Axonal self-destruction and neurodegeneration

Neurons seem to have at least two self-destruct programs. Like other cell types, they have an intracellular death program for undergoing apoptosis when they are injured, infected, or not needed. In addition, they apparently have a second, molecularly distinct self-destruct program in their axon. This program is activated when the axon is severed and leads to the rapid degeneration of the isolated part of the cut axon. Do neurons also use this second program to prune their axonal tree during development and to conserve resources in response to chronic insults?     

Early marine survival and movements of escaped Atlantic salmon Salmo salar L. juveniles from a land‐based smolt farm during autumn

The aim of this study was to examine early marine survival and movements of simulated escaped Atlantic salmon Salmo salar L. pre‐smolt and smolt from a commercial smolt farm during autumn. One‐third of the pre‐smolt most likely died in the immediate vicinity of the release location, whereas the corresponding mortality for smolts was lower (8.5%) during the 5‐week study period. The surviving pre‐smolt left the farm area after 2–3 days, predominantly along the shore. In contrast, most of the surviving smolts left the farm area during the first day and 54% seemed to move away from the shore and adopt a more pelagic movement pattern than pre‐smolt. The number of surviving fish recorded in the fjord decreased throughout the study period, possibly due to a combination of fish migrating out of the fjord or undetected mortality. Compared with existing knowledge on migration of released farmed smolts during spring, our results indicate less directional and slower movement rates during autumn. Only two of the tagged fish were detected upstream in the rivers following release. A rapid dispersion of escapees indicates that the potential for recapturing escapees is limited unless recapture efforts are initiated immediately after escape. Hence, there is a need for development of technology that detects and prevents escapees to enter the sea.     

Food consumption, eating behaviour and self-esteem among single v. married and cohabiting mothers and their 12-year-old children

OBJECTIVE: Being a single mother may have implications for health behaviours that can also affect the child. More information about the food intakes and body weights in single v. married/cohabiting mothers and in their children is needed. Psychological dimensions of eating behaviour and self-esteem are also of relevance to explore for single mothers and their children. DESIGN: Food style patterns were assessed by self-reported consumption of fruits, vegetables, sweets and soft drinks. Eating behaviour was measured by the Dutch Eating Behaviour Questionnaire and self-esteem by the Harter self-perception scale. The participants were 1781 mothers and their 12-year-old children, of whom 278 mothers (16 %) were single. RESULTS: Single mothers had lower intake of fruits and vegetables and lower self-worth compared to the married and cohabiting mothers, controlling for age, education and BMI. Although single mothers did not have a higher BMI, their daughters were heavier than girls from complete families. Daughters to single mothers furthermore had a higher intake of soft drinks, higher levels of restrained eating and lower self-worth. No such difference was found for the boys. CONCLUSIONS: A lower sense of self-worth and lower intake of fruit and vegetables in single mothers could be seen in the context of the social disadvantages and less social support. Girls may be more inclined to be affected by family status than the boys, seen in a more unfortunate psychological pattern and a higher body weight. Boy's health behaviours may be more unaffected by living in single families.     

Design and Validation of an Assay for Isotope Ratio Mass Spectrometry Analysis of Biologically Relevant Dissolved and Heat-Extracted Organic Carbon with Neutral Potassium Phosphate Buffer

Labile soil dissolved organic carbon (DOC) and heat-extracted carbon (HEC) are sensitive indicators of changing soil organic carbon (SOC) stocks. Isotope ratio mass spectrometry (IRMS) is an important tool for studying SOC turnover and soil biological function. Several complications are involved in measuring DOC/HEC, for example salt ionic strength; solution pH; and anionic damage to elemental analyzer-IRMS. We evaluated a method for DOC/HEC analysis with 0.1 M potassium phosphate buffer (PPB). This method was strongly correlated with commonly used carbon (C) extractants for C quantification. Carbon-13 comparisons between DOC/HEC extracted with Milli-Q water and PPB were similar. The δ¹³C (‰) values of particulate OC and DOC were similar, whereas the relationship between humic OC and HEC was soil specific. An incubation experiment demonstrated that DOC/HEC δ¹³C (‰) successfully explained respired microbial carbon dioxide over 90 days. We conclude that this method represents an alternative for DOC/HEC quantification and δ¹³C (‰) analyses.     

Methylation of tRNAAsp by the DNA methyltransferase homolog Dnmt2

The sequence and the structure of DNA methyltransferase-2 (Dnmt2) bear close affinities to authentic DNA cytosine methyltransferases. A combined genetic and biochemical approach revealed that human DNMT2 did not methylate DNA but instead methylated a small RNA; mass spectrometry showed that this RNA is aspartic acid transfer RNA (tRNA(Asp)) and that DNMT2 specifically methylated cytosine 38 in the anticodon loop. The function of DNMT2 is highly conserved, and human DNMT2 protein restored methylation in vitro to tRNA(Asp) from Dnmt2-deficient strains of mouse, Arabidopsis thaliana, and Drosophila melanogaster in a manner that was dependent on preexisting patterns of modified nucleosides. Indirect sequence recognition is also a feature of eukaryotic DNA methyltransferases, which may have arisen from a Dnmt2-like RNA methyltransferase.     

Anthocyanins in berries of ribes including gooseberry cultivars with a high content of acylated pigments

Consumption of berries from various sources including the genus Ribes has been associated with diverse potential health benefits. The 14 examined cultivars of European gooseberry (R. grossularia L.) contained in various proportions the 3-glucoside (3), 3-rutinoside (4), 3-xyloside (7), 3-O-beta-(6' '-E-caffeoylglucopyranoside) (8), and 3-O-beta-(6' '-E-p-coumaroylglucopyranoside) (10) of cyanidin and the 3-rutinoside (6) and 3-glucoside of peonidin (5). Pigments 3, 4, delphinidin 3-rutinoside (2), delphinidin 3-glucoside (1), and minor amounts of 6, 7, and 10 were found in red flowering currant (R. sanguineum Pursh). Golden currant (R. aureum Pursh) contained 3, 4, and trace amounts of 1, 6, and 7, while alpine currant (R. alpinum L.) contained 3, 4, and trace amounts of 10. The major anthocyanins in two cultivars of jostaberries (R. x nidigrolaria Bauer), 1-4, 8, and 10, reflected that this hybrid contained the major anthocyanins of both parents, black currant and gooseberry. This is the first complete identification of 8 and the ring size of the sugar of 10. Pigment 9 was tentatively identified as cyanidin 3-(6' '-Z-p-coumaroylglucoside). This new pigment occurred in minor amounts (<2%) in all R. grosssularia and R. x nidigrolaria cultivars. No commercially available berries have been reported to contain such high proportions of aromatic acylated anthocyanins as found in the gooseberry cultivars "Sams?", "Hinnom?ki Red", "Taastrup", "Lofthus", and "Glendal", which are in this context the most obvious candidates for consumption, colorant, and breeding programs.     

The Dominant white mutation in the PMEL17 gene does not cause visual impairment in chickens

Objective  To examine whether the Dominant white mutation (causing a hypopigmented phenotype in chicken) affects the visual ability and gives rise to ocular abnormalities in chickens ( Gallus gallus ).
Procedure  Chickens homozygous for either the Dominant white mutation or the wild-type alleles were tested in a visual contrast behavioral test and subjected to histological and ophthalmologic examination.
Results  There were no differences between the genotypes in the visual contrast behavioral test, and there were no abnormal structures among the Dominant white chickens in the ophthalmic examination. The histological sections from the Dominant white chickens did not differ from the wild-type chicken in structure, photoreceptor density, or RPE pigmentation.
Conclusions  The results indicate that the Dominant white mutation in PMEL17 does not seem to affect the visual ability or eye structures in chickens.     

Modeling of the fine‐scale temperature response of arylsulfatase activity in soil

Fine‐scale (1.0–2.2 °C) temperature dependence of soil arylsulfatase activity (arylsulfate sulfohydrolase, EC 3.1.6.1) was measured at 0 to 75 °C in a Danish sandy, arable soil. Assays were done with field‐moist soil samples in the absence of toluene as plasmolytic agent – a procedure that primarily measures the extracellular enzymes. The aim was to evaluate the use of temperature models to describe the temperature response of soil arylsulfatase activity. In addition, we searched for increases in activity at high temperatures (e.g., 50–60 °C), which might be associated with unmasking (exposure) of intracellular enzymes. Arylsulfatase activities ranged from 1.1 to 60.3 μg p‐nitrophenol (g dry weight soil)^–1 h^–1, with an optimum temperature at 58.1 °C. The temperature response below 58.1 °C could be described by the Arrhenius equation (r² = 0.978, n = 83) and the simple Ratkowsky equation (r² = 0.977, n = 83). The expanded Ratkowsky equation, which covered the entire temperature range (0–75 °C), was less satisfactory (r² = 0.958, n = 90) because the model underestimated the reaction rates near the optimum temperature. The activation energy (E_a) calculated from the Arrhenius equation was 42.2 kJ mol^–1. This was higher than previously found for other soils (16.5–34.7 kJ mol^–1), possibly due to the use of toluene in these studies. Further analysis of the temperature response showed that no increase in activity occurred due to potential unmasking of intracellular enzymes by disintegration of bacterial cell membranes at high temperatures. Thus, the use of high incubation temperatures did not facilitate the differentiation between intra‐ and extracellular enzyme activity.     

Influence of cultivar, maturity, and sampling on blackberry (Rubus L. Hybrids) anthocyanins, polyphenolics, and antioxidant properties

Total anthocyanin pigments increased from 74.7 to 317 mg/100 g fresh weight (FW) from underripe to overripe for Marion blackberries and from 69.9 to 164 mg/100 g FW for Evergreen blackberries. Total phenolics did not show a marked change with maturity with values slightly decreasing from underripe to ripe. Antioxidant activities, while increasing with ripening, also did not show the marked change that total anthocyanins exhibited. The impact of variation due to plots, subsampling, sample preparation, and measurement on Marion composition was examined in detail. Plot-to-plot and sample differences were the major contributors to variation, with sample preparation being an important contributor for some parameters. Measurement variation was a relatively small component of the total variation. Total anthocyanins for 11 blackberry cultivars ranged from 131 to 256 mg/100 g FW (mean = 198), total phenolics ranged from 682 to 1056 mg GAE/100 g FW (mean = 900), oxygen radical absorbance capacity ranged from 37.6 to 75.5 micromol TE/g FW (mean = 50.2), and ferric reducing antioxidant power ranged from 63.5 to 91.5 micromol TE/g FW (mean = 77.5).     

Integration of species persistence, costs and conflicts: An evaluation of tree conservation strategies in Cambodia

Cambodia forms part of the Indo-Burma hotspot. Its extent of biodiversity, however, is subject to considerable uncertainty, as there has been little systematic collection of flora and fauna. During the Khmer Rouge regime institutions were banned, academics were prosecuted and written documentation systematically destroyed. Compared with neighbouring countries Cambodia has a low population density and relatively large natural areas that are still intact. However, deforestation is expanding rapidly and a significant but un-estimated area of forest has been degraded by development of agro-industries, encroachment, illegal logging, over-harvesting and forest fire as well as the use of chemicals during war. The purpose of the paper is to: (i) apply reserve selection methods to design more robust conservation networks when knowledge of species occurrence is incomplete and habitat is threatened, and (ii) evaluate the usefulness of systematic conservation planning in a developing country where data are limited and institutions for implementation are weak. This study investigates the performance of four non-probabilistic strategies: (i) a so-called ‘rule of thumb’, (ii) hotspot, (iii) minimum cost representation, and (iv) maximum coverage; and one probabilistic design strategy, i.e. maximum expected coverage. The maximum expected coverage approach is between 15% and 24% more efficient than the non-probabilistic strategies. Finally, the relevance of such tools to real-world conservation planning in Cambodia is investigated. By incorporating experts in the generation of data, running the models and setting up premises, they acknowledge that it is possible to contribute to more systematic conservation planning in developing countries.