Quantifying growth in maricultured corals using photogrammetry

In coral mariculture, growth is one of the most common ways to track success. However, numerous methods of monitoring coral growth make comparative studies challenging. A literature review of 39 studies from 1982 to 2017 indicated that the most predominant non‐invasive methods used were linear and areal measurement and these were evaluated for their accuracy using nursery‐reared corals. The monthly change in linear and areal growth rates of six coral species (n = 215), Pocillopora acuta, Hydnophora rigida, Merulina ampliata, Podabacia crustacea, Echinopora lamellosa and Platygyra sinensis were measured via photogrammetry. We tested whether the planar area of coral colonies can be estimated using three geometric formulas of linear measurements. Based on the literature review, the six types of measurement methods were namely linear, volume, weight, area, count of polyps/branches and calcification, in decreasing order of application. Our results showed that the change in area calculated by geometric mean diameter (GMD) formulas provided the most accurate estimation among the three formulas and was strongly correlated with planar area (R² ≥ .60; p < .05) for all coral species, except E. lamellosa and Pl. sinensis. However, our findings suggest that it is not ideal to use geometric formulas to estimate the change in area. Instead, we posit that areal photogrammetry represents the simplest yet accurate non‐invasive method for rapid monitoring of extensive areas of corals in situ. Lastly, we discuss the recommendations and limitations for areal photogrammetry.     

Rotifers enriched with iodine,copper and manganese had no effect on larval cod (Gadus morhua) growth,mineral status or redox system gene mRNA levels

It currently remains unclear if rotifers contain sufficient mineral levels to meet larval fish requirements. In this study, rotifers were enriched with a commercial enrichment (control), or with additional iodine, iodine and copper, or iodine, copper and manganese, and the effects of feeding these rotifers to Atlantic cod (Gadus morhua) larvae from 3 to 18 days post hatch were investigated. Rotifer enrichment with minerals was successful, but Mn enrichment also increased rotifer zinc levels. No differences were observed between treatments in larval growth or survival, or in the mRNA levels in the majority of the redox system genes analysed. Only Zn levels increased in cod larvae in response to mineral enrichment of rotifers. Apart from Zn, little evidence was found to suggest that cod larvae require increased concentrations above the control rotifer levels of the essential elements studied here.     

Food habits of striped hyena(Hyaena hyaena) in a semi-arid conservation area of India

Striped hyena(Hyaena hyaena) is a near-threatened large carnivore known to occur in arid and semi-arid landscapes in many parts of the world. Its population is declining globally and ecological information is required urgently to meet their conservation needs. We studied the diet pattern of the striped hyena in the semi-arid Gir National Park and Sanctuary(GNPS), western India. Prey items eaten by the striped hyena were identified from scats. Around 44.4% scats represented single to three mammalian preys while 55.6% of them represented four preys to seven preys. A variety of food items were identified including mammals, birds, insects and vegetable matters. Scats analysis showed that 63.91% diet of striped hyena was contributed by wild prey items, 20.94% by domestic prey and 3.31% by birds, whereas vegetable and insects contributed 9.92% and 1.93%, respectively. Diet diversity of the striped hyena computed by the Shannon-Weiner Index(H) was found to be 2.64. The presence of domestic mammals in the scat remains implied that the striped hyena might frequently visit human habitation in search for food and hence, a potential conflict between human and wildlife might arise. Reducing the dependence of hyena on domestic livestock is a challenge to ensure the survival of striped hyena outside the protected area.     

Refined pipe theory for mechanistic modeling of wood development

We present a mechanistic model of wood tissue development in response to changes in competition, management and climate. The model is based on a refinement of the pipe theory, where the constant ratio between sapwood and leaf area (pipe theory) is replaced by a ratio between pipe conductivity and leaf area. Simulated pipe conductivity changes with age, stand density and climate in response to changes in allocation or pipe radius, or both. The central equation of the model, which calculates the ratio of carbon (C) allocated to leaves and pipes, can be parameterized to describe the contrasting stem conductivity behavior of different tree species: from constant stem conductivity (functional homeostasis hypothesis) to height-related reduction in stem conductivity with age (hydraulic limitation hypothesis). The model simulates the daily growth of pipes (vessels or tracheids), fibers and parenchyma as well as vessel size and simulates the wood density profile and the earlywood to latewood ratio from these data. Initial runs indicate the model yields realistic seasonal changes in pipe radius (decreasing pipe radius from spring to autumn) and wood density, as well as realistic differences associated with the competitive status of trees (denser wood in suppressed trees).     

ACC deaminase-producing bacteria mediated drought and salt tolerance in Capsicum annuum

Influence of drought and salt stress on different morphological and physiological growth parameters in Capsicum annuum inoculated with our isolates was estimated during the present study. Bulkhorderia cepacia was reported to possess the maximal, whereas Citrobacter feurendii the least plant growth promoting efficacy under salt and drought stress. ACC Deaminase activity of purified B. cepacia, C. feurendii and Serratia marcescens was 12.8 ± 0.44, 12.3 ± 0.56 and 11.7 ± 0.53 μM αKB mg^?1 min^?1 respectively. Under drought stress, B. cepacia showed maximum tolerance as it produced 4.893 ± 0.06 mg/mg protein of exopolysaccharide followed by C. feurendii and S. marcescens that produced 4.23 ± 0.03 and 3.46 ± 0.05 mg/mg protein, respectively. Chlorophyll “a” concentration was recorded 5.7 gm L^?1 in B. cepacia inoculated plant (without stress) and was sustained till 2.9 gm L^?1 even under the highest tested drought period. Chlorophyll “a” concentration in the B. cepacia inoculated plant under the highest tested NaCl concentration was 3.2 gm L^?1. Thus, bacterial inoculation mitigates the effects of salinity by the proliferation of root system, increasing plant biomass proving to be potential bioinoculum for alleviating abiotic stress.     

基于甘蔗热带种(LA-purple)全基因组序列的SSR开发及特征分析

现代甘蔗栽培品种(2n = 100~130)是由甘蔗热带种(2n = 80)与割手密(2n = 40~128)种间杂交而来, 形成异源多倍体、非整倍体作物, 使得甘蔗栽培品种中80%~90%的染色体来源于热带种。开发热带种基因组SSR分子标记, 有助于甘蔗遗传多样性分析、分子标记辅助选择、遗传图谱的构建等。本研究基于热带种LA-purple的全基因组测序数据的255 398个预测基因序列(累计总长为1 029 222 285 bp), 利用Perl程序与生物信息学软件结合, 发掘SSR位点, 获得了153 150个SSR位点, 平均每1.67个基因有1个SSR位点, 其中二、三核苷酸重复基序分别为39 556个和50 072个, 占总SSR位点数的58.5%。在二核苷酸重复基序中, TA/AT所占比例最高, 占41.4%, CG/GC所占比例最低, 占4.6%; 在三核苷酸碱基重复基序中, TGT/ACA所占比例最高, 为15.6%。在TA/AT重复类型中选取100个基序重复次数在60~90之间的SSR位点, 进行引物设计与合成, 在12个甘蔗属材料中进行PCR扩增分析, 从中筛选出52对具有多态性SSR引物, 其中有27对引物在研究的2个甘蔗栽培品种间表现为多态。这些基因组SSR标记的开发, 不仅可以用于甘蔗栽培品种DNA指纹图谱分析, 而且为甘蔗属不同种的遗传图谱构建、遗传多样性分析和重要性状的遗传机制解析奠定基础, 为甘蔗分子育种研究提供重要支撑。     

Soil macrofaunal response to sand dune conversion from mobile dunes to fixed dunes in Horqin sandy land,northern China

The response of macrofauna to dune conversion from mobile dunes to fixed dunes was investigated in Horqin sandy land, northern China. Macrofaunal communities were compared in four major stages: mobile dunes (MD), semi-mobile dunes (SMD), semi-fixed dunes (SFD) and fixed dunes (FD). Macrofauna were collected by hand in the field and identified in the lab on the basis of features observed under a magnifying glass. They were then classified into morphotypes at the order and family level. Environmental parameters indicated a significant alteration of the soil environment in the conversion process. A clear increasing trend in abundance, richness, and diversity of the macrofaunal community could be established from mobile dunes to fixed dunes. Data for the different taxa suggested specific responses to dune conversion. Specific groups in the initial stage were predators (Labiduridae and Myrmeleontidae larvae, presumably feeding on Noctuidae and other small flying insects), which in the intermediate stages were replaced by saprophagous taxa (Diptera larvae, feeding on many decaying roots buried in semi-mobile and semi-fixed dunes), and burrowing Tenebrionidae (adults, then larvae) with herbivorous Hemiptera in later fixation stages with higher plant density and cover. Overall, the conversion process, particularly the fixed dunes, provided more suitable habitats with greater soil organic matter and plant cover supporting macrofaunal communities with higher diversity, which further enhanced the stabilization process, benefiting the restoration of soil and vegetation in this semiarid sandy area.