A comparison of the population genetics of Lethrinus miniatus and Lutjanus sebae from the east and west coasts of Australia: Evidence for panmixia and isolation

Lethrinus miniatus and Lutjanus sebae are important commercial and recreational species of reef fish. Within Australian waters the former species is less widespread than the latter and has a discontinuous distribution, whilst the latter is continuously distributed in tropical Australian waters. The demographic attributes of these species (e.g. long life span, low rates of natural mortality) make them vulnerable to over-exploitation. Consequently, conservative harvest strategies including no-take zones for these species have been adopted by fisheries management agencies to control exploitation. Information on the genetic stock structure of these species is important for developing specific management strategies. However, little is known about genetic stock structures within and between east and west Australian populations of these species. The current study used the mitochondrial genome hypervariable region 1 (HVR1) of the control region to examine variation between two sites from both the east and west Australian coasts for each species. HVR1 for L. sebae did not differ genetically either within or between coasts (F_st < 0.018, p > 0.15) at the sites studied, suggesting a panmictic population structure. Similarly, L. miniatus did not differ significantly between sites sampled within coast. However, the west coast HVR1 for L. miniatus east and west coast populations, were discrete (F_st of at least 0.92, p < 0.0001). The degree of genetic sub-division between east and west coast populations indicates that they should be managed as discrete stocks. Further, when considering both species, the lower genetic (both haplotype and nucleotide) diversity in three of the four sites on the west coast of Australia, indicates that this region is genetically impoverished and neutrality tests suggest that selection is responsible. Consequently, west Australian populations will be less resilient to perturbations (e.g. fishing, climate change) than east Australian populations, which have higher genetic diversity.     

Heritability estimates and response to selection for growth of Nile tilapia (Oreochromis niloticus) in low-input earthen ponds

This study presents results of two generations of selection (G₁ and G₂) for growth of Nile tilapia. The selection environment consisted of earthen ponds which were fertilized daily with 50 kg dry matter (dm)/ha chicken manure. No supplementary feeds were provided. In total, 6429 fully pedigreed experimental fish were included in the analysis. Survival till harvest was highly variable ranging from 35% to 77% and was affected by initial weight, pond, and age effects. Body weight at harvest (BW) increased from a mean of 67.4 g in the grandparental (unselected) population (G₀) to 129.5 g in G₂ was affected by initial weight, pond, sex and age effects. Generations were discrete and therefore genetic parameters were estimated separately for each year. Heritability estimates for BW ranged from 0.38 to 0.60, and the heritability for survival ranged from 0.03 to 0.14. The estimated selection response was 23.4 g (34.7%) between G₀ and G₁ and 13.0 g (14.9%) between G₁ and G₂. These results demonstrate the feasibility of selection for growth of Nile tilapia in low-input environments.     

Implementation of two high through-put techniques in a novel application: detecting point mutations in large EMS mutated plant populations

Background  

The establishment of mutant populations together with the strategies for targeted mutation detection has been applied successfully to a large number of organisms including many species in the plant kingdom. Considerable efforts have been invested into research on tomato as a model for berry-fruit plants. With the progress of the tomato sequencing project, reverse genetics becomes an obvious and achievable goal.     

A European irrigation map for spatially distributed agricultural modelling

We present a pan-European irrigation map based on regional European statistics, a European land use map and a global irrigation map. The map provides spatial information on the distribution of irrigated areas per crop type which allows determining irrigated areas at the level of spatial modelling units. The map is a requirement for a European scale assessment of the impacts of irrigated agriculture on water resources based on spatially distributed modelling of crop growth and water balance. The irrigation map was compiled in a two step procedure. First, irrigated areas were distributed to potentially irrigated crops at a regional level (European statistical regions NUTS3), combining Farm Structure Survey (FSS) data on irrigated area, crop-specific irrigated area for crops whenever available, and total crop area. Second, crop-specific irrigated area was distributed within each statistical region based on the crop distribution given in our land use map. A global map of irrigated areas with a 5′ resolution was used to further constrain the distribution within each NUTS3 based on the density of irrigated areas. The constrained distribution of irrigated areas as taken from statistics to a high resolution dataset enables us to estimate irrigated areas for various spatial entities, including administrative, natural and artificial units, providing a reasonable input scenario for large-scale distributed modelling applications. The dataset bridges a gap between global datasets and detailed regional data on the distribution of irrigated areas and provides information for various assessments and modelling applications.     

Analysis of return flows in a tank cascade system in Sri Lanka

In Sri Lanka, irrigation reservoirs (tanks) are usually connected sequentially and form cascades along the landscape. A study was carried out in the Anuradhapura District in the dry zone of Sri Lanka to understand the role of return flows in such tank cascade systems. The water balance of a tank cascade system was estimated using hydrological data collected over a one-year period. The system was extended about 25 km along a river composed of three small reservoirs having the command area of 31, 55, and 55 ha, respectively. In this system, about 46% of seepage water from tanks entered the paddy fields of the command area. The crop consumed part of the water and the rest returned to the downstream tank through the drainage canals. Percolation loss in the command areas was low (3.6 mm/day) since a considerable portion of the percolation returned to the downstream tank. These results showed that return flows, which are generally disregarded in the water budget, contributed considerably to the water supply of the tank cascade system.     

Grain number and grain weight in wheat lines contrasting for stem water soluble carbohydrate concentration

In wheat, the ability to store and remobilise large amounts of stem water soluble carbohydrates (WSC) to grain constitutes a desirable trait to incorporate into germplasm targeted to regions with frequent terminal drought. The main aim of this paper was to examine the relationships between WSC storage, grain number and grain weight across several environments. A small set of recombinant inbred lines (2–4) contrasting in stem WSC were grown in six field trials where water availability, sowing date and/or N level were manipulated, with line yields ranging from 400 to 850 g m⁻² across experiments. Biomass, N and WSC concentration (WSCc, mg g⁻¹ dry weight) and amount (WSCa, g m⁻²) were monitored. A resource-oriented area-based model [Fischer, R.A., 1984. Growth and yield of wheat. In: Smith, W.H., Bante, S.J. (Eds.), Potential Productivity of Field Crops Under Different Environments. International Rice Research Institute, Los Baños, pp. 129–154] and intrinsic rates of organ growth were used to investigate the consequences on grain number of potential competition between spike and stem around flowering.     

Fine-earth translocation by tillage in stony soils in the Guadalentin, south-east Spain: an investigation using caesium-134

Tillage erosion is increasingly recognised as an important soil erosion process on agricultural land. In view of its potential significance, there is a clear need to broaden the experimental database for the magnitude of tillage erosion to include a range of tillage implements and agricultural environments. The study discussed in this paper sought to address the need for such data by examining tillage erosion by a duckfoot chisel plough in stony soils on steep slopes in a semi-arid environment. Results of the investigation of coarse fraction (rock fragment) translocation by tillage in this environment have been presented elsewhere and the paper focuses on tillage translocation and erosion of the fine earth. Tillage translocation was measured at 10 sites, representing both upslope and downslope tillage by a duckfoot chisel plough on five different slopes, with tangents ranging from 0.02 to 0.41. A fine-earth tracer, comprising fine earth labelled with ¹³⁴Cs, was introduced into the plough layer before tillage. After a single pass of the plough, incremental samples of plough soil were excavated and sieved to separate the fine earth from the rock fragments. Translocation of the fine-earth tracer was established by analysing the ¹³⁴Cs content of the samples of fine earth. These data were used to establish translocation distances for each combination of slope and tillage direction. Translocation distances of the fine earth were not significantly different from translocation distances of the coarse fraction. For all sites, except uphill on the 0.41 slope, translocation distances were found to be linearly related to slope tangent. The soil flux due to tillage for each site was calculated using the translocation distance and the mass per unit area of the plough layer. For slopes with tangents <0.25, the relationship between soil flux and tangent was linear and the soil flux coefficient derived was 520–660 kg m⁻¹ per pass. This is much larger than the coefficients found in other studies and this high magnitude is attributed to the non-cohesive nature and high rock fragment content of the soil in this investigation. A second contrast with previous studies was found in non-linearity in the relationship between soil flux and tangent when steeper slopes were included. This was a product of variation in plough depth between the steepest slopes and the remainder of the study area. On the basis of the study it is suggested that an improved understanding of tillage erosion may be obtained by considering the dual processes of tillage detachment (mass per unit area of soil subject to tillage) and tillage displacement (equivalent to translocation distance per pass) in assessing, comparing and modelling tillage translocation. An improved model is proposed that recognises the complexity of soil redistribution by tillage, provides a framework for process-based investigation of the controls on tillage fluxes, and allows identification of potential self-limiting conditions for tillage erosion.     

Aggregation studied by laser diffraction in relation to plowing and liming in the Cerrado region in Brazil

In the Cerrado savanna region in Brazil, the effects of different land use on Oxisol aggregation were studied using laser diffraction grain size analyses. The topsoil of plowed systems had significantly lower amount of macroaggregates (2000–194 μm) and a significantly higher amount of soil in the microaggregate size and primary particle fraction (<76 μm) compared to pastures and the native Cerrado. In plowed systems low in soil organic carbon (SOC), lime had a negative effect on aggregate stability. Lime addition had no effect on topsoil aggregation in land use systems that were not plowed regularly and generally had a higher SOC content. For all the studied topsoils, pH_KCl was positively correlated with the amount of clay dispersed after 3 h of shaking in water. SOC did not influence clay dispersion in the range of soils studied. In continuous cropping systems in the Cerrado region, with a combination of mechanical stress and low SOC, liming will cause an increase in small aggregates and primary particles and hence contribute to a destabilization of the soil structure.     

Flavonoid constituents of Chorizanthe diffusa with potential cancer chemopreventive activity

An ethyl acetate-soluble extract of Chorizanthe diffusa was found to exhibit significant antioxidant activity, as judged by scavenging stable 1,1-diphenyl-2-picrylhydrazyl (DPPH) free radicals and inhibition of 12-O-tetradecanoylphorbol 13-acetate (TPA)-induced free radical formation with cultured HL-60 cells. Bioassay-directed fractionation of this extract using the DPPH antioxidant assay as a monitor led to the isolation of five structurally related flavonoids (1-5), including the novel compound 5,8,3',4',5'-pentahydroxy-3, 7-dimethoxyflavone (1). Isolates 1-5 demonstrated varying degrees of antioxidant or antimutagenic activity. Two of the compounds, 5,7,3', 4'-tetrahydroxy-3-methoxyflavone (2) and quercetin (4), were subsequently found to inhibit carcinogen-induced preneoplastic lesions in a mouse mammary organ culture model. Inhibitory activity of this type is known to correlate with cancer chemopreventive effects in full-term models of tumorigenesis.     

Comparison of the bioavailability of natural palm oil carotenoids and synthetic beta-carotene in humans

Palm oil carotenoids are a mixture of alpha- and beta-carotenes, which are used as food colorants. They may also be applied as a functional food ingredient because of the provitamin A activity of alpha- and beta-carotenes and their proposed beneficial roles in the prevention of chronic diseases. This paper discusses the results of an incomplete balanced crossover study with 69 healthy adult volunteers to compare palm oil carotenoids with synthetic beta-carotene in their efficacies to increase plasma levels of carotenoids. Four days of supplementation with natural palm oil carotenoids (7.6 mg/day of alpha-carotene, 11.9 mg/day of all-trans-beta-carotene, 7.5 mg/day of cis-beta-carotene) or synthetic beta-carotene (23.8 mg/day of all-trans-beta-carotene, 4.4 mg/day of cis-beta-carotene), added to a mixed meal, resulted in significant increases in plasma levels of the supplied carotenoids as compared to consumption of a low-carotenoid meal (i.e., 7.2-fold increase in alpha-carotene and 3.5-fold increase in all-trans-beta-carotene following palm oil carotenoids; 6.9-fold increase in all-trans beta-carotene following synthetic beta-carotene). As the carotenoid content differed between the treatments, the relative plasma responses were calculated per milligram of beta-carotene intake. These were similar for the two supplements, suggesting that the presence of alpha-carotene does not affect the bioavailability of beta-carotene from palm oil. It was concluded that 4 days of supplementation with palm oil carotenoids or synthetic beta-carotene improves the plasma beta-carotene status substantially, whereas alpha-carotene is additionally delivered by the palm oil supplement.