Evaluation of genetic variation among wild rice populations in Cambodia

A total of 448 samples in five natural populations of wild rice (Oryza rufipogon) were collected in Cambodia. They were examined using 12 SSR and two chloroplast markers to evaluate the degree of variation among populations and the genetic structure within populations. In the two annual populations, the number of plants with homozygous alleles at all 12 SSR loci were high (66.3% and 79.5%), suggesting that these plants propagate mainly through self-pollination. In the three perennial populations, no individuals had all homozygous genotypes, but redundant genotypes resulted from clonal propagation were observed. Percentages of the redundant genotypes were highly varied (3.6%, 29.2% and 86.0%). This may be due to the different stable levels of environmental conditions. As for chloroplast genome, most of the wild plants showed the same chloroplast types as most Indica-type cultivars have. However, plants with different chloroplast types were maintained, even in the same population. In tropical Asian countries, many wild rice populations were observed under similar ecological conditions examined in this study. Therefore, the present results concerning population structure will be important to further elucidate genetic features of wild rice, and will also give strong clues to utilize and conserve wild natural genetic resources.     

Prevalence of Borna disease virus antibodies in healthy Japanese black cattle in Kyushu

Epidemiological studies have demonstrated that asymptomatic infection of Borna disease virus (BDV) is found in various species of animals in Japan. Recent reports have also revealed that neurological diseases caused by this virus could exist in horses, cattle, a dog, and cats in this country. In this study, we investigated seroprevalence of BDV antibodies in Japanese black cows reared in Kyushu, the southernmost main island of Japan, using ELISA and Western-immunoblotting. Of 101 serum samples, 11 (10.9%) and 21(20.7%) sera were identified as having antibodies to the BDV N and P antigens, respectively. Among the positive sera, three cows (2.9%) were seropositive for both of the antigens. Furthermore, interestingly, only female cows showed antibodies to P, whereas N antibodies were detected in male and female cows with a comparative ratio. Together with previous studies, our results indicate that BDV might be widely spread in cattle raised in Japan. Furthermore, this is the first report to show that beef cattle, Japanese black cattle, have antibodies against a possible zoonotic pathogen, BDV.     

Eucalyptus camaldulensis density and fiber length estimated by near-infrared spectroscopy

Density and fiber length belong to the parameters that are used by the pulping industry as indicators of wood quality for different industrial processes and final paper products. The feasibility of Fourier transform near-infrared (FT-NIR) spectroscopy for the non-destructive evaluation of fiber length and air-dry density of fast-growing E. camaldulensis from Thailand was investigated using 50 samples. NIR spectra taken from solid wood and air-dry density as well as fiber length were used for partial least squares (PLS) regression analyses. It is the first time that the fiber length of E. camaldulensis solid wood could be predicted with high accuracy and precision and that the ratios of performance to deviation (RPD) obtained are the first that fully fulfill the requirements of AACC Method 39-00 (AACC 1999) for screening in breeding programs (RPD?≥?2.5). The RPDs for cross-validation (test set validation) of the NIR-PLS-R models of 3.3 (3.8) for air-dry density and 3.5 (3.9) for fiber length allow drawing the conclusion that the models are at least applicable for screening in breeding programs as they lie in-between screening (RPD?≥?2.5) and quality control (RPD?≥?5). Even when 40% of the samples were removed in cross-validation of the air-dry density model, the RPD is 3.2, which confirms that the model is robust, stable, and well qualified for prediction. The good model statistics obtained in this study might be due to the fact that measurement sites for the measurement of NIR spectra, air-dry density, and fiber lengths were strictly coincided.     

Age Difference in Morphology and Immunohistology inthe Thymus and Spleen in Crl:CD (SD) Rats

We investigated chronological changes in immunohistochemical phenotyping in the thymus and spleen in Crl:CD rats up to the age of about one year. In the thymus, T cells increased markedly from 3 to 4 weeks of age. Proliferating cells also increased markedly at these points. B cells tended towards an increase with age. In the spleen, white pulp increased until 9 weeks of age and remained fairly stable thereafter. In the periarteriolar lymphoid sheath and marginal zone, T cells gradually increased until 9 weeks of age and became almost flat thereafter. In the lymph follicle, T cells increased with age. B cells tended towards an increase with age in all areas of the spleen. It was concluded that development of the thymus was most marked from 3 to 4 weeks of age and that both the thymus and spleen had matured by 9 weeks of age.     

Effects of late sowing on soybean yields and yield components in southwestern Japan

ABSTRACT

Soybean production in southwestern Japan tends to be unstable owing to wet soils during the rainy season. Although late sowing after the rainy season can avoid excess water, information on its yield potential is limited. The objective of this study was to reveal the effect of late sowing on yields and yield components of new soybean cultivars developed for warm regions. The experiment was conducted in 2016 and 2017 in Fukuyama, Hiroshima, Japan. Upland fields converted from paddy fields with a subirrigation system were planted in June (normal) or July (late sparse or late dense). Lodging was prevented with a net. The effects of late sowing and dense treatment were analyzed in relation to solar radiation use. In 2016, differences in yield among cultivars and among environments were not significant. In 2017, yield was significantly reduced following late sparse sowing. The total aboveground dry matter at maturity was correlated with total solar radiation intercepted (r = 0.76) but not with radiation use efficiency (r = 0.47). Late sowing increased harvest index (HI) significantly from 0.464 to 0.571 in 2016 and from 0.524 to 0.585 in 2017, but density had no significant effect. The changes in HI were correlated with stem dry weight (r = ?0.80 in 2016 and r = ?0.79 in 2017) rather than seed yield (r = 0.08, n.s. in 2016 and r = 0.19, n.s. in 2017). Thus, under irrigation, late dense sowing might stabilize yield in southwestern Japan because of higher HI.

Abbreviations: DM: dry matter; FOEAS: farm-oriented enhancing aquatic system; HI: harvest index; RUE: radiation use efficiency     

Effects of maturity genes E2 and E3 on yield formation in soybean cultivar Enrei in warm region,Fukuyama in Japan

ABSTRACT

Understanding how maturity genes affect soybean yield formation will provide important information for crop management decisions. This study aimed to reveal how maturity genes E2 and E3 in the soybean cultivar ‘Enrei’ affect yields and yield formation in warm regions of Japan. ‘Enrei’ (e2e3) and three near-isogenic lines of ‘Enrei’ (e2E3, E2e3, and E2E3) were cultivated in 2016 and 2017 in Fukuyama, Japan (34°30′N, 133°23′E). Two sowing dates were set in each year (June sowing and July sowing). E2 extended the period from emergence to R1 and also the period from R1 to R7, whereas E3 extended only the period from emergence to R1. Interaction between E2 and E3 did not affect duration of the period from emergence to R1, but did affect the period from R1 to R7. Although seed yield did not differ between genotypes in the June sowings, the effects of E2 and E3 on seed yield in July sowing were both significant and interaction between E2 and E3 also observed. The total number of nodes increased in E3 genotypes in both sowing dates, especially in E2E3. Pod-set ratio was lower in E2 and E3 genotypes than in e2 and e3 genotypes in the June sowings, but did not differ between genotypes in the July sowings. The high yield of E2E3 genotypes in the July sowings was attributed to increased number of nodes and flower production while maintaining pod-set ratio. Appropriate choice of sowing date is suggested to be essential when using E3 genotypes.Abbreviations: HI: harvest index; NIL: near-isogenic line; RUE: radiation use efficiency; TDM: total above-ground dry matter; TRI: total solar radiation intercepted     

Anther culture in rice proportionally rescues microspores according to gametophytic gene effect and enhances genetic study of hybrid sterility

Background

To investigate plant hybrid sterility, we studied interspecific hybrids of two cultivated rice species, Asian rice (Oryza sativa) and African rice (O. glaberrima). Male gametes of these hybrids display complete sterility owing to a dozen of hybrid sterility loci, termed HS loci, but this complicated genetic system remains poorly understood.

Results

Microspores from these interspecific hybrids form sterile pollen but are viable at the immature stage. Application of the anther culture (AC) method caused these immature microspores to induce callus. The segregation distortion of 11 among 13 known HS loci was assessed in the callus population. Using many individual calli, fine mapping of the HS loci was attempted based on heterozygotes produced from chromosome segment substitution lines (CSSLs). Transmission ratio distortion (TRD) from microspores was detected at 6 of 11 HS loci in the callus population. The fine mapping of S₁ and S₁₉ loci using CSSLs revealed precise distances of markers from the positions of HS loci exhibiting excessive TRD.

Conclusions

We demonstrated that AC to generate callus populations derived from immature microspores is a useful methodology for genetic study. The callus population facilitated detection of TRD at multiple HS loci and dramatically shortened the process for mapping hybrid sterility genes.

     

Interspecific variations in age and size at settlement of 8 emperor fishes (Lethrinidae) at the southern Ryukyu Islands,Japan

Molecular and otolith analyses were conducted for 173 settlement-stage larvae of emperor fishes (family Lethrinidae) collected by light traps at Ishigaki Island, southern Japan, in July and August (summer season), to (1) present diagnostic DNA markers for identification of lethrinid species and (2) compare the size and age at settlement of each species. PCR–RFLP and direct nucleotide sequencing analyses identified 8 species. Size (standard length, SL) at settlement differed significantly between species; Lethrinus ornatus (mean SL ± SD, 12.8 ± 1.5 mm), L. obsoletus (14.2 ± 0.8 mm) and L. harak (15.8 ± 1.6 mm) settled at a smaller size than L. atkinsoni (17.0 ± 1.3 mm), L. genivittatus (17.3 ± 1.0 mm), L. olivaceus (18.1 ± 0.6 mm), L. nebulosus (18.6 ± 4.2 mm), and L. sp.2 reported by Lo Galbo et al. (J Mol Evol 54:754–762, 2002) (21.7 ± 1.4 mm). Age at settlement tends to increase with settlement size; L. obsoletus (mean age ± SD, 25.6 ± 1.2 days), L. atkinsoni (26.1 ± 2.1 days) and L. ornatus (26.3 ± 2.9 days) were younger at settlement than L. nebulosus (28.4 ± 2.1 days), L. harak (29.2 ± 1.7 days), L. olivaceus (29.5 ± 1.0 days), L. genivittatus (30.5 ± 1.7 days) and L. sp.2 (31.0 ± 2.0 days). Although our study showed interspecific variation in body size and age at settlement among 8 lethrinid species, further seasonal replication is necessary to clarify the general patterns.