Draft genome sequence of the sexually transmitted pathogen Trichomonas vaginalis

We describe the genome sequence of the protist Trichomonas vaginalis, a sexually transmitted human pathogen. Repeats and transposable elements comprise about two-thirds of the approximately 160-megabase genome, reflecting a recent massive expansion of genetic material. This expansion, in conjunction with the shaping of metabolic pathways that likely transpired through lateral gene transfer from bacteria, and amplification of specific gene families implicated in pathogenesis and phagocytosis of host proteins may exemplify adaptations of the parasite during its transition to a urogenital environment. The genome sequence predicts previously unknown functions for the hydrogenosome, which support a common evolutionary origin of this unusual organelle with mitochondria.     

Feeding behavior of finishing goats fed diets containing detoxified castor meal,co-product of the biodiesel industry

An investigation was made into the feeding behavior of goats to evaluate the effects of a detoxified castor bean meal in the diet of goats. Thirty-six ½ crossbred Boer goats were used, with an average weight of 20?±?3.2 kg. A completely randomized design was used with four treatments (diets with of 0, 100, 200, and 300 g detoxified castor bean meals/kg dry matter) and nine replicates. Castor bean meal was detoxified using calcium oxide. Diets were formulated to be isonitrogenous, and the forage:concentrate ratio was 50:50. The feeding behavior was observed on the 17th, 45th, and 70th days of the experiment. For the evaluation of feeding behavior (feeding, idle, and rumination times), the animals were observed in 5-min intervals for 24 h. The addition of detoxified castor bean meal did not change (P?>?0.05) the evaluated behavioral variables. Linear reduction was observed (P?<?0.05) in the efficiencies of feeding and rumination, expressed in g dry matter/h. The variables related to the time series discretization of the feeding behavior of goats did not change (P?>?0.05) with the inclusion of detoxified castor bean meal. The inclusion of detoxified castor bean meal in growing goats’ diets does not change the feeding, rumination, and idle times, however, decreases intake, feeding, and rumination efficiencies of dry matter.

     

Geostatistical analysis of fruit yield and detachment force in coffee

The aim of this study was to use geostatistical analysis to evaluate the spatial variation in the detachment force of coffee fruit and coffee yield by variograms and kriging for precision agriculture. This study was conducted at Brej?o farm, Três Pontas, Minas Gerais, Brazil. The detachment force of green and mature coffee fruit was measured with a prototype dynamometer and georeferenced. The yield data were obtained from manual harvesting and were georeferenced. The data were evaluated by variograms estimated by residual maximum likelihood (REML), which provided a satisfactory approach for modeling all the variables with a small sample size. Spherical and exponential models were fitted, the first provided the better fit to mature fruit detachment force and the latter provided the better fit to coffee yield and green fruit detachment force. They were used to describe the structure and magnitude of spatial variation in the variables studied. Kriged estimates were obtained with the best fitting variogram models and mapped. The statistical and geostatistical analyses enabled us to characterize the spatial variation of the detachment force of green and mature coffee fruit and coffee yield and to visualize the spatial relations among these variables. The precision agriculture techniques used in this paper to collect, map and analyze the variables studied will help coffee farmers to manage their fields. Maps of coffee yield will enable farmers to apply nutrients site-specifically and manage harvesting either manually or mechanically. In addition, maps of detachment force of coffee fruit can enable farmers to harvest coffee selectively by choosing the appropriate places and the right time to start. This will improve the quality of the final product and also increase profits.     

A rapid sample screening method for authenticity control of whiskey using capillary electrophoresis with online preconcentration

The present study aimed to develop a methodology using capillary electrophoresis for the determination of sinapaldehyde, syringaldehyde, coniferaldehyde, and vanillin in whiskey samples. The main objective was to obtain a screening method to differentiate authentic samples from seized samples suspected of being false using the phenolic aldehydes as chemical markers. The optimized background electrolyte was composed of 20 mmol L(-1) sodium tetraborate with 10% MeOH at pH 9.3. The study examined two kinds of sample stacking, using a long-end injection mode: normal sample stacking (NSM) and sample stacking with matrix removal (SWMR). In SWMR, the optimized injection time of the samples was 42 s (SWMR42); at this time, no matrix effects were observed. Values of r were >0.99 for the both methods. The LOD and LOQ were better than 100 and 330 mg mL(-1) for NSM and better than 22 and 73 mg L(-1) for SWMR. The CE-UV reliability in the aldehyde analysis in the real sample was compared statistically with LC-MS/MS methodology, and no significant differences were found, with a 95% confidence interval between the methodologies.     

Chlamydophila psittaci in free-living Blue-fronted Amazon parrots (Amazona aestiva) and Hyacinth macaws (Anodorhynchus hyacinthinus) in the Pantanal of Mato Grosso do Sul, Brazil

Chlamydophila psittaci (C. psittaci) infection was evaluated in 77 free-living nestlings of Blue-fronted Amazon parrots (Amazona aestiva) and Hyacinth macaws (Anodorhynchus hyacinthinus) in the Pantanal of Mato Grosso do Sul, Brazil. Tracheal and cloacal swab samples from 32 wild parrot and 45 macaw nestlings were submitted to semi-nested PCR, while serum samples were submitted to complement fixation test (CFT). Although all 32 Amazon parrot serum samples were negative by CFT, cloacal swabs from two birds were positive for Chlamydophila DNA by semi-nested PCR (6.3%); these positive birds were 32 and 45 days old. In macaws, tracheal and cloacal swabs were positive in 8.9% and 26.7% of the samples, respectively. Complement-fixing antibodies were detected in 4.8% of the macaw nestlings; macaw nestlings with positive findings were between 33 and 88 days old. These results indicate widespread dissemination of this pathogen in the two evaluated psittacine populations. No birds had clinical signs suggestive of chlamydiosis. To the best of our knowledge, this is the first report on C. psittaci in free-living Blue-fronted Amazon parrots and Hyacinth macaws in Brazil.     

Bacillus amyloliquefaciens BNM122, a potential microbial biocontrol agent applied on soybean seeds,causes a minor impact on rhizosphere and soil microbial communities

The increase in soybean productivity has contributed to a greater use of agrochemicals, which cause major problems, such as soil and water pollution and reduction of biodiversity, and have a negative impact on non-target species. The development of microbial biocontrol agents for soybean diseases can help to reduce pesticide abuse. Bacillus amyloliquefaciens BNM122 is a potential microbial biocontrol agent able to control the damping-off caused by Rhizoctonia solani when inoculated in soybean seeds, both in a plant growth chamber and in a greenhouse. In this study, we report the effect of soybean seed treatments with strain BNM122 or with two fungicides (thiram and carbendazim) on the structure and function of the bacterial community that colonizes the soybean rhizosphere. Also, soybean root nodulation by Bradyrhizobium japonicum, mycorrhization by arbuscular mycorrhizal fungi and plant growth were evaluated. We used the r- and K-strategist concept to evaluate the ecophysiological structure of the culturable bacterial community, community-level physiological profiles (CLPP) in Biolog? EcoPlates to study bacterial functionality, and the patterns of 16S RNA genes amplified by PCR and separated by denaturing gradient gel electrophoresis (PCR–DGGE) to assess the genetic structure of the bacterial community. Neither the ecophysiological structure nor the physiological profiles of the soybean rhizosphere bacterial community showed important changes after seed inoculation with strain BNM122. On the contrary, seed treatment with fungicides increased the proportions of r-strategists and altered the metabolic profiles of the rhizosphere culturable bacterial community. The genetic structure of the rhizosphere bacterial community did not show perceptible changes between treated and non-treated seeds. Regarding the bacterial and fungal symbioses, seed treatments did not affect soybean nodulation, whereas soybean mycorrhization significantly decreased (P < 0.05) in plants obtained from seeds treated with strain BNM122 or with the fungicides. However, a higher negative effect was observed in plants which seeds were treated with the fungicides. Plant growth was not affected by seed treatments.It can be concluded that soybean seed treatment with B. amyloliquefaciens BNM122 had a lesser effect on soil microbial community than that with the fungicides, and that these differences may be attributed to the less environmental persistence and toxic effects of the strain, which deserve further studies in order to develop commercial formulations.     

Nitrogen budget in a soil-plant system after brachiaria grass desiccation

Abstract

Brachiaria spp. have been grown in a variety of cropping systems and are often terminated with herbicides, which may cause nitrogen (N) loss from the soil-plant system. In this study ammonia (NH₃-N) loss by shoots and N balance in a soil-plant system were determined after desiccation of palisade grass (Brachiaria brizantha (Hochst. ex A. Rich) Stapf, cv. Marandu), signalgrass (Brachiaria decumbens Stapf), humidicola (Brachiaria humidicola (Rendle) Schweick) and Congo grass (Brachiaria ruziziensis Germain et Evrard). The grasses were grown in pots filled with an Oxisol in a greenhouse. Sixty days after planting, the plants were desiccated with glyphosate. Analyses were performed on plant and soil at desiccation and then at 7, 14, 21 and 28 days after desiccation in order to assess NH₃-N losses by shoots and to estimate the N balance in the system. Total nitrogen (Total-N) concentration in shoots and roots of brachiarias decreased after desiccation, thereby reducing the amount of N in plants of the four brachiaria species. However, as most of the N lost by plants was released into the soil, N losses from the soil-plant system were small compared with the total N in the system: 1.2, 0.5, 0.4 and 1.4% for palisade grass, signalgrass, humidicola and Congo grass, respectively. N losses as NH₃ from the soil-plant system after desiccation with glyphosate varied among brachiaria species, ranging from 0.8 to 2.0 g m^?2 kg^?1, and accounted for 30–80% of total loss.