Statistical Modelling of Neighbor Treatment Effects in Aquaculture Clinical Trials

In the design of clinical trials involving fish observed over time in tanks, there may be advantages in housing several treatment groups within the same tank. In particular, such “within-tank” designs will be more efficient than designs with treatment groups in separate tanks when substantial between-tank variability is expected. One potential problem with within-tank designs is that it may not be possible to include all treatments in one tank; in statistical terms this means that the blocks (tanks) are incomplete. In incomplete block designs, there may be a concern that the treatments present in the same tank (denoted here as “neighbors”) affect each other in their performance; thus the need for an assessment of neighbor effects. In this paper, we propose two statistical approaches to assess and account for neighbor effects. The first approach is based on a non-linear mixed model and the second involves cross-classified and multiple membership models. Both approaches are illustrated on simulated data as well as data from a clinical ISAV (Infectious Salmon Anaemia Virus) trial; corresponding computer code is available online.     

The Solar Acoustic Spectrum and Eigenmode Parameters

The Global Oscillation Network Group (GONG) project estimates the frequencies, amplitudes, and linewidths of more than 250,000 acoustic resonances of the sun from data sets lasting 36 days. The frequency resolution of a single data set is 0.321 microhertz. For frequencies averaged over the azimuthal order m, the median formal error is 0.044 microhertz, and the associated median fractional error is 1.6 x 10(-5). For a 3-year data set, the fractional error is expected to be 3 x 10(-6). The GONG m-averaged frequency measurements differ from other helioseismic data sets by 0.03 to 0.08 microhertz. The differences arise from a combination of systematic errors, random errors, and possible changes in solar structure.     

Biogeochemical Controls and Feedbacks on Ocean Primary Production

Changes in oceanic primary production, linked to changes in the network of global biogeochemical cycles, have profoundly influenced the geochemistry of Earth for over 3 billion years. In the contemporary ocean, photosynthetic carbon fixation by marine phytoplankton leads to formation of approximately 45 gigatons of organic carbon per annum, of which 16 gigatons are exported to the ocean interior. Changes in the magnitude of total and export production can strongly influence atmospheric CO2 levels (and hence climate) on geological time scales, as well as set upper bounds for sustainable fisheries harvest. The two fluxes are critically dependent on geophysical processes that determine mixed-layer depth, nutrient fluxes to and within the ocean, and food-web structure. Because the average turnover time of phytoplankton carbon in the ocean is on the order of a week or less, total and export production are extremely sensitive to external forcing and consequently are seldom in steady state. Elucidating the biogeochemical controls and feedbacks on primary production is essential to understanding how oceanic biota responded to and affected natural climatic variability in the geological past, and will respond to anthropogenically influenced changes in coming decades. One of the most crucial feedbacks results from changes in radiative forcing on the hydrological cycle, which influences the aeolian iron flux and, in turn, affects nitrogen fixation and primary production in the oceans.     

Impact of co-infection with Lepeophtheirus salmonis and Moritella viscosa on inflammatory and immune responses of Atlantic salmon (Salmo salar)

This study was conducted to determine the effects of a co-infection with Moritella viscosa at different exposure levels of sea lice Lepeophtheirus salmonis in Atlantic salmon (Salmo salar). M. viscosa (1.14 × 10⁶ cfu/ml) was introduced to all experimental tanks at 10 days post-lice infection (dpLs). Mean lice counts decreased over time in both the medium lice co-infection (31.5 ± 19.0 at 7 dpLs; 16.9 ± 9.3 at 46 dpLs) and high lice co-infection (62.0 ± 10.8 at 7 dpLs; 37.6 ± 11.3 at 46 dpLs). There were significantly higher mortalities and more severe skin lesions in the high lice co-infected group compared to medium lice co-infected group or M. viscosa-only infection. Quantitative gene expression analysis detected a significant upregulation of genes in skin from the high lice co-infection group consistent with severe inflammation (il-8, mmp-9, hep, saa). Skin lesions retrieved throughout the study were positive for M. viscosa growth, but these were rarely located in regions associated with lice. These results suggest that while M. viscosa infection itself may induce skin lesion development in salmon, co-infection with high numbers of lice can enhance this impact and significantly reduce the ability of these lesions to resolve, resulting in increased mortality.     

Prevalence of thermophilic Campylobacter species in cats and dogs in two animal shelters in Ireland

Rectal swabs or faecal samples for the isolation of Campylobacter species were taken from 120 dogs and cats in an animal shelter in which only one kitten showed signs of gastrointestinal disease, and rectal swabs were taken from 46 dogs, 22 of which showed signs of gastrointestinal disease, in another shelter. At the first shelter, the swabs from 24 of 47 dogs (51.1 per cent) and 36 of 48 cats (75 per cent) yielded a Campylobacter species. The rate of isolation was significantly higher from dogs and cats less than six months old, and significantly higher from cats than from dogs (P< or =0.05). At the second shelter Campylobacter species were isolated from 40 of 46 dogs (87 per cent), but there was no significant difference between the age groups. Campylobacter species were isolated from 19 (86.4 per cent) of the 22 dogs with signs of gastrointestinal disease and from 21 (87.5 per cent) of the 24 unaffected dogs. Several culture methods were applied to the samples collected from both shelters, and the combination significantly increased the recovery of Campylobacter species.     

ACCURACY OF POSITIONING THE CERVICAL SPINE FOR RADIATION THERAPY AND THE RELATIONSHIP TO GTV, CTV AND PTV

The purpose of the study was to evaluate the accuracy and precision of a rigid positioning device for repositioning the cervical spine accurately and precisely during conformal radiation therapy of dogs. Fifteen purpose bred research dogs in a radiation therapy study were included. The dogs were positioned using a head holder and a deflatable pillow attached to the treatment table. Port films were reviewed retrospectively, and repositioning precision was recorded by measurements in three orthogonal planes of the head, 2nd cervical vertebra and 1st thoracic spinous process. Mean treatment position was compared to the planning position for a measurement of systematic set-up error. Mean interfraction position variation of the 2nd cervical vertebra was 0.2, 0.1 and 0.2 cm for the ventrodorsal, caudocranial and laterolateral directions respectively, and the average systematic set up error was 0.2, 0.1 and 0.2 cm for the ventrodorsal, caudocranial and laterolateral directions respectively. Knowledge of the magnitude of reposition errors should be included when determining the margins around the tumor.     

Factors affecting pregnancy rate in Holstein-Friesian cattle mated during summer in a tropical upland environment

SUMMARY The relationships between some environmental factors and reproductive rates of dairy cattle during summer in a tropical upland area were studied using records for Holstein-Frieslan milking cows and non-lactating growing helfers maintained at the Kalri Research Station on the Atherton Tableland in north Queensland. The Station is situated in a tropical upland environment with warm, wet summers and dry, cool winters. Data were collected over a 12-year-period (1977 to 1988) for cows grazing nitrogen (N)-fertilised grass pastures and receiving either no supplement or about 3.5 kg molasses/cow/day. Cattle were mated over a 10-week period starting from mid-January to early February, with 32 to 36 cows and 5 to 42 heifers used in each year. There was considerable variation among years in the pregnancy rate after 3 Inseminations, with a low of 39% and a high of 94% pregnancy. This variation from year to year was reduced for cows grazing pastures receiving 300 kg N/ha/yr after molasses feeding commenced in 1984–85. Pregnancy rates after molasses Introduction were higher for cows grazing pastures receiving 300 compared with 100 kg N/ha/yr. Pregnancy rate in cows and heifers was reduced from 80 to 55% as mean daily maximum temperature increased from 26°C to 27.5°C. At mean maximum temperatures above 27°C for cows and 27.6°C for heifers pregnancy rates to 3 Inseminations were consistently below 60%. Much of the year to year variation in pregnancy rate was related to rainfall during the mating period. There was a positive association between pregnancy rate and rainfall up to 1000 mm, and this was associated with differences in growth rate of pasture. In years of very high rainfall, above 1500 mm, there was a depression in pregnancy rate, which may be related to the intense humidity in very wet years causing heat stress in cows and associated problems such as feet infections, or a deterioration in pasture quality. We conclude that much of the variation in pregnancy rate during summer may have been related to heat stress and the level of feed supply in the form of pasture and supplements.     

Management and prevention of vitamin D deficiency rickets in captive-born juvenile chimpanzees (Pan troglodytes).

Vitamin D deficiency rickets was diagnosed in three juvenile chimpanzees (Pan troglodytes) raised indoors under skylights and consuming only breast milk. Two cases detected early had mild but characteristic radiographic changes. More advanced disease presented with florid x-ray features of rickets and pathologic fractures, as well as hypocalcemia, hypophosphatemia, and low serum 25-hydroxyvitamin D levels. Treatment by a single injection of vitamin D2 in sesame oil (slow release) followed by daily oral supplementation with vitamin D2 corrected the condition. On the basis of experience with these cases and comparison with rickets in humans, a prevention protocol for mother-reared, inside-housed, chimpanzee juveniles was developed. Injection with slow release vitamin D2 (5,000 IU i.m. once) at 4 mo of age, followed by oral supplementation of 400 IU vitamin D2 daily until weaning, prevents rickets in juvenile chimpanzees raised indoors.     

Neuroendocrine,Metabolic and Genomic Cues Signalling the Onset of Puberty in Females

Puberty is the result of a dynamic interaction between genetic factors and environmental cues, all of which lead to the attainment of reproductive capacity. Thus, significant changes in hormone secretion occur from the pre‐pubertal to the pubertal stage. The objective of this review is to provide an update of some endocrine, physiological, metabolic and genetic concepts involved in the establishment of the hypothalamic‐hypophyseal‐gonadal axis function promoting the onset of the reproductive function during puberty. To achieve this purpose, basic aspects of the function of the hypothalamic‐hypophyseal‐gonadal axis, the control of the axis by neurotransmitters and the interaction between reproductive function and metabolic status will be considered. Finally, the role of the novel kisspeptin system and the GPR54 receptor as modulators of puberty will be considered, in addition to the hierarchical expression of the main genes acting as regulators of the onset of puberty.