International Harmonization of Nomenclature and Diagnostic Criteria (INHAND) progress to date and future plans

The INHAND Proposal (International Harmonization of Nomenclature and Diagnostic Criteria for Lesions in Rats and Mice) has been operational since 2005. A Global Editorial Steering Committee (GESC) manages the overall objectives of the project and the development of harmonized terminology for each organ system is the responsibility of the Organ Working Groups (OWG), drawing upon experts from North America, Europe and Japan.Great progress has been made with 9 systems published to date – Respiratory, Hepatobiliary, Urinary, Central/Peripheral Nervous Systems, Male Reproductive and Mammary, Zymbals, Clitoral and Preputial Glands in Toxicologic Pathology and the Integument and Soft Tissue and Female Reproductive System in the Journal of Toxicologic Pathology as supplements and on a web site – www.goreni.org. INHAND nomenclature guides offer diagnostic criteria and guidelines for recording lesions observed in rodent toxicity and carcinogenicity studies. The guides provide representative photo-micrographs of morphologic changes, information regarding pathogenesis, and key references. During 2012, INHAND GESC representatives attended meetings with representatives of the FDA Center for Drug Evaluation and Research (CDER), Clinical Data Interchange Standards Consortium (CDISC), and the National Cancer Institute (NCI) Enterprise Vocabulary Services (EVS) to begin incorporation of INHAND terminology as preferred terminology for SEND (Standard for Exchange of Nonclinical Data) submissions to the FDA. The interest in utilizing the INHAND nomenclature, based on input from industry and government toxicologists as well as information technology specialists, suggests that there will be wide acceptance of this nomenclature. The purpose of this publication is to provide an update on the progress of INHAND.     

Longitudinal data collection of Mycobacterium avium subspecies Paratuberculosis infections in dairy herds: the value of precise field data

Longitudinal infection data on Mycobacterium avium subspecies paratuberculosis (MAP) was collected on three dairy farms in Northeastern United States during approximately 10 years. Precise data on animal characteristics and animal location within farm were collected on these farms. Cows were followed over time with regard to MAP status during biannual fecal and serum sampling and quarterly serum sampling. Approximately 13 000 serum samples, 6500 fecal samples and 2000 tissue samples were collected during these years. Prevalence of positive samples was 1.4% for serological samples, 2.2% in fecal samples and 16.7% in tissue samples. Infection dynamics of MAP was studied and resulted in a number of potential changes in our understanding of MAP infection dynamics. First, a high prevalence of MAP infection was observed in these herds due to lifetime follow up of cows, including slaughter. Second, two distinctly different infection patterns were observed, so called non-progressors and progressors. Non-progressors were characterized by intermittent and low shedding of MAP bacteria and a virtual absence of a humoral immune response. Progressors were characterized by continuous and progressive shedding and a clearly detectable and progressive humoral immune response. Strain typing of MAP isolates on the three farms identified on two of three farms a dominant strain type, indicating that some strains are more successful in terms of transmission and infection progression. Continuous high quality longitudinal data collection turned out to be an essential tool in our understanding of pathobiology and epidemiology of MAP infections in dairy herds.     

Escherichia coli challenge and one type of smectite alter intestinal barrier of pigs

An experiment was conducted to determine how an E. coil challenge and dietary clays affect the intestinal barrier of pigs. Two groups of 32 pigs （initial BW： 6.9 ± 1.0 kg） were distributed in a 2 x 4 factorial arrangement of a randomized complete block design （2 challenge treatments： sham or E. coil, and 4 dietary treatments： control, 0.3% smectite A, 0.3% smectite B and 0.3% zeolite）, with 8 replicates total. Diarrhea score, growth performance, goblet cell size and number, bacterial translocation from intestinal lumen to lymph nodes, intestinal morphology, and relative amounts of sulfo and sialo mucins were measured. The E. coli challenge reduced performance, increased goblet cell size and number in the ileum, increased bacterial translocation from the intestinal lumen to the lymph nodes, and increased ileal crypt depth. One of the clays （smectite A） tended to increase goblet cell size in ileum, which may indicate enhanced protection. In conclusion, E. coli infection degrades intestinal barrier integrity but smectite A may enhance it.     

Distribution pattern of total lipids and lipid fractions in forest humus

Mull, moder, and mor humus profiles were investigated for their total lipid contents and the behaviour of lipid-phosphorus and of five neutral lipid classes identified by HPTLC. The quantitative distribution of total and neutral lipids among the humus types is, besides by natural differences between the various parent litter materials, mainly controlled by soil physicochemical properties. In particular strongly acidic conditions, i.e. conditions corresponding to a reduced biological activity, inhibit significantly the decomposition of lipid compounds in (moder and) mor humus. A feature of the lipid depth functions is the input of microbial and root litter-derived lipid material in the fermentation layers and a considerable lipid accumulation in the A horizons, probably at least partly due to mechanical transport processes. Phospholipids show no distinct variation dependent on the humus type, as far as the organic layers are concerned. But obviously, lipid-P in the mineral, soil is closely correlated with, and therefore is a valuable measure for, the overall biological activity increasing from mor to moder and mull humus.     

Transformation of organic rhizodepositions by rhizosphere bacteria and its influence on the availability of tertiary calcium phosphate

This study assesses the influence of saccharides in the rhizodeposition on the phosphate solubilizing ability of rhizosphere bacteria. Water‐soluble rhizodeposits were analyzed of ¹⁴C‐labeled pea plants (Pisum sativum, cv. ‘Grapis’) which were grown at two different levels of P‐nutrition. The sugars produced were fed in vitro either as single compounds or as synthetic mixtures to three bacterial strains and the ability of the bacteria to mobilize Ca₃(PO₄)₂ was measured. The relative glucose proportion of pea exudates decreased under P deficiency while the content of galactose, ribose, xylose and fucose increased. In vitro feeding of single sugars and sugar mixtures showed that the ability of Pseudomonas fluorescens (PsIA12) to dissolve tertiary calcium phosphate was lower with pentoses and the mixed sugars of the P‐deficient plants than with glucose. On the other hand, the shifted sugar pattern observed under P deficiency increased the phosphate mobilization ability of Pantoea agglomerans (D5/23) and Azospirillum sp. (CC 322) considerably. This observation can only partly be explained by the acidification of the nutrient medium. Bacteria also produced different carboxylic anions depending on sugar supply. In addition to low‐molecular mono‐, di‐, and tricarboxylic acids which are known as P‐solubilizing substances, sugar acids also played an important role in cultures D 5/23 and CC 322.     

The influence of nitrate and ammonium fertilization on N2O release and CH4 uptake of a well-drained topsoil demonstrated by a soil microcosm experiment

The effects of the application of KNO₃ and NH₄Cl (100 kg N ha^?1) on N₂O release and CH₄ uptake by a well-aerated topsoil (porosity: 55%, water-filled pore space: 67% of the total pore space) were studied in a laboratory incubation experiment over 50 days using a soil microcosm system with an automated registration of N₂O and CH₄ fluxes. The total N₂O-N losses over 50 days were low for all treatments and amounted to 0.9 mg m^?2 for the control, 1.2 mg m^?2 for the soil columns fertilized with KNO3, and 7.3 mg m^?2 for the soil columns fertilized with NH₄Cl. The slightly elevated N₂O release after the application Of NH₄Cl was associated with the nitrification of NH₄⁺ added. Only ?0.06% of the fertilized NH₄?N was lost as N₂O. This nitrogen fertilization reduced the CH₄ uptake of the soil columns by 43% (NH₄Cl) and 21% (KNO₃), respectively.     

Spatial distribution of soil heavy metal concentrations as indicator of pollution sources at Mount Križna (Great Fatra,central Slovakia)

The objective of this study was to test the suitability of a simple approach to identify the direction from where airborne heavy metals reach the study area as indication of their sources. We examined the distribution of heavy metals in soil profiles and along differently exposed transects. Samples were taken from 10 soils derived from the same parent material along N-, S-, and SE-exposed transects at 0—10, 10—20, and 20—40 cm depth and analyzed for total Al, Cd, Cr, Cu, Fe, Mn, Ni, Pb, and Zn concentrations. The heavy metal concentrations at 0—10 cm were larger than background concentrations in German arable soils except for Cr (Cd: 0.6—1.8 mg kg^—1; Cr: 39—67; Cu: 40—77; Ni: 87—156; Pb: 48—94; Zn: 71—129; Fe: 26—34 g kg^—1; Mn: 1.1—2.4). Decreasing Cd, Cu, Mn, and Pb concentrations with increasing soil depth pointed at atmospheric inputs. Aluminum and Ni concentrations increased with soil depth. Those of Fe, Cr, and Zn did not change with depth indicating that inputs at most equalled leaching losses. The Pb accumulation in the surface layer (i.e. the ratio between the Pb concentrations at 0—10 to those at 20—40 cm depth) was most pronounced at N-exposed sites; Pb obviously reached Mount Križna mainly by long-range transport from N where several industrial agglomerations are located. Substantial Cd, Cu, and Mn accumulations at the S- and SE-exposed sites indicated local sources such as mining near to the study area which probably are also the reason for slight Cr and Zn accumulations in the SE-exposed soils. Based on a principal component analysis of the total concentrations in the topsoils four metal groups may be distinguished: 1. Cr, Ni, Zn; 2. Mn, Cd; 3. Pb (positive loading), Cu (negative loading); 4. Al, Fe, indicating common sources and distribution patterns. The results demonstrate that the spatial distribution of soil heavy metal concentrations can be used as indication of the location of pollution sources.     

Inherent interreplicate variability during small-scale rainfall simulations

Purpose

The validity of soil erosion data is often questioned because of the variation between replicates. This paper aims to evaluate the relevance of interreplicate variability to soil and soil organic carbon (SOC) erosion over prolonged rainfall.

Materials and methods

Two silty loams were subjected to simulated rainfall of 30 mm h^?1 for 360 min. The entire rainfall event was repeated ten times to enable statistical analysis of the variability of the runoff and soil erosion rates.

Results and discussion

The results show that, as selective removal of depositional particles and crust formation progressively stabilized the soil surface, the interreplicate variability of runoff and soil erosion rates declined considerably over rainfall time. Yet, even after the maximum runoff and erosion rates were reached, the interreplicate variability still remained between 15 and 39 %, indicating the existence of significant inherent variability in soil erosion experiments.

Conclusions

Great caution must be paid when applying soil and SOC erosion data after averaging from a small number of replicates. While not readily applicable to other soil types or rainfall conditions, the great interreplicate variability observed in this study suggests that a large number of replicates is highly recommended to ensure the validity of average values, especially when extrapolating them to assess soil and SOC erosion risk in the field.