Ubiquitin C-terminal hydrolase L1 deficiency decreases bone mineralization

Ubiquitin C-terminal hydrolase L1 is a component of the ubiquitin proteasome system, which evidences unique biological activities. In this study, we report the pattern of UCH-L1 expression, and show that it regulates bone mineralization in osteogenesis. UCH-L1 was expressed in osteoblasts, osteoclasts, and hematopoietic precursor cells of bone marrow in the metaphysis and diaphysis of the femora. To further assess the involvement of UCH-L1 in the regulation of bone mineralization, we evaluated the bone mineral density (BMD) rate of gad mice, using the Latheta computed tomography system. Male gad mice evidenced a significantly decreased BMD rate in the metaphysis and diaphysis of the femora. These findings of decreased BMD rate in the bones of gad mice may suggest that UCH-L1 function regulates bone mineralization during osteogenesis.     

Comparison of biomass estimates from multiple stratification approaches in a swept area method for Pacific saury Cololabis saira in the western North Pacific

Fishery-independent surveys using sea surface trawl nets for Pacific saury Cololabis saira in the western North Pacific since 2003 have enabled the investigation of their annual distribution patterns and total biomass during June and July, prior to the main fishing season in Japan. We compared biomass estimates and their associated variances derived based on five different post-stratification approaches in a swept area method, and then observed that these approaches have little effect on biomass estimates and their precision, owing to well-organized survey designs and homogeneously allocated sampling stations. We were able to utilize decreasing biomass estimates for 15 years as an essential abundance index in the ongoing stock assessment. Notably, examination based on stratification along with longitudinal survey lines indicated that the estimated biomass had decreased in the western survey area, resulting in an eastward shift in the gravity center of Pacific saury distribution after 2010. We recommend biomass estimation in an east–west direction based on longitudinal stratification as an effective measure to develop population dynamics models which reflect westward migration into the fishing grounds around Japanese coastal waters, and to forecast the expected catch during the subsequent fishing period.

     

Allozyme variation of littleneck clam Ruditapes philippinarum and genetic mixture analysis of foreign clams in Ariake Sea and Shiranui Sea off Kyushu Island, Japan

ABSTRACT:   Allozyme variation of the littleneck clam Ruditapes philippinarum was evaluated in four samples from Nameishi and Matsuo in the Ariake Sea, Ryugatake and Ushibuka in the Shiranui Sea off Kyushu Island, Japan, and in one sample from Jinzhou, China, in the Bohai Sea. A Ruditapes bruguieri sample imported from the Korean Bay off Nampo, North Korea was also studied. Among the R. philippinarum samples, heterozygosity varied from 0.265 to 0.301 and F _IS estimates indicated significant homozygosity excess in 15 of 40 loci analyzed. Deviations from Hardy–Weinberg equilibrium were significant in all samples ( P  < 0.05). Pairwise F _ST estimates indicate that genetic differences between the Chinese and Japanese samples were very low, but significantly different from zero. Mixture proportions with 95% confidence intervals of Chinese R. philippinarum in Nameishi and Matsuo were estimated at 0.4098 [0.2512, 0.5705] and 0.4899 [0.3262, 0.6540], respectively. However, genetic invasion of stocked Chinese R. philippinarum into wild populations in the Ariake Sea remains uncertain due to the low precision of the estimates caused by the high similarity of allele frequencies between Jinzhou and the Ariake Sea.     

Soil management: The key factors for higher productivity in the fields utilizing the system of rice intensification (SRI) in the central highland of Madagascar

The system of rice intensification (SRI) developed in Madagascar in the 1980s has been promoted as an integrated crop and resource management approach to rice-cultivation, especially for resource-limited smallholder farms. While advocates have claimed that SRI could boost rice yields with less external input, many criticisms have challenged its effectiveness regarding yields and applicability to larger-scale rice farming systems. In this study, we conducted a field survey and on-farm experiments to assess rice yield performance and key management practices on a few of the early SRI-practicing smallholder farms in the central highland of Madagascar.Rice grain yields at the survey fields were 9.9 t ha⁻¹ maximum without using mineral fertilizer. Deep plowing to the depth of 25–30 cm as well as SRI practices have been conducted continuously since the early 1990s. In addition, an effective drainage system facilitated intensive water management at these high-yielding fields. On-farm experiments demonstrated some yield increases with no interaction for the examined SRI practices, though the effects were not great enough to explain the high yields at these fields. The soils of these high-yielding fields contained relatively large amounts of soil organic carbon (SOC) from the surface to the deep soil layers, and the soil mineralizable nitrogen was closely correlated with rice grain yields.The results indicated that the high yields at the fields of those who were early to adopt SRI were mainly due to the soil fertility associated with great nitrogen-supplying ability, rather than ‘synergetic effects’ of the SRI components. This high N-supplying ability of the soil and accumulated SOC from surface to deep soil layers were attributable to the long-term combined practices of extensive organic applications and deep plowing. Soil hydrology could be another key factor stimulating high rates of soil N-mineralization.These management practices were, however, only applied to the limited numbers of fields within less than 1.0 ha of total landholdings of these farmers due to the great demand in labor and organic resources and the difficulty in controlling irrigation water. Intensive weeding and widely spaced transplanting of young seedlings were also performed in the fields with irrigation and drainage systems sufficient to avoid yield losses from flooding and drought. Although extensive and long-term systematic research is further required to fully assess the benefits of this sort of intensive management as opposed to conventional methods, the preferential allocation of intensive management by the successful SRI-adopters might be the implication of its location-specificity and difficulty in scaling up even within the resource-limited smallholder farms.     

Spawning grounds of red sea bream in the east Seto Inland Sea

We surveyed the distribution of red sea bream eggs between 2006 and 2010 in the east Seto Inland Sea to determine the location of the spawning grounds and the characteristics of preferred spawning habitats. We identified early-development stage red sea bream eggs using a monoclonal antibody assay. The early-development stage eggs were present in waters around Awaji Island (AW area) and around Ieshima Island, Shodo Island, and Bisan Seto (collectively the ISB area). The mean red sea bream egg density in the AW area was not significantly different from that in the ISB area. Based on the locations where we observed early-development stage eggs and the density of eggs, the ISB and AW areas appeared to be the primary spawning grounds in the east Seto Inland Sea during the survey period. A quotient analysis suggested that spawning fish had clear preferences for physical conditions. The areas suitable for spawning appear to be those with sandy substrate at a depth of 30–70 m. The temperature range suitable for spawning was between 16.5 and 21.5 °C.     

Life cycle of <Emphasis Type="Italic">Dilophus okamurae</Emphasis> (Phaeophyceae) and its associated invertebrate fauna in Onagawa Bay,Japan

ABSTRACT:   The life cycle of Dilophus okamurae and the associated benthic invertebrate fauna were studied monthly or bimonthly from June 1998 to September 1999 at a depth of 4–7 m in Onagawa Bay along the Pacific coast of north-eastern Honshu, Japan (38°28'N, 149°29'E). Dry biomass ranged from 230 g/m² in June to 10 g/m² in October. Sporophytes with tetrasporangia appeared during July to September 1998. Gametophytes with oogonia or antheridia were observed for the first time in May 1999 during observation. The absence of mature sporophytes in 1999 suggests that the life cycle is completed over two years. The sympatric gastropods Lirularia iridescens , Homalopoma sangrarense, Conotalopia minima and Cantharidus callichroa synchronized with seasonal changes in biomass of this algae. In contrast, Barleeia angustata and B. trifasciata fluctuated independently. The juvenile sea urchin Strongylocentrotus nudus appeared in the algal population starting in October at 0.7 mm mean test diameter at high density, and disappeared after March.     

Validation of otolith daily increments for larval and juvenile Japanese halfbeak Hyporhamphus sajori

Daily ring formation was verified by examining the growth of the marginal increment on sagittal otoliths of larval and juvenile Japanese halfbeak Hyporhamphus sajori. The relationship between age (x) and number of increments (y) is y = 1.0x + 2.0. The first daily increment was formed during the 2 days before hatching. The relationship between the number of rings deposited after the alizarin complexone (ALC) mark (x) and the number of increments (y) is given by: y = 1.0x − 0.2. The index of completion of the marginal increment was 99 ± 4.1% (mean ± S.D.) at 04:00, and from 24 ± 4.4% at 08:00 it increased with time of day and reached 98 ± 3.6% until the next day at 04:00. Growth of the incremental zone started a few hours after sunrise prior to which the discontinuous zone seemed to be formed. Light rhythms tend to be one of the most important factors for the formation of the marginal increment on otoliths. Based on the relationships between time of day and the marginal increment on otoliths, it would be possible to estimate the predation time for specimens retrieved from stomach contents, and also clearer analysis of the growth history immediately prior to the sampling time.     

Offshore currents explain the discontinuity of a fish community in the seagrass bed along the Japanese archipelago

Oceanographic conditions can affect spatial variability in fish community structures by influencing the temperature‐dependent latitudinal distribution of adult fishes and transport during their young stages. In order to examine latitudinal variability in the fish community structure within a single coastal ecosystem, quantitative sampling was conducted in the sub‐tidal zone of seagrass Zostera marina beds over a broad latitudinal scale (31.31–43.0°N: from subtropical to sub‐boreal zones, covering 80% of the latitudinal range of seagrass distribution in Japan) in the western North Pacific based on a uniform methodology. Cluster analysis with the similarity of fish communities showed that 13 sampling sites were divided into two clusters. The border between the two clusters corresponded with the area of mixing of two dominant currents, Oyashio and Kuroshio, which form a border between the warm temperate zone and the cool temperate zone off the Pacific coast of Japan. Oceanographic properties, such as major currents off the coast, are suggested to affect the latitudinal variability in the fish communities in the coastal ecosystem in the western North Pacific.     

Extracellular signal-regulated kinase (ERK) activation in chicken heterophils stimulated with phorbol 12-myristate 13-acetate (PMA), Formyl-methionylleucyl-phenylalanine (fMLP) and lipopolysaccharide (LPS)

The signaling pathways leading to the activation of extracellular signal-regulated kinase (ERK) by phorbol 12-myristate 13-acetate (PMA), formyl-methionylleucyl-phenylalanine (fMLP) and lipopolysaccharide (LPS) in chicken heterophils were examined. To determine the mechanism of ERK's activation and its relation with the influx of calcium ions, heterophils were stimulated by PMA, fMLP and LPS. ERK was not activated by fMLP. LPS- and PMA-stimulated activation of ERK, based on Western blotting with antibodies against the phosphorylated form of ERK, was attenuated by the pretreatment of cells with the intracellular calcium chelator BAPTA/AM (1,2-bis (o-aminophenoxy) ethane-N,N,N',N'-tetraacetic acid) but not with the extracellular calcium chelator EGTA (glycol-bis(2-aminoethylether)-N,N,N',N'-tetraacetic acid). Exposure of cells to the protein kinase C (PKC) inhibitor GF109203X inhibited the LPS- and PMA-stimulated phosphorylation of ERK in a concentration-dependent manner. The LPS-stimulated phosphorylation was inhibited by pretreatment with the phospholipase C (PLC) inhibitor U73122 but not the phosphatidylinositol 3-kinase (PI₃K) inhibitor LY294002. These results indicate that the LPS-induced phosphorylation of ERK in the chicken heterophils is mediated by PLC, PKC and intracellular calcium, and the PMA-stimulated phosphorylation is dependent on intracellular calcium ion and PKC.