including metabolic parameters by which the amount of intact pesticide remaining in crops was considered with its proportion in a transpiration stream. A new parameter was also introduced for the seed model that accounts for the pesticide loss by adsorption to the inner surface of xylem tissue. Validation of the model was conducted using six pesticides with soybean and spinach plants. The ratio of the predicted concentration of pesticide to the measured one was 0.44-1.49 and 0.57-2.93 with foliage and seed models, respectively, showing that these improved models would be effective as a prediction tool.     

Postharvest litchi (Litchi chinensis Sonn.) quality preservation by Lactobacillus plantarum

The objective of this work was to preserve the postharvest quality of litchi cv Brewster by the application of Lactobacillus plantarum. A suspension of 1 × 10⁹ CFU/mL of the bacteria was sprayed on ripe litchis and then stored at 10 °C with 75% of relative humidity. Treated fruit exhibited a significantly higher Gram positive bacteria growth on the rind (4–5 log CFU/g) than that detected in control fruit (2.5–3.75 log CFU/g). This result was corroborated by observing a high population of lactobacilli in scanning electron micrographs and by measurement of the content of lactic acid produced. Treated fruit displayed significantly (α ≤ 0.05) reduced color losses as indicated by the higher L* and C* values in comparison with the untreated ones. Additionally, cyanidin-3-rutinoside and total anthocyanin contents supported the measured color retention, since the pericarp of fruit treated with Lb. plantarum showed a significantly higher concentration of pigments than those used as control. In addition, a high concentration of phenolic compounds was found in the rind of treated fruit.     

Isotopic compositions of cometary matter returned by Stardust

Hydrogen, carbon, nitrogen, and oxygen isotopic compositions are heterogeneous among comet 81P/Wild 2 particle fragments; however, extreme isotopic anomalies are rare, indicating that the comet is not a pristine aggregate of presolar materials. Nonterrestrial nitrogen and neon isotope ratios suggest that indigenous organic matter and highly volatile materials were successfully collected. Except for a single (17)O-enriched circumstellar stardust grain, silicate and oxide minerals have oxygen isotopic compositions consistent with solar system origin. One refractory grain is (16)O-enriched, like refractory inclusions in meteorites, suggesting that Wild 2 contains material formed at high temperature in the inner solar system and transported to the Kuiper belt before comet accretion.     

Effects of ingested turmeric oleoresin on glucose and lipid metabolisms in obese diabetic mice: a DNA microarray study

Turmeric, the rhizome of Curcuma longa L., has a wide range of effects on human health. Turmeric oleoresin, an extract of turmeric, is often used for flavoring and coloring. Curcuminoids and turmeric essential oil are both contained in turmeric oleoresin, and both of these fractions have hypoglycemic effects. In the present study, we comprehensively assessed the effect of turmeric oleoresin on hepatic gene expression in obese diabetic KK-Ay mice using DNA microarray analysis and quantitative real-time polymerase chain reaction (PCR). Female KK-Ay mice aged 6 weeks (n = 6/group) were fed a high-fat diet containing turmeric oleoresin, curcuminoids, and essential oil for 5 weeks. The same diet without any of these fractions was used as a control diet. Ingestion of turmeric oleoresin and essential oil inhibited the development of increased blood glucose and abdominal fat mass, while curcuminoids only inhibited the increase in blood glucose. DNA microarray analysis indicated that turmeric oleoresin ingestion up-regulated the expression of genes related to glycolysis, beta-oxidation, and cholesterol metabolism in the liver of KK-Ay mice, while expression of gluconeogenesis-related genes was down-regulated. Real-time PCR analysis was conducted to assess the contribution of the curcuminoids and essential oil in turmeric oleoresin to the changes in expression of representative genes selected by DNA microarray analysis. This analysis suggested that curcuminoids regulated turmeric oleoresin ingestion-induced expression of glycolysis-related genes and also that curcuminoids and turmeric essential oil acted synergistically to regulate the peroxisomal beta-oxidation-related gene expression induced by turmeric oleoresin ingestion. These changes in gene expression were considered to be the mechanism by which the turmeric oleoresin affected the control of both blood glucose levels and abdominal adipose tissue masses. All of these results suggest that the use of whole turmeric oleoresin is more effective than the use of either curcuminoids or the essential oil alone.     

Structures and antioxidant activity of anthocyanins in many accessions of eggplant and its related species

Anthocyanins were detected in extracts from the peels of 123 accessions of eggplant (Solanum melongena) and its related species. Their anthocyanin profiles were classified into four types, including known Japanese eggplant type (type 1) and non-Japanese eggplant type (type 2). Although most of the eggplant accessions had one of the two known profiles, one accession had a novel profile (type 3). Two accessions of related species showed another novel profile (type 4). The major anthocyanins were identified as delphinidin 3-(p-coumaroylrutinoside)-5-glucoside (nasunin) (type 1), delphinidin 3-rutinoside (type 2), delphinidin 3-glucoside (type 3), and petunidin 3-(p-coumaroylrutinoside)-5-glucoside (petunidin 3RGc5G) (type 4). Delphinidin 3-caffeoylrutinoside-5-glucoside (delphinidin 3RGcaf5G) was isolated from the hybrid (F1) plants of a type 1 cultivar and a type 3 germplasm. Among the five purified anthocyanins, delphinidin 3RGcaf5G showed the highest radical-scavenging activities toward both 1,1-diphenyl-2-picrylhydrazyl (DPPH) radical and linoleic acid radical, followed in order by nasunin and petunidin 3RGc5G.     

Tree influence on soil biological activity: What can be inferred from the optical examination of humus profiles?

Humus forms may vary in different forest stands, but the local influence of trees upon soil microbial and faunal activities is still imperfectly known. Optical methods could help to discern processes of litter transformation and formation of organo-mineral assemblages, allowing a better diagnostic of tree influences upon humus-soil development. The microstratification of humus was studied under a beech (Fagus crenata), a mixed oak forest (Quercus crispula and Quercus serrata), and a cedar (Cryptomeria japonica) plantation. The three sites are located in Kyoto (Japan), and share similar environmental conditions. Litter decomposition rates and soil fauna were also investigated. At the beech site, which had the thickest O horizon, the main process was the gradual fragmentation of litter. This process, together with shallow root and weak fungal development, gave rise to a stable sandwich-like structure in the O horizon. In contrast, the oak site showed a two-step transformation of litter. Initially, litter decomposition was triggered by the activity of white rot fungi, and the discarded litter decayed much more slowly thereafter. The cedar site exhibited a sharp vertical delineation between upper thick Oe horizon developed since plantation time and a relict A horizon. The optical method thus demonstrated differences in soil biological activities and litter transformation patterns under the three sites.