Response of benthic soluble reactive phosphorus transfer rates to step changes in flow velocity

Purpose

The purpose of this study was to investigate the responses of the benthic soluble reactive phosphorus (SRP) transfer rate to step changes in the flow velocity of the overlying water using laboratory experiments and a non-steady-state numerical model.

Materials and methods

Laboratory experiments were conducted using a rectangular recirculating flume. After pre-incubation of sediments in a cavity of the experimental flume for 2?days, the step responses of the SRP transfer rate to sudden increases in the flow velocity were examined under anaerobic conditions. The benthic SRP transfer rates were obtained from the rate of increase in the SRP concentration of the overlying water. We also analysed the response using a newly constructed numerical model that consists of a one-dimensional diffusion model of the diffusive boundary layer (DBL) and a biochemical model of the sediment, in which oxygen, SRP, ferrous iron and nitrate were model variables. The non-steady-state calculation was performed to reproduce the experiments after the step change in the flow velocity.

Results and discussion

The experiments revealed a rapid increase in the SRP concentration in the overlying water that continued for approximately 5?min after the step change in flow velocity and was followed by a lower, steady increase in the SRP concentration. The model analyses also demonstrated that a step increase in flow velocity leads to a drastic enhancement of the SRP transfer rate within a few minutes. The abrupt increase in the transfer rate was due to the rapid transport of SRP that had accumulated in the DBL and to enhanced diffusion caused by a temporal increase in the SRP concentration gradient in the DBL. The modelled results for the SRP transfer rate were in agreement with the experimental results.

Conclusions

The temporal increase in SRP transfer was due to rapid SRP transport caused by intensified diffusion following a decrease in DBL thickness. The model-based results for the response of the SRP transfer rate were in agreement with the experimental results. Therefore, our model can simulate the response of the SRP concentration profile near the sediment?Cwater interface to temporal variations in flow velocity.     

Mechanism of inhibitory effect of allophane and montmorillonite on some enzymes

It is well established that the presence of clay in an enzyme-substrate system may reduce the activity of enzymes (1-3,5,6,8,11-14). This inhibition by the clay would be principally caused by the adsorption of enzyme and/or substrate on the clay particle. In the previous papers (1–3), the activity of some enzymes was found to be inhibited in various degrees by clays. The enzyme appears to be adsorbed on the clay particle in various ways according to the nature of adsorbate as well as adsorbent. This suggests that the enzyme is adsorbed by the clay so as not to combine with the substrate, or that the adsorbed enzyme molecule has a configuration different from that of a free enzyme molecule, reducing the activity of the enzyme.     

Soil NO3-N production and immobilization affected by NH4-N,glycine, and NO3-N addition in different forest types in Shikoku,southern Japan

The characteristics of production and immobilization of NO₃-N were evaluated for soils from four forest types in Kochi Prefecture, southern Japan. Net NO₃-N production during the laboratory incubation differed among the soils from the four forest types, being high under Japanese cedar (Cryptomeria japonica D. Don) and deciduous hardwood, and negligible under Japanese red pine (Pinus densiflora Sieb. et Zucc.) and hinoki cypress (Chamaecyparis obtusa Endlicher). Nitrification under Japanese cedar and hardwood was mainly autotrophic based on the fact that nitrification was inhibited by acetylene or nitrapyrin, and was not affected by cycloheximide. Net NO₃-N production in these soils increased by glycine addition, but did not increase appreciably by NH₄Cl addition. However, net NO₃-N production increased after the addition of CaCO₃ with NH₄Cl. These results indicate that the substrate of nitrification is NH₃ rather than NH₄ ⁺ and that the added NH₄ ⁺ is not utilized by nitrifiers at low pH values. With NO₃-N addition to soils under red pine and hinoki cypress, immobilization of NO₃-N was observed followed by rapid production of NH₄-N. These findings suggested that mobile NO₃-N can be converted to less mobile NH₄-N by the activities of soil microorganisms. This microbial process may play an important role in retaining nitrogen within forest ecosystems where the potential of N loss is high due to the high precipitation in the area.     

Extraordinary high aluminium tolerance of the acidophilic thermophilic alga,Cyanidium caldarium

A strain of an acidophilic, thermophilic alga, Cyanidium caldarium, was cultured in a medium containing various metal ions (A1, Cd, Cr, Cu, Mn, Ni, Zn). Among these metals, the alga tolerates especially high levels of AI: it can grow in a medium containing 200 mM AI, although the growth rate was reduced to 58%. The cellular Al concentration was kept at a considerably lower level as compared to the medium Al concentration. This may account for the Al tolerance of the alga. Treatment of the algal cells with carbonylcyanide m-chlorophenylhydrazone in the presence of Al increased the cellular Al concentration. It was suggested that energy-coupled Al exclusion mechanisms can operate in the alga.     

Adaptive strategy of six native herbaceous species growing over the whole region of Mt. Daisen: characteristics of N,P, K,Ca, and Mg accumulation in leaves

The number of native species growing at all altitudes on Mt. Daisen, which is the highest mountain in the Chugoku District of Japan, is seven. Since soil physical and chemical properties and climate vary due to differences of elevation and habitat, it is logical to assume that they have an adaptive strategy to cope with such changes in the environment. To understand the growth strategy in these species, in the period from July 26 to October 17, 2007, leaves of six herbaceous species (Athyrium vidalii (Fr. et Sav.) Nakai, Carex foliosissima Fr. Schm., Aruncus dioicus (Walt.) Fern., Polygonum cuspidatum Sieb. et Zucc., Artemisia princeps Pamp., and Plantago asiatica L.) were sampled at the different altitudes [Site A; 850?m, Site B; 1200?m, Site C; 1500?m above sea level (a.s.l.)] and nitrogen (N), phosphorus (P), potassium (K), calcium (Ca), and magnesium (Mg) concentrations were determined. Soil chemical properties at sampling day and air and soil temperature during sampling periods at each site were also measured. As a result, we could classify adaptive strategies to the environment for those six species into three types. Type I: mineral accumulation in leaves depends on the habitat and is affected by growing environment with the exception of soil mineral concentration (Pteridophyta, A. vidalii). Type II: mineral accumulation in leaves hardly depends on the habitat and the autonomy of mineral absorption is high, although Ca and Mg concentrations in leaves are affected by soil mineral concentrations and cumulative air temperature (Magnoliophyta, monocotyledon, C. foliosissima). Type III: mineral accumulation in leaves strongly depends on the habitat and soil N concentration, but is also affected by the growing environment, and the autonomy of mineral absorption is weak (Magnoliophyta, dicotyledon, A. dioicus, P. cuspidatum, A. princeps, and P. asiatica).     

Within- and between-site variations in leaf longevity in hinoki cypress (Chamaecyparis obtusa) plantations in southwestern Japan

We investigated mean leaf retention time in order to elucidate the factors affecting regional and local variations in stand-level leaf longevity in hinoki cypress (Chamaecyparis obtusa) plantations. Our study sites consisted of six stands at a low elevation (320–370 m a.s.l.) and 12 stands at a high elevation (850–970 m a.s.l.) in southwestern Japan. We also used published data on leaf longevity in stands at various elevations to clarify the regional-scale variations in leaf longevity and their relationships to environmental factors. At the regional scale, leaf longevity increased with increasing elevation and with decreasing air temperature, growing season length, and Kira’s warmth index across sites. Similar relationships were obtained for the variation in leaf mass. At the local scale, leaf longevity did not show a clear relationship with topographic position, soil water content, or soil C/N ratio. Contrary to our expectation, leaf longevity was negatively correlated with the leaf C/N ratio at both study sites, although the significance level was marginal. This indicates greater leaf longevity with better leaf nutrient status. Our results suggest that responses of leaf longevity in hinoki cypress stands to environmental factors would be more prominent at the regional scale than at the local scale, although large variation was detected at the local scale. Air temperature and growing season length appear to be the main drivers of the variation in leaf longevity at the regional scale, whereas the causal factors are unclear at the local scale.     

High pore fluid pressure may cause silent slip in the Nankai Trough

Silent-slip events have been detected at several subduction zones, but the cause of these events is unknown. Using seismic imaging, we detected a cause of the Tokai silent slip, which occurred at a presumed fault zone of a great earthquake. The seismic image that we obtained shows a zone of high pore fluid pressure in the subducted oceanic crust located down-dip of a subducted ridge. We propose that these structures effectively extend a region of conditionally stable slips and consequently generate the silent slip.     

Estimation of mean tree height using small-footprint airborne LiDAR without a digital terrain model

In order to estimate mean tree height using small-footprint airborne light detection and ranging (LiDAR) data, a digital terrain model (DTM), which is a continuous elevation model of the ground surface, is usually required. However, generating accurate DTMs in mountainous forests using only the LiDAR data is laborious and time consuming, because it requires human-assisted methods, especially in the forests with poor laser penetration rates. Based on our previous finding that a hypothetical continuous surface model passing through the predominant tree tops (hereafter, called the “top surface model” or TSM) might be nearly parallel to a DTM, we assumed that the vertical difference between the TSM and the ground return was the mean tree height. According to this assumption, we propose a new methodology that does not require a DTM to estimate mean tree height. This method completely, automatically, and directly estimates mean tree height (MTH _E) from the LiDAR data without requiring a regression analysis using reference data. From the relationships between the MTH _E and the observed mean tree height (MTH _O) in different hinoki cypress forests, we demonstrate that this method effectively estimates the mean tree height with nearly 1-m accuracy.     

Changes in nitrogen transformation in forest soil representing the climate gradient of the Japanese archipelago

Net nitrogen transformation was investigated under different climate conditions by soil transplantation and in situ incubation of forest surface soils using the resin-core method. Selected conditions were considered to reflect those of the natural climate gradient in the Japanese archipelago. Study sites were established in natural forests in northern Hokkaido (Uryu), northern Kanto (Kusaki), central Kinki (Kamigamo), and southern Kyushu (Takakuma), representing the northernmost to the southernmost island regions of Japan. Field experiments comparing soils incubated at “native” and “transplanted” sites were conducted from June 2008 to May 2009. Net production, accumulation, and leaching of soil ammonium (NH₄ ⁺) and nitrate (NO₃ ⁻) were measured at each of the sites during the growing season (June–October), the dormant season (November–May), and throughout the year. Net nitrate production was highest in Kusaki soil, especially during the growing season, whereas net ammonium production was highest in Uryu soil, the coldest site, especially during the dormant season. Net nitrate production increased significantly in soils transplanted to a warmer climate during the growing season. However, net ammonium production increased in soils transplanted to colder climates during the dormant season. These findings indicate that, with the exception of the infertile soil samples from Kamigamo, the range of natural climates in Japan has a significant effect on nitrogen availability in surface soil. In addition, the original characteristics of the nitrogen cycle of the surface soil from each native site were retained, even when marked changes in soil temperature (approximately 8°C) occurred after transplantation.     

Genetic diversity and pathogenicity of cucurbit-associated <Emphasis Type="Italic">Acidovorax</Emphasis>

Bacterial fruit blotch of cucurbits is a destructive disease caused by Acidovorax avenae subsp. citrulli, which is a typical seedborne pathogen. In seed health testing for this disease, we have detected many strains of Acidovorax with some differences from A. avenae subsp. citrulli. Their 16S rRNA sequences were divided into six types. The most common sequence was completely consistent with that of A. avenae subsp. avenae originally isolated from rice. The other sequences were over 99% similar but not identical to those of A. avenae subsp. avenae and A. avenae subsp. citrulli. Some commercialized antibodies against A. avenae subsp. citrulli reacted with several of these strains. Some of these strains incited yellow spots or brownish water-soaked lesions mainly on young true leaves of cucumber and squash after spray inoculation. Histological observations showed that these strains entered the leaf tissues of cucurbit plants through stomata and multiplied in the intercellular spaces of parenchymatous tissues as well as in the vascular tissues. The amount of bacterial multiplication and spread in the tissues differed among the strains, presumably reflecting their ability to induce symptoms. These isolated strains are therefore different from A. avenae subsp. citrulli, and their potential threat to the cultivation of cucurbits is lower than that of A. avenae subsp. citrulli.