Evaluation of red and red-edge reflectance-based vegetation indices for rice biomass and grain yield prediction models in paddy fields

Remote sensing-based nitrogen (N) management has been evaluated in many crops. The water background and wide range of varieties in rice (Oryza sativa), are unique features that require additional consideration when using sensor technology. The commonly calculated normalized difference vegetation index is of limited use when the crop has reached complete canopy closure. The objective of this research was to evaluate mid-season agronomic parameter and grain yield prediction models along with the effect of water background and of different varieties using a red- and red-edge-based vegetation index. Varieties × N trials were established at the LSU AgCenter Rice Research Station located in Crowley, Louisiana in 2011 and 2012. Canopy spectral reflectance under clear and turbid water, biomass yield, N content, plant coverage, and water depth were collected each week for three consecutive weeks beginning 2 weeks before panicle differentiation. Grain yield was also determined. Water turbidity had an influence on spectral reflectance when canopy coverage was less than 50 %. While water depth influenced red reflectance, this was not carried over when reflectance was transformed to vegetation indices. The red-edge-based vegetation indices, especially those computed by ratio, had stronger relationships with measured agronomic parameters as compared with red-based indices. Furthermore, the effect of variety on the yield prediction model was observed using derivative-based red-edge indices but not with other ratio-based indices. Future researches should focus on developing a generalized yield prediction model using ratio-based red-edge indices across different varieties to extend its applicability in production fields.     

Gene expression profiles of yeast Saccharomyces cerevisiae sod1 caused by patulin toxicity and evaluation of recovery potential of ascorbic acid

Patulin (PAT) is a fungal secondary metabolite and exhibits various toxicities including DNA damage and oxidative stress. These toxicities are eased by ascorbic acid (AsA). Although a number of studies regarding the mitigating effect of AsA against PAT toxicity have been reported, a comprehensive study about gene expressions is currently underway. Here, we carried out a detailed evaluation of PAT toxicity by co-incubation with AsA using the superoxide dismutase (SOD) mutant. DNA microarray results extracted the alterations in iron transporter and Fe/S cluster assembly genes; some of the genes that constitute the cellular iron transporter systems remained dysfunctional even in the presence of AsA. Meanwhile, AsA treatment reduced the alterations of G1/S phase cell cycle regulation genes. These results suggest that oxidative stress-derived DNA damage still exists, although AsA treatment effectively reduces PAT toxicity. This implies that a combined condition is required for complete blockade of PAT toxicity.     

Evaluation of yield performance in rice near-isogenic lines with increased spikelet number

Rice yield potential is determined by the balance between sink size and source capacity. To clarify the factors that limit yield in temperate japonica cultivars, we compared the yield performance of Sasanishiki, a temperate japonica cultivar, with those of three near-isogenic lines (NILs) of Sasanishiki with introgression of quantitative trait loci (QTL) derived from a high-yielding indica cultivar, Habataki: qSBN1, which increases the number of secondary rachis branches; qPBN6, which increases the number of primary rachis branches; and a pyramid line that combines these two QTLs. NIL (SBN1), NIL (PBN6), and NIL (SBN1 + PBN6) produced 28–37%, 9–16%, and 62–65% more spikelets per panicle than Sasanishiki, respectively. However, the NILs with increased spikelet number per panicle did not increase grain yield significantly, because compensation is taken place among different yield components. The pyramid line nevertheless had 4–12% higher yield than Sasanishiki due to greater translocation of carbohydrates from stem to panicle. There was no difference in carbohydrate accumulation before heading or in biomass production among Sasanishiki and the three NILs. The results indicate that increasing sink size does not substantially improve yield in Sasanishiki, which lacks sufficient substrate supply to fully satisfy the increased sink demand that results from the spikelet-number QTLs.     

Origin identification method by multiple trace elemental analysis of short-neck clams produced in Japan, China, and the Republic of Korea

The correlations among the contents of trace elements in the shells of short-neck clams collected from Japan, China, and the Republic of Korea were examined. Origin-specific elemental content patterns were seen in clams originating from Japan, China, and the Republic of Korea. The crushed shells were decomposed with nitric acid–hydrogen peroxide, and the concentrations of ten elements (Li, V, Mn, Co, As, Rb, Mo, Ba, Pb, and U) in the shells were measured by inductively coupled plasma mass spectrometry. Some of the metal concentrations in the samples displayed clear geographical trends. The average concentration of Pb in Japanese clam shells was one-half to one-quarter that seen in Chinese or Korean clams. Average concentrations of As, Rb, and Ba in shells of Japanese origin were one-half those observed in Chinese or Korean clams. Linear discriminant analysis was applied to these analytical data, and four discriminant models were constructed. These discriminant models were able to distinguish the geographic origins of short-neck clams with 80.0–100 % accuracy. In particular, clams of Japanese origin were classified correctly ≥90 % of the time. Therefore, the trace elemental analysis of a short-neck clam shell is useful for identifying the country of origin of the clam.     

Growth and yield of corn grown on two alluvial soils of Louisiana applied with different phosphorus rates

The influence of soil properties on phosphorus (P) availability of Louisiana alluvial soils is not fully understood. A pot experiment was conducted in 2011 to evaluate the effect of different P fertilizer rate (0, 34, 67, 101 and 134 kg P₂O₅ ha^?1) on corn growth and development on Perry clay and Commerce silt loam (sil) soils and relate Mehlich-3 and Bray-2 soil test P values with yield, total biomass, and P uptake of corn. The Bray-2 P values were six times higher than Mehlich-3 P values for Commerce sil while they were similar for Perry clay. Bray-2 and Mehlich-3 extractable-P of both soils increased with increasing P rate but only corn grown on Perry clay responded to P rate (P < 0.05). Implementation of appropriate testing procedure for estimating plant-available P in soil is an important component of effective P fertilization guidelines for corn.     

Detection of Nesopora caninum-Specific DNA from Cerebrospinal Fluid by Polymerase Chain Reaction in a Dog with Confirmed Neosporosis

A one-month male Greyhound dog presented with a swinging gait of the hindlimbs, and later developed muscular atrophy of the femoral region and hyperextension of hindlimbs. The dog had positive serum IFAT titers to Neospora caninum, but a negative titer in the cerebrospinal fluid (CSF). N. caninum-specific DNA was amplified from the CSF using a semi-nested polymerase chain reaction assay. Clusters of protozoa in biopsied muscle fibers were subsequently confirmed as N. caninum tachyzoites by immunohistochemical examination. Early recognition and treatment are necessary for effective recovery of clinical canine neosporosis, but antemortem diagnosis is difficult. We suggest that the detection of parasite deoxyribonucleic acid in the CSF is a useful antemortem diagnostic method in facilitating treatment of this disease.     

The occurrence of Listeria monocytogenes in imported ready-to-eat foods in Japan

Quantitative analyses of Listeria monocytogenes in imported ready-to-eat (RTE) foods sold at retail stores in Japan were performed. Of the 77 non-cooked meat products, 6 samples (7.8%) tested positive. The levels of contamination of 4 of the samples were below 100 colony-forming units (CFU)/g, which is the microbiological criterion for L. monocytogenes in RTE foods as determined by Codex. However, Listeria cells at levels of 100 and 400 CFU/g were detected in a salami sample and a raw ham sample, respectively. All of the 70 cheese samples and the 3 samples made from raw ham and cheese showed negative test results. These results suggest that imported RTE foods are potential sources of the causative agent of listeriosis.     

Phylogenetic relationships of three species within the family Heligmonellidae (Nematoda; Heligmosomoidea) from Japanese rodents and a lagomorph based on the sequences of ribosomal DNA internal transcribed spacers, ITS-1 and ITS-2

Nematodes of the family Heligmonellidae (Heligmosomoidea; Trichostrongylina) reside in the digestive tracts of rodents and lagomorphs. Although this family contains large numbers of genera and species, genetic information on the Heligmonellidae is very limited. We collected and isolated adult worms of three species in Japan that belong to the family Heligmonellidae, namely Heligmonoides speciosus (Konno, 1963) Durette-Desset, 1970 (Hs) from Apodemus argenteus, Orientostrongylus ezoensis Tada, 1975 (Oe) from Rattus norvegicus and Lagostrongylus leporis (Schulz, 1931) (Ll) from Pentalagus furnessi, and sequenced the entire internal transcribed spacer regions, ITS-1 and ITS-2 of ribosomal DNA. ITS-1 of Hs, Oe and Ll was 426, 468 and 449 bp in length, and had a G+C content of about 41, 41 and 37 %, respectively. ITS-2 of Hs, Oe and Ll was 297, 319 and 276 bp in length and had a G+C content of about 38, 40 and 28%, respectively. The data of Hs, Oe and Ll were compared with those of two other known species within the family Heligmonellidae, Calorinensis minutus (Dujardin, 1845) (Cm) and Nippostrogylus brasiliensis (Travassos, 1914) (Nb), and with those of two species of Heligmosomidae (Heligmosomoidea), Heligmosomoides polygyrus bakeri and Ohbayashinema erbaevae. Phylogenetic analysis placed Hs, Oe and Ll in the same clade with Cm and Nb, forming a Heligmonellidae branch in both ITS-1 and ITS-2, separate from the Heligmosomoidea branch. These results demonstrated that the ITS-1 and ITS-2 sequences are useful for differentiating the Heligmonellidae nematode species. This study is the first to describe the ITS-1 and ITS-2 sequences of Hs, Oe and Ll.     

Persorption of bovine lactoferrin from the intestinal lumen into the systemic circulation via the portal vein and the mesenteric lymphatics in growing pigs

The absorption and the transportation of intestinally administrated bovine lactoferrin (LF) were immunohistochemically and physiochemically investigated in the small intestine of growing pigs. At the apical halves of the small intestinal villi, bovine LF was absorbed by transcytosis as small vesicles through villous columnar epithelial cells. The presence of bovine LF-positive membranes of transcytotic vesicles suggests that the absorption was mediated by LF-binding factors on the epithelial cell membranes. Almost all of the absorbed bovine LF was demonstrated to be transported via the lymphatics and the portal vein into the systemic circulation. The LF-concentration in systemic circulation was significantly higher at 1 hr following intestinal administration of bovine LF. Bovine LF-positive lymphocytes also were transferred into the systemic circulation from intestine via the lymphatics and the portal vein.