Water allocation and management in an emerging spate irrigation system in Makanya catchment, Tanzania

Although spate irrigation systems are risk-prone, they can be an important component for livelihood security in semi-arid areas. Spate uses water (flood water), which upstream users often do not require, as rainfall during these periods is more than sufficient. The use of this flood water for spate irrigation is therefore a good opportunity to convert water with a low opportunity cost to high value water. As more rivers are closing, due to socio-economic and climate changes, spate irrigation may become increasingly relevant in semi-arid areas. Spate irrigation systems pose institutional and technical challenges: collective action is challenged by complex upstream-downstream interactions between users within the system, and the high labour demands for regular reconstruction of temporary diversion weirs and intake structures. This paper describes a spate irrigation system in Makanya village, Tanzania that emerged in response to increased upstream water use. We use three of the four dimensions (hydrological, hydraulic and sociological) of spate irrigation proposed by Van Steenbergen (1997) to assess the Makanya spate irrigation system. The Makanya spate irrigation system has an organisational structure that is similar to the canal irrigation (furrow) committees located upstream, and effectively deals with the institutional demands of managing water in spate irrigation systems. Water allocation is reminiscent to the water sharing arrangements existing in the full irrigation system, which previously was in place at the site and in the high- and midlands of the Makanya catchment and therefore set this system apart from the traditional spate irrigation practice elsewhere. Technically, a major challenge is the reconstruction of the head works after each flood. Another aspect is the changes in the river bed. Flash floods carry sediments that deposit on the fields, raising the elevation of the irrigated land every year and making it increasingly difficult for the river water to enter the plots. Improving system efficiency through modernisation of the diversion and distribution structures in this case is not feasible due to the huge amounts of sediments delivered to the system each year. Instead investments in conjunctive use of groundwater could be the solution because it involves a relatively small intervention, minimises the physical disturbance of the system, and therefore is likely to respect the existing locally developed water management arrangements.     

Using traffic flow theory to model traffic mortality in mammals

Traffic has a considerable effect on population and community dynamics through the disruption and fragmentation of habitat and traffic mortality. This paper deals with a systematic way to acquire knowledge about the probabilities of successful road crossing by mammals and what characteristics affect this traversability. We derive a model from traffic flow theory to estimate traffic mortality in mammals related to relevant road, traffic and species characteristics. The probability of successful road crossing is determined by the pavement width of the road, traffic volume, traversing speed of the mammals and their body length. We include the traversability model in a simple two-patch population model to explore the effects of these road, traffic and species characteristics on population dynamics. Analysis of the models show that, for our parameter ranges, traffic volume and traversing speed have the largest effect on traffic mortality. The population size is especially negatively affected when roads have to be crossed during the daily movements. These predictions could be useful to determine the expected effectiveness of mitigating measures relative to the current situation. Mitigating measures might alter the road and traffic characteristics. The effects of these changes on traffic mortality and population dynamics could be analysed by calculating the number of traffic victims before and after the mitigating measures. This revised version was published online in July 2006 with corrections to the Cover Date.     

Conformational states of sunflower (Helianthus annuus) Helianthinin: effect of heat and pH

The structure and solubility of helianthinin, the most abundant protein of sunflower seeds, was investigated as a function of pH and temperature. Dissociation of the 11S form (hexamer) into the 7S form (trimer) gradually increased with increasing pH from 5.8 to 9.0. High ionic strength (I = 250 mM) stabilizes the 11S form at pH > 7.0. Heating and low pH resulted in dissociation into the monomeric constituents (2-3S). Next, the 7S and 11S forms of helianthinin were isolated and shown to differ in their secondary and tertiary structure, and to have denaturation temperatures (T(d)) of 65 and 90 degrees C, respectively. Furthermore, the existence of two populations of the monomeric form of helianthinin with denaturation temperatures of 65 and 90 degrees C was described. This leads to the hypothesis that helianthinin can adopt two different conformational states: one with T(d) = 65 degrees C and a second with T(d) = 90 degrees C.     

Mutational analysis of the tyrosine phosphatome in colorectal cancers

Tyrosine phosphorylation, regulated by protein tyrosine phosphatases (PTPs) and kinases (PTKs), is important in signaling pathways underlying tumorigenesis. A mutational analysis of the tyrosine phosphatase gene superfamily in human cancers identified 83 somatic mutations in six PTPs (PTPRF, PTPRG, PTPRT, PTPN3, PTPN13, PTPN14), affecting 26% of colorectal cancers and a smaller fraction of lung, breast, and gastric cancers. Fifteen mutations were nonsense, frameshift, or splice-site alterations predicted to result in truncated proteins lacking phosphatase activity. Five missense mutations in the most commonly altered PTP (PTPRT) were biochemically examined and found to reduce phosphatase activity. Expression of wild-type but not a mutant PTPRT in human cancer cells inhibited cell growth. These observations suggest that the mutated tyrosine phosphatases are tumor suppressor genes, regulating cellular pathways that may be amenable to therapeutic intervention.     

Comparison of an in vitro and a damping-off assay to test soils for suppressiveness to Pythium aphanidermatum

Testing of soil samples in greenhouse assays for suppressiveness to soilborne plant pathogens requires a considerable investment in time and effort as well as large numbers of soil samples. To make it possible to process large numbers of samples efficiently, we compared an in vitro growth assay with a damping-off assay using Pythium aphanidermatum as the test organism on tomato seedlings. The in vitro test compares the radial growth or relative growth of the fungus in soil to that in autoclaved soil and reflects suppressiveness of soils to the pathogen. We used soils from a field experiment that had been farmed either organically or conventionally and into which a cover crop (oats and vetch in mixture) had been incorporated 0, 10, 21, and 35 days previously. We obtained a significant, positive correlation between damping-off severities of tomato seedlings in damping-off assays and both relative and radial growth in vitro. In addition, radial and relative growth of P. aphanidermatum in the in vitro assay were positively correlated with several carbon and nitrogen variables measured for soil and incorporated debris. We did not find differences between the two farming systems for either growth measures of P. aphanidermatum or disease severities on tomato at different stages of cover crop decomposition. The in vitro assay shows potential for use with any fungus that exhibits rapid saprophytic growth, and is most suitable for routine application in suppressiveness testing.     

Functional properties of soils formed from biochemical ripening of dredged sediments—subsidence mitigation in delta areas

Journal of Soils and Sediments - In delta areas, dense networks of canals have been developed through time and have to be periodically dredged. Lowering the groundwater level in delta areas deepens...     

Trend analysis of Trichinella in a red fox population from a low endemic area using a validated artificial digestion and sequential sieving technique

Freezing of fox carcasses to minimize professional hazard of infection with Echinococcus multilocularis is recommended in endemic areas, but this could influence the detection of Trichinella larvae in the same host species. A method based on artificial digestion of frozen fox muscle, combined with larva isolation by a sequential sieving method (SSM), was validated using naturally infected foxes from Latvia. The validated SSM was used to detect dead Trichinella muscle larvae (ML) in frozen muscle samples of 369 red foxes from the Netherlands, of which one fox was positive (0.067 larvae per gram). This result was compared with historical Trichinella findings in Dutch red foxes. Molecular analysis using 5S PCR showed that both T. britovi and T. nativa were present in the Latvian foxes, without mixed infections. Of 96 non-frozen T. britovi ML, 94% was successfully sequenced, whereas this was the case for only 8.3% of 72 frozen T. britovi ML. The single Trichinella sp. larva that was recovered from the positive Dutch fox did not yield PCR product, probably due to severe freeze-damage. In conclusion, the SSM presented in this study is a fast and effective method to detect dead Trichinella larvae in frozen meat. We showed that the Trichinella prevalence in Dutch red fox was 0.27% (95% CI 0.065-1.5%), in contrast to 3.9% in the same study area fifteen years ago. Moreover, this study demonstrated that the efficacy of 5S PCR for identification of Trichinella britovi single larvae from frozen meat is not more than 8.3%.     

The Effect of a Chronic Stressor, Lameness, on Detailed Sexual Behaviour and Hormonal Profiles in Milk and Plasma of Dairy Cattle

The objectives of the present study were to quantify the effects of a biological chronic stressor (lameness) on the duration and frequency of different oestrous behaviours in parallel with milk hormone profiles. Dairy cows 51.8 ± 1.4 days postpartum (n = 59), including 18 non‐lame control cows, were scored for lameness and closely observed for signs of oestrus having had their follicular phases synchronized by administration of gonadotrophin‐releasing‐hormone (GnRH) followed by prostaglandin F_2α (PG) 7 days later. Lameness shortened the period when herd‐mates attempted to mount the lame cows (1.83 ± 0.69 h vs 5.20 ± 1.53 h; p = 0.042) but did not affect the overall duration of total behaviours (lame 12.3 ± 1.3 h vs non‐lame 15.2 ± 1.3 h). Lameness also lowered the intensity of oestrus [1417 ± 206 points (n = 18) vs 2260 ± 307 points (n = 15); p = 0.029]. Throughout the synchronized oestrous period, lame cows mounted the rear of herd‐mates less frequently (p = 0.020) and tended to chin rest less (p = 0.075). Around the period of maximum oestrous intensity, lameness also diminished the proportion of cows mounting the rear of another cow and chin resting (p = 0.048, p = 0.037, respectively). Furthermore, lame cows had lower progesterone values during the 6 days before oestrous (p ≤ 0.05). Fewer lame cows were observed in oestrus following PG (non‐lame 83%, lame 53%; p = 0.030); however, if prior progesterone concentrations were elevated, lame cows were just as likely to be observed in oestrus. In conclusion, following endogenous progesterone exposure, lameness shortens the period when herd‐mates attempt to mount lame cows but does not affect the incidence of oestrous. However, lame cows are mounted less frequently and express oestrus of lower intensity. This is associated with lower progesterone prior to oestrus but not with abnormal oestradiol or cortisol profiles in daily milk samples.     

Idiopathic muscular hypertrophy of the oesophagus in the horse: a retrospective study of 31 cases

REASONS FOR PERFORMING STUDY: To present the first report of a case series concerning equine idiopathic muscular hypertrophy of the oesophagus (IMHO). OBJECTIVES: To investigate the clinical and pathological features of the disorder. METHODS: The medical records of 31 horses suffering from the disorder were reviewed retrospectively. In all these animals the diagnosis was confirmed at post mortem examination. RESULTS: The median age of the affected horses was 12.5 +/- 5.6 years (range 1-26) without sex or breed predilection. Only 2 out of 31 horses showed clinical signs associated with oesophageal dysfunction, indicating that the muscular hypertrophy was rather a coincidental post mortem finding. Histology revealed thickening of the distal portion of the oesophagus mainly involving the circular layer of the tunica muscularis without fibrosis or inflammation. In 8 cases, the disorder was seen in concurrence with idiopathic hypertrophy of the tunica muscularis of various other parts of the gastrointestinal tract. CONCLUSIONS: In the majority of patients, IMHO was a coincidental finding at post mortem examination usually confined to the smooth, circular muscle layer of the tunica muscularis externa. POTENTIAL RELEVANCE: Further research is necessary to study the precise effect of IMHO on oesophageal function.