Estimating the spatial scales of landscape effects on abundance

Context

Spatial variation in abundance is influenced by local- and landscape-level environmental variables, but modeling landscape effects is challenging because the spatial scales of the relationships are unknown. Current approaches involve buffering survey locations with polygons of various sizes and using model selection to identify the best scale. The buffering approach does not acknowledge that the influence of surrounding landscape features should diminish with distance, and it does not yield an estimate of the unknown scale parameters.

Objectives

The purpose of this paper is to present an approach that allows for statistical inference about the scales at which landscape variables affect abundance.

Methods

Our method uses smoothing kernels to average landscape variables around focal sites and uses maximum likelihood to estimate the scale parameters of the kernels and the effects of the smoothed variables on abundance. We assessed model performance using a simulation study and an avian point count dataset.

Results

The simulation study demonstrated that estimators are unbiased and produce correct confidence interval coverage except in the rare case in which there is little spatial autocorrelation in the landscape variable. Canada warbler abundance was more highly correlated with site-level measures of NDVI than landscape-level NDVI, but the reverse was true for elevation. Canada warbler abundance was highest when elevation in the surrounding landscape, defined by an estimated Gaussian kernel, was between 1300 and 1400 m.

Conclusions

Our method provides a rigorous way of formally estimating the scales at which landscape variables affect abundance, and it can be embedded within most classes of statistical models.

     

Genetic correlations between similar traits in the Danish and Swedish Warmblood sport horse populations

Genetic correlations between phenotypically similar or related traits tested at young horse performance tests for Danish Warmblood (DWB) and Swedish Warmblood (SWB) horses were calculated using Multi-trait Across Country Evaluation (MACE). Data comprised stallions with an estimated breeding value (EBV) from the national genetic evaluations (NGE) based on at least 10 progeny tested in performance tests, and the ancestors of those stallions in two generations. The DWB data included 349 stallions and the SWB data 426 stallions. Of these, 28 had EBVs in both DWB and SWB. Additionally 151 pedigree animals were common between DWB and SWB. The dependent variables used were NGE results of stallions born 1980 and later, which reduced the number of common stallions with EBVs to 23. The genetic correlations were very high for jumping traits (0.99) and dressage related traits (0.89–0.97). For conformation traits correlations varied between 0.10 and 0.98. Because of the high genetic correlations and frequent use of same or closely related foreign stallions, breeders of both DWB and SWB would benefit from using the NGEs for performance traits across countries, although the genetic correlations do not consider differences in genetic merit levels between the populations. It would be feasible to perform a joint genetic evaluation using MACE, which would improve the reliability of estimated breeding values, and enable ranking of all stallions according to the national scale of each country.     

A strategy for control of bovine leukemia virus infection: test and corrective management

Test and corrective management was applied in one dairy herd (130 milking cows) to control bovine leukemia virus infection. It consisted of: raising uninfected calves in order to establish a pool of uninfected replacement heifers, preventing transmission of bovine leukemia virus through transfer of blood from animal to animal and closing the herd. Regular herd testing was combined with selected changes in herd management. These procedures have been followed since January 1979. Prevalence of antibodies (as determined by gel-immunodiffusion) has declined markedly since the program was implemented.     

Effect of floor cooling on performance of lactating sows during summer

Forty Landrace × Large White lactating sows were used to evaluate the effects of cooling of the floor when maintained under high temperature conditions during summer on their productive and reproductive performance. The sows were allocated in a completely randomized design with two treatments with 20 replicates according to parity number and body weight, with each animal being considered an experimental unit. The treatments consisted of cooling of the floor under the sow with water circulation at about 17 °C and no cooling. The resulting temperatures of the floor were 27.6 and 35.8 °C for the cooled and the control treatments, respectively. The sows from both treatments were exposed to average maximum and minimum environmental temperatures of 26.9 and 20.8 °C, respectively. Sows maintained on a cooled floor had a higher feed intake (6.47 vs. 5.61 kg/day; P < 0.01). Despite this higher intake, sows maintained on a cooled floor had higher body weight and body protein losses during the lactation period (P < 0.01) in connection with a higher milk yield and subsequent growth of the litter (2280 vs. 1798 g/day; P < 0.01). There was an effect of treatment on rectal temperature, surface temperatures and respiratory rate (P < 0.01) with lower values in sows submitted to floor cooling. It is concluded that floor cooling under the lactating sow improves its productive and reproductive performance, as well as the performance of its litter.     

Relationships Between Blueberry Flower Age, Pollination, and Conidial Infection by Monilinia vaccinii-corymbosi

ABSTRACT Monilinia vaccinii-corymbosi infects open blueberry flowers via the gynoecial pathway, leading to mummification of the developing fruit. To determine the effect of flower age on infection, stigmata were inoculated with conidia of M. vaccinii-corymbosi between 0 and 5 days after anthesis, fungal growth rates through the stylar canal were measured in detached flowers in the laboratory, and fruit disease incidence was determined in plants grown in the greenhouse. Hyphal growth rates were greatest in flowers inoculated on the day of anthesis, declined linearly with increasing flower age at inoculation (r = 0.921; P < 0.0001; n = 12), and were unaffected by the presence or absence of pollen applied at the time of inoculation. In greenhouse-grown plants, the percentage of infected fruit decreased exponentially with increasing flower age at inoculation (R = 0.878; P = 0.0057; n = 10), with disease incidence ranging from 76.4% for flowers inoculated on the day of anthesis to 15.5% for those inoculated 4 days later. Fruit disease incidence in the greenhouse was linearly correlated with hyphal growth rates in detached flowers (r = 0.985; P < 0.0001; n = 9), justifying the use of detached flowers when investigating gynoecial infection by M. vaccinii-corymbosi. In separate experiments, the effects of timing and sequence of pollination and inoculation on hyphal growth rates through the stylar canal and on disease incidence were investigated. Application of pollen to detached flowers 1 or 2 days before inoculation reduced hyphal growth rates by between 14.0 and 42.9% compared with flowers that received pollen and conidia simultaneously. Similarly, reductions in fruit disease incidence by between 9.5 and 18.3% were observed on greenhouse-grown plants for pollination-to-inoculation intervals ranging from 1 to 4 days. These results document that newly opened flowers are most susceptible to infection by M. vaccinii-corymbosi and that fruit disease incidence is reduced if pollination occurs at least 1 day before inoculation. Strategies that lead to early pollination of newly opened flowers may be useful for managing mummy berry disease in the field.     

Relating tradable credits for biodiversity to sustainability criteria in a dynamic landscape

Tradable biodiversity credit systems provide flexible means to resolve conflicts between development and conservation land-use options for habitats occupied by threatened or endangered species. We describe an approach to incorporate the influence of habitat fragmentation into the conservation value of tradable credits. Habitat fragmentation decreases gene flow, increases rates of genetic drift and inbreeding, and increases probabilities of patch extinction. Importantly, tradable credit systems will change the level of fragmentation over time for small and/or declining populations. We apply landscape equivalency analysis (LEA), a generalizable, landscape-scale accounting system that assigns conservation value to habitat patches based on patch contributions to abundance and genetic variance at landscape scales. By evaluating habitat trades using two models that vary the relationship between dispersal behaviors and landscape patterns, we show that LEA provides a novel method for limiting access to habitat at the landscape-scale, recognizing that the appropriate amount of migration needed to supplement patch recruitment and to offset drift and inbreeding will vary as landscape pattern changes over time. We also found that decisions based on probabilities of persistence alone would ignore changes in migration, genetic drift, and patch extinction that result from habitat trades. The general principle of LEA is that habitat patches traded should make at least equivalent contributions to rates of recruitment and migration estimated at a landscape scale. Traditional approaches for assessing the “take” and “jeopardy” standards under the Endangered Species Act based on changes in abundance and probability of persistence may be inadequate to prevent trades that increase fragmentation.     

Epidemiology of porcine non-specific colitis on Scottish farms

The objective of this study was to investigate epidemiological risk factors for porcine non-specific colitis (NSC). Forty-seven Scottish pig farms, with and without a clinical history of diarrhoea during the growing period (15-40 kg), were selected. The study included farm visits, clinical inspection of pigs, completion of farm management questionnaires, pathological tests into the cause of the diarrhoea and analysis of the non-starch polysaccharide (NSP) content of feeds. The results from 17 farms designated as NSC and 10 control farms suggest dietary associations with NSC. Farms with NSC fed diets with significantly higher levels of NSPs, especially containing the sugars glucose, arabinose and xylose. Few management factors were identified, although the high prevalence of infectious colitis reduced the power of the study.     

Early development of artificially spawned southern mullet,Liza richardsonii (Smith, 1846)

The embryonic development of artificially spawned southern mullet, Liza richardsonii, eggs and the development of the larvae to 46 days are described and illustrated using drawings and photographs. The floating eggs hatched in sea water at 18–24°C after 46–60 h. Newly stripped eggs usually had more than one oil droplet (up to 16) which merged during development. Free embryos averaged 2,36 mm at hatching and had distinct yellow pigment.     

Coxsackievirus B4 myocarditis in an orangutan.

A 37-year-old female orangutan died at the zoological garden. Autopsy examination demonstrated severe coxsackievirus B4 myocarditis immunohistochemically as a cause of the death. Apoptosis of the cardiac muscle cells was observed using the TdT-mediated dUTP-biotin nick endo labeling method and was considered to play a role in the myocarditis. Congestion of the liver and both lungs due to cardiac failure was also observed. Coxsackievirus infection is found frequently in the Okinawan human population. The present orangutan's infection might have come from visitors who were allowed to go near the orangutan. Malignant tumors, severe suppurative infections, and intestinal parasite infections were not observed. Epstein-Barr virus DNA was detected in lymph nodes, but there was no Burkitt's lymphoma.     

Conservation of the European Mink (Mustela lutreola): Focus on Reproduction and Reproductive Technologies

The European mink ( Mustela lutreola ) is a small mammal, which belongs to the Mustelidae family ( Carnivora) . Earlier, the range of distribution of this species encompassed much of the European continent. During the 20th century, the numbers of European mink declined and the range of its distribution became reduced to three fragmented populations; today this species faces extinction. The urgent necessity for effective conservation efforts to protect the European mink is accepted by the governmental organizations as well as scientific communities of most European countries. In this paper, the reasons for the disappearance of European mink are reviewed and results of past conservation efforts based on captive breeding and reintroduction programmes are critically evaluated in the broad context of modern concepts of conservation genetics and reproductive biology. The data recently obtained on the reproduction and pre-implantation development of European mink and the prospects of incorporation of modern reproductive technologies into the conservation programme of this species are discussed.