Biochemical and genomic analysis of neoculin compared to monocot mannose-binding lectins

Neoculin occurring in an edible tropical fruit is a heterodimeric protein which has both sweetness and a taste-modifying activity that converts sourness to sweetness. Both the primary and the overall tertiary structures of neoculin resemble those of monocot mannose-binding lectins. This study investigated differences in biochemical properties between neoculin and the lectins. Structural comparison between the mannose-binding sites of lectins and the corresponding regions of neoculin showed that there is at least one amino acid substitution at each site in neoculin, suggesting a reason for the lack of its mannose-binding ability. This was consistent with hemagglutination assay data demonstrating that neoculin had no detectable agglutinin activity. DNA microarray analysis indicated that neoculin had no significant influence on gene expression in Caco-2 cell, whereas kidney bean lectin (Phaseolus vulgaris agglutinin) greatly influenced various gene expressions. These data strongly suggest that neoculin has no lectin-like properties, encouraging its practical use in the food industry.     

Dietary supplementation with autochthonous Bacillus cereus improves growth performance and survival in tambaqui Colossoma macropomum

The aim of this study was to evaluate the effect of dietary supplementation with the autochthonous probiotic bacteria Bacillus cereus on growth performance, haematological parameters and survival of tambaqui (Colossoma macropomum). Tambaqui fingerlings (0.94 ± 0.02 g) were fed for 120 days the following diets: basal (without probiotic) and three supplemented diets (4.2 × 10⁴, 3.9 × 10⁶ and 3.3 × 10⁸ CFU/g). Growth performance and haematological parameters were evaluated every 30 days. Thereafter, fish were challenged against Aeromonas hydrophila and survival was evaluated. Probiotic B. cereus improved weight and length gains (p < 0.05), and increased neutrophils and thrombocyte counts (p < 0.05) in tambaqui supplemented with 3.9 × 10⁶ CFU/g diet. Challenged fish fed unsupplemented diet presented the lowest survival rate (33.4%) while fish fed diets supplemented at 4.2 × 10⁴, 3.9 × 10⁶ and 3.3 × 10⁸ CFU/g B. cereus had 88.8%, 80.5% and 80.5% relative per cent survival respectively. These results demonstrated that B. cereus supplemented as probiotics to C. macropomum for 120 days improved physiological and haematological responses, leading to enhanced survival in this fish species.     

Association between the planktonic larval and benthic stages of Manila clam <Emphasis Type="Italic">Ruditapes philippinarum</Emphasis> in eastern Hokkaido,Japan

The association between planktonic larval and benthic stages of Manila clam Ruditapes philippinarum and factors determining successful recruitment were studied in Akkeshi-ko estuary and Akkeshi Bay, Hokkaido, northern Japan. The field study showed that planktonic larvae were localized mainly in the bay after dispersal from the estuary and recruitment to the estuarine fishing grounds was not always successful. A numerical analysis suggested that estuarine circulation transported tracers, used to simulate planktonic larva, from the estuary to the bay but the number of returning tracers varied depending on the river discharge and wind direction. The planktonic larvae were affected by unsuitable conditions for survival in the estuary, such as high turbidity. We conclude that most larvae develop within the bay, where conditions are more saline and less turbid, and that although return to the estuary is essential for recruitment, it is not necessarily related to the abundance of larvae.     

Diversity and community structure of wood-inhabiting fungi found in Japanese wooden houses analyzed by the next-generation sequencing

The diversity and community structures of wood-inhabiting fungi in 16 decayed wood samples from ten wooden houses in Japan were analyzed using a next-generation sequencing (NGS) to determine the fungi responsible for wood decay. DNA of fungi in decayed wood was extracted directly, the internal transcribed spacer (ITS) region in ribosomal DNA (rDNA) was amplified by polymerase chain reaction (PCR), and then, sequences of tagged ITS fragments were analyzed by NGS. Results of sequencing indicated that 68 species of ascomycetes, 37 species of basidiomycetes, and one fungus each from Mortierellales and Mucoromycetes were detected. The fungal community structures showed diversity and included various species of ascomycetes. A microscopic examination of cell wall structure in decayed wood samples suggested that some ascomycetes were soft-rot fungi. Heat map analysis indicated that the similarity in the structures of fungal communities was influenced to a greater extent by the wood species of samples than where they were used as a component.     

Lignification in developing culms of bamboo <Emphasis Type="Italic">Sinobambusa tootsik</Emphasis>

Bamboos are among the largest woody grasses and grow very rapidly. Although lignin is a crucial factor for the utilization of bamboo biomass, the lignification mechanism of bamboo shoots is poorly understood. We studied lignification in the bamboo Sinobambusa tootsik during culm development. Elongation growth began in May and ended in late-June, when the lignin content was approximately half that in mature culms. Thioacidolysis analysis indicated that p-hydroxyphenyl units in lignin formed even at late stages of lignification. The syringyl/guaiacyl ratio varied during culm development. Various lignin precursors were detected in developing culms by liquid chromatography–mass spectrometry. The ferulic acid content decreased from May to June, indicating that ferulic acid was utilized in early stages of cell wall formation. Monolignol glucosides were detected at early stages of lignification, whereas the contents of monolignols, coniferaldehyde, sinapaldehyde, p-coumaric acid, and ferulic acid peaked at later stages of lignification. Therefore, lignin precursors may be supplied differentially during the lignification process. In August, the rate of lignification decreased, although the contents of various lignin precursors peaked, implying that the rate-limiting step in the cessation of lignification in bamboo is transport or polymerization of lignin precursors, rather than their biosynthesis.     

农杆菌介导的稻瘟病菌致病突变菌株的筛选

 利用1个致病能力非常弱的稻瘟病菌菌株CY2和农杆菌介导T-DNA方法,已成功地获得了5000多个转化子,并以多个转化子混合接种含25个不同抗病基因的近等基因系,获得了30个致病突变体。但突变体针对不同的无毒基因有很大差别,从含有Pi-ta²的F128-1上获得了14个突变体,从含有Pi-a的IRBL-2上获得了7个突变体,从含有Pik-s的IRBL-4上获得了2个突变体,而从其它抗病基因的品系上未发现任何突变体,故T-DNA似乎有插入热点。不同突变体在携带相同抗病基因的品系上的致病性存在很大差异,表明这些近等基因系可能还携带其它抗稻瘟病基因。CY2不能侵染普遍认为不含抗稻瘟病基因的丽江新团黑谷(LTH),而7个突变体则能成功地使其发病,表明LTH亦含有抗稻瘟病基因。     

Effects of thiosulfate addition on ammonia and nitrogen removal in biofilters packed with Oyaishi (pumice tuff)

Ammonia removal is achieved partly by absorption and nitrification in biofilters, resulting in the accumulation of nitrogen and the necessity of treating the effluent water. We investigated the effects of thiosulfate addition to a biofilter containing pumice tuff for ammonia and nitrogen removal in a laboratory‐scale experiment. The addition of thiosulfate to the circulating water led to a decreased nitrate and nitrite along with an increase of sulfate. The inorganic nitrogen in the circulating water decreased by up to 44% with thiosulfate addition compared to without thiosulfate. Batch experiments revealed that denitrification activity decreased exponentially along with increases in dissolved oxygen; however, approximately 30% of denitrification activity was maintained at dissolved oxygen concentration of 3.3 mg/L. Metabarcoding of 16S rRNA genes indicated that the genus Thiobacillus had a relative abundance of 0.002%–0.016% of total bacteria in the biofilter packing material. The circulating water pH was decreased below 5 with sulfur oxidation, and ammonium was accumulated without pH control resulting in a decrease in the relative abundance of the family Nitrosomonadaceae. Its relative abundance increased with control of pH to near neutral, indicating that ammonia‐oxidizing activity could be maintained by adjusting pH. Thiosulfate addition could stimulate nitrogen removal by sulfur‐dependent denitrification in biofiltration systems.     

Interspecific variation in wildlife responses to cattle,swine and chicken feed in the forests surrounding poultry farms

To strengthen farm biosecurity, wildlife behaviors around livestock environments require significant attention. Livestock feed is considered one of essential factors that attract wildlife to the livestock environment. We experimentally studied wildlife response to cattle, swine, and chicken concentrated feeds in the forests surrounding poultry farms. In 14 feeding sites, four feed conditions were established: without feed (control); cattle feed; chicken feed; and swine feed. Wildlife behaviors at each feed point were monitored using infrared cameras. In 3,175 videos, 10 mammals were photographed on 10 or more occasions. Wildlife more frequently appeared at the points with feed than without feed. In addition, the number of videos that captured foraging or interest behaviors was largest for swine feed, followed by chicken feed, then cattle feed. There was a large difference among wildlife in their response to livestock feeds, although each species did not have a strong preference for a specific feed. Livestock feeds invite frequent visits by high and moderate response groups, especially omnivores and carnivores with omnivorous tendencies. Therefore, to protect against such wildlife intrusion, leftover feed and feed storage must be properly managed. This study also suggests that livestock feeds may not cause intrusions by rare response group species; hence, if their intrusions occur, they may be due to factors other than livestock feed. The study situation can partly reflect actual feed-stealing situations. The results will contribute to consider the properly management to protect livestock environments from wildlife intrusions.