Modeling susceptibility to deforestation of remaining ecosystems in North Central Mexico with logistic regression

Determining underlying factors that foster deforestation and delineating forest areas by levels of susceptibility are of the main challenges when defining policies for forest management and planning at regional scale. The susceptibility to deforestation of remaining forest ecosystems (shrubland, temperate forest and rainforest) was conducted in the state of San Luis Potosi, located in north central Mexico. Spatial analysis techniques were used to detect the deforested areas in the study area during 1993-2007. Logistic regression was used to relate explanatory variables (such as social, investment, forest production, biophysical and proximity factors) with susceptibility to deforestation to construct predictive models with two focuses: general and by biogeographical zone.In all models, deforestation has positive correlation with distance to rainfed agriculture, and negative correlation with slope, distance to roads and distance to towns. Other variables were significant in some cases, but in others they had dual relationships, which varied in each biogeographical zone. The results show that the remaining rainforest of Huastecaregion is highly susceptible to deforestation. Both approaches show that more than 70% of the current rainforest area has high and very high levels of susceptibility to deforestation. The values represent a serious concern with global warming whether tree carbon is released to atmosphere. However, after some considerations, encouraging forest environmental services appears to be the best alternative to achieve sustainable forest management.     

Weather effect on thermal and energy performance of an extensive tropical green roof

This study investigated the weather effect on thermal performance of a retrofitted extensive green roof on a railway station in humid-subtropical Hong Kong. Absolute and relative (reduction magnitude) ambient and surface temperatures recorded for two years were compared amongst antecedent bare roof, green roof, and control bare roof. The impacts of solar radiation, relative humidity, soil moisture and wind speed were explored. The holistic green-roof effect reduced daily maximum tile surface temperature by 5.2 °C and air temperature at 10 cm height by 0.7 °C, with no significant effect at 160 cm. Green-roof passive cooling was enhanced by high solar radiation and low relative humidity typical of sunny summer days. High soil moisture supplemented by irrigation lowered air and vegetation surface temperature, and dampened diurnal temperature fluctuations. High wind speed increased evapotranspiration cooling of green roof, but concurrently cooled bare roof. Heat flux through green roof was also weather-dependent, with less heat gain and more heat loss on sunny days, but notable decline in both attributes on cloudy days. On rainy days, green roof assumed the energy conservation role with slight increase instead of reduction in cooling load. Daily cooling load was 0.9 kWh m^?2 and 0.57 kWh m^?2, respectively for sunny and cloudy summer days, with negligible effect on rainy days. The 484 m² green roof brought potential air-conditioning energy saving of 2.80 × 10⁴ kWh each summer, equivalent to electricity tariff saving of HK$2.56 × 10⁴ and upstream avoidance of CO₂ emission of 27.02 t at the power plant. The long-term environmental and energy benefits could justify the cost of green roof installation on public buildings.     

A cost-effective method for Illumina small RNA-Seq library preparation using T4 RNA ligase 1 adenylated adapters

Background

Deep sequencing is a powerful tool for novel small RNA discovery. Illumina small RNA sequencing library preparation requires a pre-adenylated 3?? end adapter containing a 5??,5??-adenyl pyrophosphoryl moiety. In the absence of ATP, this adapter can be ligated to the 3?? hydroxyl group of small RNA, while RNA self-ligation and concatenation are repressed. Pre-adenylated adapters are one of the most essential and costly components required for library preparation, and few are commercially available.

Results

We demonstrate that DNA oligo with 5?? phosphate and 3?? amine groups can be enzymatically adenylated by T4 RNA ligase 1 to generate customized pre-adenylated adapters. We have constructed and sequenced a small RNA library for tomato (Solanum lycopersicum) using the T4 RNA ligase 1 adenylated adapter.

Conclusion

We provide an efficient and low-cost method for small RNA sequencing library preparation, which takes two days to complete and costs around $20 per library. This protocol has been tested in several plant species for small RNA sequencing including sweet potato, pepper, watermelon, and cowpea, and could be readily applied to any RNA samples.     

Dietary protein concentration correlates in a complex way with glucose metabolism and growth performance in pregnant rats

We studied the influence of dietary protein concentration (PC) on the adaptation mechanism of maternal glucose metabolism to gestation, and on maternal body weight (BW) gain using pregnant rats fed 4% (low protein, LP), 10% (medium protein, MP) or 20% (high protein, HP) dietary protein concentration. Feed (FI), energy (EI) and protein (PI) intakes were recorded. Plasma glucose, insulin and GH were determined, and insulin:glucose (insulin resistance) and insulin:GH ratios computed. Correlation and regression analyses were used to determine the physiological relationships between metabolic and ponderal variables. MP dams with greater FI and EI (12%), and lower PI (44%) than HP dams showed similar maternal and fetal growth performance because of the maintained energy efficiency (EE). LP dams, with similar FI and EI, and lower PI (81%) than HP dams, failed to catch up due to the low EE. PC exerted a non-linear influence on BW gain, insulin and GH, through EI and EE modifications. The EI linearly influenced hormone concentrations with the maximum and minimum hormone response in MP and LP dams, respectively. Insulin resistance increased as PC decreased, whereas the GH lipolytic effect appeared to predominate over insulin action. Circulating hormones and metabolites affected nutrient partitioning between dam and fetus, with the result that the competing demands for materno-fetal growth of HP and MP dams, but not the LP dams, were satisfied. A deeper knowledge of the nature of the materno-fetal energy relationships will enhance the manipulation of the growth performance of the fetus in several animal species.     

美国目前和未来的保育猪饲养方案

在过去的20年内美国的猪产业发生了翻天覆地的变化。多址生产系统对畜群的健康和控制断奶仔猪链产生了极大的作用。然而一个成功的断奶仔猪营养方案其基本原则对于任何日龄断奶的仔猪来讲都是相似的。可以归纳成三点：①在断奶时,仔猪尽可能的体重大;②尽可能快的将日粮从复合日粮转化为简单日粮;③重点关注保育仔猪管理。此外,在美国过去的10年通过遗传选育的手段,使窝产仔数大约增加了1.5头,仔猪断奶的日龄也相应地增加到平均为19~23 d。当每头母猪产仔数增加以后,由于初生活仔数的增加,有更多体重轻的仔猪出生,这将是生产者所面临的挑战。因此,对生产者来说,了解影响初生体重轻的仔猪一生的生产性能以及收益的因素是非常必要的。     

Tree species exhibit complex patterns of distribution in bottomland hardwood forests

?Context

Understanding tree interactions requires an insight into their spatial distribution.

?Aims

We looked for presence and extent of tree intraspecific spatial point pattern (random, aggregated, or overdispersed) and interspecific spatial point pattern (independent, aggregated, or segregated).

?Methods

We established twelve 0.64-ha plots in natural bottomland hardwood stands in the southeastern USA.

?Results

Spatial point pattern analyses (Ripley’s K, L, and L ₁₂) indicated that, when species were combined, trees were frequently aggregated and less commonly overdispersed. Plots with larger trees were more likely to exhibit overdispersion, confirming a shift to this pattern as trees grow. The intraspecific pattern of cherrybark oak and water oak was either aggregated or random. Sweetgum was aggregated on all plots and always at smaller distances (less than 5 m) than the two oak species. Intraspecific overdispersion was very rare. Interspecific segregation among the two oak species was more commonly observed (six plots) than aggregation (one plot). Cherrybark oak and sweetgum were segregated at some scale on seven of the 12 plots and aggregated on only two plots.

?Conclusion

The results from the analyses suggest that strong interspecific competition may result in segregation of trees from different species, while weaker intraspecific competition may lead to aggregations of conspecifics.     

Pulmonary pharmacokinetics of tulathromycin in swine. Part I: Lung homogenate in healthy pigs and pigs challenged intratracheally with lipopolysaccharide of Escherichia coli

The objective of the study was to assess the pharmacokinetics of tulathromycin in lung tissue homogenate (LT) and plasma from healthy and lipopolysaccharide (LPS)‐challenged pigs. Clinically healthy pigs were allocated to two dosing groups of 36 animals each (group 1 and 2). All animals were treated with tulathromycin (2.5 mg/kg). Animals in group 2 were also challenged intratracheally with LPS from Escherichia coli (LPS‐Ec) 3 h prior to tulathromycin administration. Blood and LT samples were collected from all animals during 17‐day post‐tulathromycin administration. For LT, one sample from the middle (ML) and caudal lobes (CL) was taken. The concentration of tulathromycin was significantly lower in the ML after the intratracheal administration of LPS‐E. coli (P < 0.02). In healthy pigs and LPS‐challenged animals, the distribution of the drug into the lungs was rapid and persisted at high levels for 17‐day postadministration. The distribution of the drug within the lung seems to be homogenous, at least between the middle and caudal lobes within dosing groups. The concentration versus time profile of the drug and pharmacokinetic parameters in two different lung areas (middle and caudal lobe) were consistent within the groups. The clinical significance of these findings is unknown.     

A Conus regularis Conotoxin with a Novel Eight-Cysteine Framework Inhibits CaV2.2 Channels and Displays an Anti-Nociceptive Activity

A novel peptide, RsXXIVA, was isolated from the venom duct of Conus regularis, a worm-hunting species collected in the Sea of Cortez, México. Its primary structure was determined by mass spectrometry and confirmed by automated Edman degradation. This conotoxin contains 40 amino acids and exhibits a novel arrangement of eight cysteine residues (C-C-C-C-CC-CC). Surprisingly, two loops of the novel peptide are highly identical to the amino acids sequence of ω-MVIIA. The total length and disulfide pairing of both peptides are quite different, although the two most important residues for the described function of ω-MVIIA (Lys2 and Tyr13) are also present in the peptide reported here. Electrophysiological analysis using superior cervical ganglion (SCG) neurons indicates that RsXXIVA inhibits Ca_V2.2 channel current in a dose-dependent manner with an EC₅₀ of 2.8 μM, whose effect is partially reversed after washing. Furthermore, RsXXIVA was tested in hot-plate assays to measure the potential anti-nociceptive effect to an acute thermal stimulus, showing an analgesic effect in acute thermal pain at 30 and 45 min post-injection. Also, the toxin shows an anti-nociceptive effect in a formalin chronic pain test. However, the low affinity for Ca_V2.2 suggests that the primary target of the peptide could be different from that of ω-MVIIA.