Diversity Among Strains of Xanthomonas campestris pv. vitians from Lettuce

ABSTRACT Diversity in host range, pathogenicity, phenotypic characteristics, repetitive extragenic palindromic polymerase chain reaction (rep-PCR) profiles, and sequence of the 16S-23S rDNA spacer region was examined among 44 Xanthomonas strains isolated from lettuce. Forty-two of the strains were divided into two groups, designated A and B. Seventy percent were Group A, and most of the remaining strains including a reference strain (LMG 938) were Group B. Group A strains induced both local and systemic symptoms, whereas Group B strains caused only distinct necrotic spots. Two strains, including the X. campestris pv. vitians type strain, were distinct from the Group A and B strains and were not pathogenic on lettuce. Analysis of fatty acid profiles, serotype, carbon substrate utilization patterns, and protein fingerprints confirmed this grouping. The Group A and B strains also formed two unique clusters (I and II) by rep-PCR profiling that corresponded to the two groups. Direct sequencing of a PCR-amplified DNA fragment (680 bp) from the 16S-23S rDNA spacer region of four representative strains, however, did not differentiate these groups. Serology and rep-PCR fingerprinting can be used to diagnose and identify X. campestris pv. vitians strains, while the other analyses evaluated are useful for strain characterization.     

Expression analysis of the genes involved in osmotic adjustment in bread wheat (Triticum aestivum L.) cultivars under terminal drought stress conditions

Osmotic adjustment is the main component for physiological machinery of wheat drought tolerance. Some of parameters implicated in osmotic adjustment in 15 bread wheat cultivars were evaluated at soil water deficits (50% FC) and FC as the control in the greenhouse. For the physiological traits, analysis of variance showed that there are highly significant differences between treatments, i.e. water stress levels and wheat cultivars. Shahpasand and Marvdasht as sensitive wheat cultivars had significantly lower osmotic adjustment, relative water content, K+ content, soluble sugar, proline, and glycine betaine levels than the rest of the cultivars. The results of cluster analysis revealed that all cultivars were grouped into three distinct clusters. Dez, Kavir, Pishtaz, and Maron cultivars which have the highest osmoregulation activity were in cluster I, whereas clusters II (Pishgam, Aflak, Hirmand, Zagros, and Vee/Nac) and III (Ws-89-2, Sardari, Azar2, Shapasand, and Marvdasht) had intermediate activity and the lowest capacities for osmoregulation, respectively. In addition, in wheat flag leaf during the reproductive stage under drought conditions, the changes in gene expression of two key genes namely P5CS (D-Pyrroline-5-carboxylate synthetase) and BADH (Betaine Aldehyde Dehydrogenase) in two selected cultivars including Dez and Marvdasht revealed that water stress can increase the expression level of the genes P5CS and BADH in the resistant cultivar, Dez, compared with Marvdasht, the sensitive one. In general, it seemed that application of the all cultivars in cluster I would enable breeders to acquire more reliable achievements under drought conditions.     

Ecology,habitat and bird community structure at Oussudu lake: towards a strategy for conservation and management

• 1. Oussudu lake is a large, shallow wetland situated close to the city of Pondicherry, India. The lake harbours rich flora and fauna, and has been recognized as one of the important wetlands of Asia by the International Union for Conservation of Nature and Natural Resources (IUCN).
• 2. This paper summarizes the results of a 5‐year study on the annual composition, richness, diversity and population density of the bird community at Oussudu. A GIS database was developed on the basis of field surveys and allied studies.
• 3. The study reveals a declining trend in the number and diversity of the birds found at Oussudu with the exception of herons, egrets, plovers and lapwings. A relationship appears to exist between this decline in bird diversity and an increase in illegal fishing, cattle grazing, encroachments and pollution. These factors may have contributed to the decline of food and shelter for the birds.
• 4. A strategy has been developed for the conservation and management of the Oussudu catchment which would help in reversing undesirable trends.

Copyright © 2003 John Wiley & Sons, Ltd.     

Molecular basis of Iron Biofortification in crop plants; A step towards sustainability

Iron is one of the most important micronutrients for crop plants due to its use in important physiological processes such as photosynthesis, mitochondrial respiration, metal homeostasis, and chlorophyll synthesis. Crop plants have adapted different strategies for uptake, transport, accumulation, and storage of iron in tissues and organs which later can be consumed by humans. Estimates indicate that about 2 billion people (33% of human population) are at risk of iron deficiency in which infants, children, and pregnant women are potentially compromised. Biofortification refers to the increase in concentration of micronutrients in edible parts of plants and understanding the pathways for iron accumulation in plants is necessary for breeding iron‐enriched crops. Iron‐biofortified crops are also one of the key factors in achieving multiple United Nations Sustainable Development goals. This review article covers different strategies of iron acquisition and transport in plants, its bioavailability, coping with the iron deficiency as a global perspective, the current status of iron biofortification, and how breeding future biofortified crops could be helpful in combating the said issue in a sustainable manner.     

Simulation of 1D surface and 2D subsurface water flow and nitrate transport in alternate and conventional furrow fertigation

Increasing water and fertilizer productivity stands as a relevant challenge for sustainable agriculture. Alternate furrow irrigation and surface fertigation have long been identified as water and fertilizer conserving techniques in agricultural lands. The objective of this study was to simulate water flow and fertilizer transport in the soil surface and in the soil profile for variable and fixed alternate furrow fertigation and for conventional furrow fertigation. An experimental data set was used to calibrate and validate two simulation models: a 1D surface fertigation model and the 2D subsurface water and solute transfer model HYDRUS-2D. Both models were combined to simulate the fertigation process in furrow irrigation. The surface fertigation model could successfully simulate runoff discharge and nitrate concentration for all irrigation treatments. Six soil hydraulic and solute transport parameters were inversely estimated using the Levenberg–Marquardt optimization technique. The outcome of this process calibrated HYDRUS-2D to the observed field data. HYDRUS-2D was run in validation mode, simulating water content and nitrate concentration in the soil profiles of the wet furrows, ridges and dry furrows at the upstream, middle and downstream parts of the experimental field. This model produced adequate agreement between measured and predicted soil water content and nitrate concentration. The combined model stands as a valuable tool to better design and manage fertigation in alternate and conventional furrow irrigation.     

Pig manure digestate-derived biochar for soil management and crop cultivation in heavy metals contaminated soil

Management of heavy metal-contaminated soil under drought and other harsh hydrological conditions is critical for protecting soil ecosystem services. In this study, we examined the effect of pig manure digestate-derived biochar as a soil amendment (15 t ha⁻¹) with N fertilizer (180 kg ha⁻¹) on soil and plant heavy metal levels and nutrient availability under various moisture regimes (optimal moisture ~15%, drought condition ≤5%, and flooded condition ≥35% wt.). It was observed that biochar applications significantly decreased heavy metals in the spring wheat plants, lowering Cr by 90%, Ni by 50%, Cd by 9% and Pb by 34% compared to non-biochar (control) treatments. However, the pig digestate-derived biochar increased heavy metals in soil under all moisture regimes, increasing soil Cr by 21%, Ni by 43%, Cu by 55%, Zn by 70%, and Pb by 12%. The availability of macroelements also increased with the biochar applications under the optimum moisture regimes in both soil and plants, increasing Mg²⁺ by 11%, P by 4%, K⁺ by 50%, and Ca²⁺ by 56% in the soil, and Mg²⁺ by 13%, P by 69%, K⁺ by 29, and Ca²⁺ by 39% in plants. Biochar addition also improved chlorophyll fluorescence (CF) levels in the crop for the entire season (12^th to 62^nd day) and the aboveground crop biomass and dry matter contents both increased. Consequently, the use of pig manure digestate-derived biochar with N fertilizer under normal moisture conditions was able to reduce heavy metal availability to plants and thus could be used in contaminated soils to maintain better crop growth and development.