Allelic variation of a clubroot resistance gene (Crr1a) in Japanese cultivars of Chinese cabbage (Brassica rapa L.)

Clubroot resistance (CR) is an important trait in Chinese cabbage breeding worldwide. Although Crr1a, the gene responsible for clubroot-resistance, has been cloned and shown to encode the NLR protein, its allelic variation and molecular function remain unknown. Here, we investigated the sequence variation and function of three Crr1a alleles cloned from six CR F₁ cultivars of Chinese cabbage. Gain-of-function analysis revealed that Crr1a^Kinami90_a isolated from the cv. ‘Kinami 90’ conferred clubroot resistance as observed for Crr1a^G004. Because two susceptible alleles commonly lacked 172 amino acids in the C-terminal region, we investigated clubroot resistance in transgenic Arabidopsis harboring the chimeric Crr1a, in which 172 amino acids of the functional alleles were fused to the susceptible alleles. The fusion of the C-terminal region to the susceptible alleles restored resistance, indicating that their susceptibility was caused by the lack of the C-terminus. We developed DNA markers to detect the two functional Crr1a alleles, and demonstrated that the functional Crr1a alleles were frequently found in European fodder turnips, whereas they were rarely introduced into Japanese CR cultivars of Chinese cabbage. These results would contribute to CR breeding via marker-assisted selection and help our understanding of the molecular mechanisms underlying clubroot resistance.     

Reproductive biology of common silver biddy Gerres oyena in Okinawa Island of southern Japan

ABSTRACT:   Common silver biddy Gerres oyena were collected monthly between November 2002 and November 2005 in Okinawa Island of southern Japan. The seasonal reproductive cycle of this species was investigated using the gonadosomatic index (GSI) and through histological observation of gonads. Temporal variation in the GSI reflected gonadal development from histological observations; ovary development occurred from March to September and testes development occurred between March and August. Maximal development was observed in April and May in both sexes. While mean values for hepatosomatic and lipidosomatic indices decreased markedly in females relative to males during gonadal development, mean condition factors decreased with gonadal recrudescence in both sexes. The minimum standard length (SL) at sexual maturity was 89.7 mm for females and 81.4 mm for males and the size at which 50% of individuals were sexually mature was 104 and 92 mm SL in females and males, respectively. The power relationships of batch fecundity (BF) versus standard length (SL, mm) and body weight (BW, g) of females can be expressed as BF  = 46.7 × e^{1.64 SL} and BF  = 19 697 × e^{0.49 BW} , respectively.     

Seasonal variations in the incidence of pine wilt and infestation by its vector, Monochamus alternatus, near the northern limit of the disease in Japan

During the last few decades, pine wilt disease has spread to cool-climate regions in Japan and, more recently, the potential risk of it spreading into the European midwest has also become a concern. In a coastal pine stand (84.7?ha) in Akita, near the northern limit of pine wilt disease in Japan, we investigated seasonal variations in the incidence of damage caused by the disease to trees and oviposition by the disease’s insect vector, Monochamus alternatus, during a two-year period. Foliage discoloration occurred throughout each year, and its seasonal variation showed a bimodal pattern in Pinus thunbergii (a higher peak in May–June and a smaller peak in October) and a clear peak in June in P. densiflora, which differed from the patterns in seasonal variation seen for warm-climate regions. Oviposition scars by M. alternatus were found in 40–45% of the trees damaged each year. The percentage of trees that had oviposition scars was higher in P. thunbergii than in P. densiflora. This appeared to reflect the difference in seasonal discoloration pattern between the two species. Analysis of the oviposition risk showed that trees that exhibited discoloration starting between July and October had a significantly higher risk or significantly higher oviposition scar densities, particularly for those that became discolored between August and September (2.5–14.6-fold higher risk than during other months). Oviposition scar densities per damaged tree were similar within the period of higher oviposition risk. Considering both oviposition risks and scar densities, we concluded that trees with discoloration that become apparent between July and October are important targets for preventing the spread of pine wilt disease in Akita.     

Comparison of morphological and DNA-based techniques for stomach content analyses in juvenile chum salmon <Emphasis Type="Italic">Oncorhynchus keta</Emphasis>: a case study on diet richness of juvenile fishes

To identify the stomach contents of marine organisms, morphological observations are commonly conducted. However, the results obtained by this traditional method are frequently biased, as it is difficult to detect partially digested, soft-bodied organisms. To resolve this, recent studies have used DNA-based (DNA barcoding) analyses to examine the diet breadth of marine organisms. Here, we compared the prey richness of juvenile fishes using morphological observations and DNA-based analyses, with a focus on juvenile chum salmon Oncorhynchus keta. A higher number of prey taxa were successfully identified using DNA-based analyses than morphological observations. However, we also noticed several shortcomings of the DNA-based analyses, as reported in other diet-analysis studies that used molecular techniques. For example, the degree of digestion among prey taxa might have resulted in differential sensitivity to DNA detection. Additionally, several prey taxa could not be precisely identified, as the sequence data for some of the targeted organismal groups are unavailable in public gene databases. Remarkably, it is also possible that DNA-based analyses detected secondary prey, and therefore, the richness of prey taxa was likely overestimated. Thus, dietary analyses of juvenile fishes need to be carefully conducted, considering the respective advantages and disadvantages of DNA-based and morphological techniques.     

Larval fish fauna of a sandy beach and an estuary on Okinawa Island,focusing on larval habitat utilization by the suborder Gobioidei

The Ryukyu Archipelago has a diverse fish fauna, but there have been no comprehensive studies of the larval fish fauna of its coastal habitats. The present study therefore investigated the species composition of larval fish communities on the sandy beach of Sedake and in the estuary of Teima Stream at Oh-ura Bay on Okinawa Island. In total, 12,067 individuals comprising 131 or more species that belong to 114 genera and 48 families were collected at night using a small seine net from January to December 1999. The suborder Gobioidei was the dominant taxon in this collection (86 %) and comprised 53 or more species. Most gobioids were postflexion larvae of amphidromous and estuarine species, at the stage just before they recruited to their adult habitats. Body lengths showed little variance within species. This suggests that they do not spend most of their pelagic larval lives in the estuary and on the sandy beach. These environments appear to be the route by which pelagic larvae move to their adult habitats. However, Rhinogobius and Tridentiger postflexion larvae displayed greater variance in body length and development, suggesting that they stay near the shoreline throughout this larval period.     

Quercetin-4'-glucoside is more potent than quercetin-3-glucoside in protection of rat intestinal mucosa homogenates against iron ion-induced lipid peroxidation

Quercetin is a typical antioxidative flavonoid found in vegetables, which is more commonly present as its glucosides, quercetin-3-glucoside (Q3G) and quercetin-4'-glucoside (Q4'G). The main aim of this study was to estimate the antioxidant activity of Q3G and Q4'G on iron ion-driven lipid peroxidation of the gastrointestinal mucosa. Q4'G markedly suppressed the lipid peroxidation when rat gastrointestinal mucosa homogenates were incubated with Fe(NO3)3 and ascorbic acid. Its effectiveness was greater as compared to that of Q3G and comparable to that of quercetin aglycone. Furthermore, Q4'G yielded higher amounts of quercetin aglycone than Q3G on incubation with the homogenates. However, Q4'G showed a lower chelating activity in comparison to Q3G. These results indicate that Q4'G, even though it has a low chelating activity, because of its efficient conversion to antioxidative aglycone on exposure to the mucosa, can act as a powerful antioxidant on iron ion driven lipid peroxidation in the intestinal mucosa. Thus, vegetables rich in Q4'G, such as onion, are likely to serve as favorable antioxidant sources for suppressing iron-induced oxidative stress in the intestinal tract.     

Vertical profiles of environmental factors within tropical rainforest, Lambir Hills National Park, Sarawak, Malaysia

Environmental factors, such as global solar radiation, wind speed, air temperature, humidity, and CO₂ concentration, were measured above and within the canopy of a tropical rainforest in Lambir Hills National Park, Sarawak, Malaysia. Few data concerning the environment of this forest have been reported. Intensive observations were carried out in 1998, 1999, and 2000 with the following results: (1) The fraction of global solar radiation reaching the upper layer of the canopy varied with global solar radiation above the canopy. Even though the global solar radiation above the canopy fluctuated, the fraction of that reaching the lower canopy and the ground was constantly approximately 5%. (2) The fraction of wind speed reaching each layer of the canopy increased with wind speed above the canopy. Little wind was usually present at the lower canopy. (3) The daytime air temperature at the canopy top was higher than that near the ground. The maximum difference between the air temperature at the canopy top and that at the ground was about 5°C, and the diurnal temperature ranges at the canopy top and those at the ground were about 8°C and about 5°C, respectively. The highest daytime water vapor pressure occurred within the canopy and particularly near the ground. Vertical gradients of water vapor pressure during the day were steep, probably because of high transpiration. (4) In the 1998 observation the minimum and the maximum CO₂ concentrations were 360 ppm in the day and 450 ppm at night, while in the 2000 observation the minimum and the maximum CO₂ concentrations were 350 ppm in the day and 540 ppm at night. The higher CO₂ concentration in the daytime and the lower concentration at night observed during the 1998 observation period were probably due to reduced photosynthesis and soil respiration caused by exceptional dry conditions during the observation period.     

Age and growth of two gizzard shads, <Emphasis Type="Italic">Nematalosa come</Emphasis> and <Emphasis Type="Italic">N. japonica</Emphasis>, in coastal waters around Okinawa Island,southwestern Japan

The age and growth of two Nematalosa species around Okinawa Island were examined using sectioned otoliths collected from September 2003 to April 2006. Monthly changes in the frequency of the appearance of a translucent band on the outer margin of the otoliths indicated that ring formation occurred once a year from January to July for Nematalosa come and from January to March for Nematalosa japonica. The von Bertalanffy growth equations for both species were as follows: N. come: L _t  = 365.5{1 − exp[−0.111 × (t + 0.288)]} for females and L _t  = 214.7{1 − exp[−0.700 × (t – 1.110)]} for males; N. japonica: L _t  = 205.1{1 − exp[−1.068 × (t − 1.180)]} for females and L _t  = 195.5 {1 − exp[−1.293 × (t − 1.269)]} for males. The maximum ages observed for N. come and N. japonica were 11 and 6 years old, respectively. The growth of these species was characterized by the slow growth of N. come over many years, resulting in a larger size than N. japonica.     

Comparison of the odor-active compounds in unhopped beer and beers hopped with different hop varieties

Odorants comprising the hop aromas of beers were examined. Strongly hopped beers with Saazer, Hersbrucker, and Cascade hops were compared with unhopped beer by gas chromatography-olfactometry (CharmAnalysis) and sensory evaluation. Twenty-seven odorants were revealed as hop-derived, which derived either directly from hops or via metabolization, and 19 components were identified. Of the components, linalool, geraniol, ethyl 2-methylbutanoate, ethyl 3-methylbutanoate, and ethyl 2-methylpropanoate were determined as odor-active components from their Charm values and aroma values. The muscat-like aroma of Cascade beer and the spicy aroma of Hersbrucker beer were predominant in sensory evaluation, and the contributors to these characteristics were investigated.     

Development of novel clubroot resistant rapeseed lines (Brassica napus L.) effective against Japanese field isolates by marker assisted selection

Clubroot is an important disease infectible to cruciferous plants and a major threat to rapeseed production in Japan. However, no clubroot resistant rapeseed cultivars have been released. We surveyed pathotype variation of six isolates collected from rapeseed fields and found they were classified as pathotype groups 2 and 4 using Japanese F₁ Chinese cabbage cultivars. We produced the resynthesized clubroot resistant Brassica napus harboring two resistant loci, Crr1 and Crr2, by interspecific crossing and developed resistant rapeseed lines for southern and northern regions by marker-assisted selection and backcrossing. We improved the DNA marker for erucic acid content to remove linkage drag between Crr1 and high erucic acid content and successfully selected lines with clubroot resistance and zero erucic acid for northern regions. A novel line, ‘Tohoku No. 106’, suitable for southern regions showed stable resistance against all six isolates and high performance in infested fields. We conclude that Crr1 and Crr2 are important genes for CR rapeseed breeding and marker-assisted selection is effective in improving clubroot resistance.