Progress in Mapping and Cloning Qualitative and Quantitative Resistance Against <Emphasis Type="Italic">Phytophthora infestans</Emphasis> in Potato and Its Wild Relatives

Cultivated potato is susceptible to many pests and pathogens, none of which is more of a threat to potato agriculture than the late blight disease, caused by the oomycete Phytophthora infestans (Mont.) de Bary. To date all efforts to thwart this most adaptive of pathogens have failed, and early attempts to deploy ‘R genes’ introgressed from the wild Mexican hexaploid Solanum demissum ended in abject failure. With the advent of facile gene mapping and cloning, allied to knowledge of plant resistance gene structure, renewed efforts are leading to mapping and isolation of new sources of late blight resistance in potato wild species, many of which are being performed under the auspices of the BIOEXPLOIT project (Sub-project 2). We document recent advances in late blight resistance gene mapping and isolation, and postulate how these genes, allied to knowledge of pathogen effectors and their recognition specificity, may greatly enhance our chances of halting the progress of late blight disease in potato crops worldwide.     

Heavy metal contamination of soils in Northern Slovakia

Environmental damages like forest decline in Northern Slovakia could be a result of long-distance transport of pollutants with the dominating north-west winds. On 10 sites, primarily in the northbound upper slopes of west-east oriented mountain ranges in Northern Slovakia, the extent of the heavy metal contamination in soils along a north-south transect was examined. Oi, Oe, Oa, A, and B horizons were sampled and the total concentrations of Al, Cd, Cr, Cu, Fe, Mn, Ni, Pb, and Zn were determined. The ranges of heavy metal concentrations in the forest floor were higher than reported for comparable samples from Bavarian soils except for Zn (Cd: 0.65–1.77; Cr: 12–40; Cu: 19–41; Ni: 8–24; Pb: 70–187; Zn: 31–92 mg kg^?1), in the mineral soil the concentrations were lower. The depth distribution of the metal concentrations indicated a contamination with Cd, Cr, Cu, Ni, Pb, and Zn. The concentration differences between forest floor and mineral soil tended to be higher at the northern than at the southern sites for Cu, Ni, Pb, and Zn, indicating a long-distance transport from the north. Correlation and principal component analyses of the total metal concentrations revealed three groups: Cu, Pb, and Zn inputs mainly seemed to result from long-distance transport from the north, Cr and Ni inputs additionally from local sources. Cd probably had its origin mainly in local sources. This result was further confirmed by the grouping of the sites when clustered.     

Classification of German white wines with certified brand of origin by multielement quantitation and pattern recognition techniques

A procedure is proposed for the determination of the authenticity of white wines from four German wine-growing regions (Baden, Rheingau, Rheinhessen, and Pfalz) based on their content of some major, trace, and ultratrace elements. One hundred and twenty-seven white wine samples possessing a certificate of origin, all of the 2000 vintage, were analyzed. The concentrations of 13 elements (Li, B, Mg, Ca, V, Mn, Co, Fe, Zn, Rb, Sr, Cs, and Pb) were determined in wine diluted 1:20 by sector field inductively coupled plasma mass spectrometry (SF-ICP-MS). Indium was routinely used as internal standard. Supervised pattern recognition techniques such as discriminant analysis and classification trees were applied for the interpretation of the data. A quadratic discriminant analysis (QDA) allowed the four regions to be discriminated with 83% accuracy when using only eight variables (Li, B, Mg, Fe, Zn, Sr, Cs, and Pb), and the prediction ability for classifying new samples was 76%. By use of a second method, a decision tree, the classification of samples coming from the four regions could be performed with an accuracy of 84% when only four elements were used: Li (very low in samples from Baden), Zn (abnormally low in the samples from the Rheingau), and Mg and Sr (both important for the differentiation between Pfalz and Rheinhessen samples). For this method, the prediction ability was only 74% in the identification of unknown samples. The robustness of the QDA model was not good enough, and therefore the tree is better recommended for the classification of new wine samples from these areas of German wine production.     

Innate response activator B cells protect against microbial sepsis

Recognition and clearance of a bacterial infection are a fundamental properties of innate immunity. Here, we describe an effector B cell population that protects against microbial sepsis. Innate response activator (IRA) B cells are phenotypically and functionally distinct, develop and diverge from B1a B cells, depend on pattern-recognition receptors, and produce granulocyte-macrophage colony-stimulating factor. Specific deletion of IRA B cell activity impairs bacterial clearance, elicits a cytokine storm, and precipitates septic shock. These observations enrich our understanding of innate immunity, position IRA B cells as gatekeepers of bacterial infection, and identify new treatment avenues for infectious diseases.     

Characterization of some Allium hybrids by aroma precursors, aroma profiles, and alliinase activity

Various Allium hybrids, obtained by the crossbreeding of Allium cepa (onion) as the mother plant and six taxonomically distant wild species obtained by embryo rescue, were investigated with special respect to their individual profiles of cysteine sulfoxides as well as enzymically and nonenzymically formed aroma substances. Alliinase (EC 4.4.1.4) catalyzes the conversion of odorless (+)-S-alk(en)yl-L-cysteine sulfoxides into volatile thiosulfinates. These thiosulfinates were converted to a variety of sulfides by steam distillation. SPME-gas chromatography (GC) and high-performance liquid chromatography (HPLC) used for the analysis of aroma components and their precursors permitted a high sample throughput, so that numerous gene bank accessions and Allium breeding materials were analyzed within a comparatively short time. Cysteine sulfoxides as well as alliinase activity were found in all investigated samples at different levels, but (+)-S-methyl-L-cysteine sulfoxide (methiin) was the most abundant sulfoxide present. (+)-S-(trans-1-Propenyl)-L-cysteine sulfoxide (isoalliin) is typical for onion and was found in all investigated hybrids. The pattern of the other cysteine sulfoxides depended strongly on the parent plants used. The profile of aroma components corresponded with the related pattern of aroma precursors (cysteine sulfoxides). Successful hybridization was proven by randomly amplified polymorphic DNA analysis. Together with these established marker techniques, HPLC and SPME-GC analysis provide support to breeding projects designed to improve the health and aroma properties of Allium hybrids.     

Finite element modelling of the canine and feline outer ear canal: benefits for local drug delivery?

Current therapeutic regimes of outer ear infections in dogs and cats aim at the application of efficient local therapeutics after cleaning of the acoustic meatus. One so far insufficiently answered question is if the local application of these substances results in an individually suitable drug concentration in the external ear canal. Thus, the purpose of the present study was to develop a finite element model to calculate the values of the different areas of the external acoustic meatus in dogs and cats in order to provide a tool for the benefit of an appropriate local drug dosage determination. A 3D finite element model (FEM), based on computer tomographic (CT) data sets of four dogs and two cats, was generated to determine areas and volumes of the outer ear canal. Furthermore, various ear therapeutics and cleansers were tested concerning their optimal distribution on 5 cm2 dog and cat skin. The data shows major variations of the area values of the external auditory canal in case of the different dogs but not in the examined cats. These results suggest that manufacturer's recommendations of the pharmaceuticals might be insufficient in terms of achieving an optimal drug concentration in the outer ear canal especially in larger dogs. In conclusion, the developed finite element model has shown to be suitable to calculate areas of the outer ear canal in cats and dogs and could be of help in context with the definition of optimal drug concentrations for a local drug delivery.     

Will changes in root-zone temperature in boreal spring affect recovery of photosynthesis in Picea mariana and Populus tremuloides in a future climate?

Future climate will alter the soil cover of mosses and snow depths in the boreal forests of eastern Canada. In field manipulation experiments, we assessed the effects of varying moss and snow depths on the physiology of black spruce (Picea -mariana (Mill.) B.S.P.) and trembling aspen (Populus tremuloides Michx.) in the boreal black spruce forest of western Québec. For 1 year, naturally regenerated 10-year-old spruce and aspen were grown with one of the following treatments: additional N fertilization, addition of sphagnum moss cover, removal of mosses, delayed soil thawing through snow and hay addition, or accelerated soil thawing through springtime snow removal. Treatments that involved the addition of insulating moss or snow in the spring caused lower soil temperature, while removing moss and snow in the spring caused elevated soil temperature and thus had a warming effect. Soil warming treatments were associated with greater temperature variability. Additional soil cover, whether moss or snow, increased the rate of photosynthetic recovery in the spring. Moss and snow removal, on the other hand, had the opposite effect and lowered photosynthetic activity, especially in spruce. Maximal electron transport rate (ETR(max)) was, for spruce, 39.5% lower after moss removal than with moss addition, and 16.3% lower with accelerated thawing than with delayed thawing. Impaired photosynthetic recovery in the absence of insulating moss or snow covers was associated with lower foliar N concentrations. Both species were affected in that way, but trembling aspen generally reacted less strongly to all treatments. Our results indicate that a clear negative response of black spruce to changes in root-zone temperature should be anticipated in a future climate. Reduced moss cover and snow depth could adversely affect the photosynthetic capacities of black spruce, while having only minor effects on trembling aspen.     

Element content and pH value in American black cherry (<Emphasis Type="Italic">Prunus serotina</Emphasis>) with regard to colour changes during heartwood formation and hot water treatment

Element content and pH value in wood tissues of veneer grade logs of P. serotina Ehrh. were investigated with regard to wood colour variations, measured in the CIEL*a*b* system. The average pH value of heartwood tissue was about pH 4.0 and medium colour parameters of veneer sheets were determined at L* = 73, a* = 9.8, and b* = 23.5. Optical emission spectroscopy (ICP-OES) analyses showed differences in the element contents between two regional forest sites coming from Pennsylvania and West Virginia, USA, respectively. The latter is mainly characterised by higher variations of micro-element content in the transition zone (influencing heartwood formation) and also pH value of wood tissue, which contributes to higher variations in colour response of industrially produced veneer sheets. Investigations under industrial conditions underline the correlation between length and intensity of heat treatment in veneer production and colour development: with increasing duration and temperature of hot water treatment, veneer surfaces become darker and wood colour is intensified (ΔL = 3.6, Δa = 2.1, comparing 12 and 72 h of hot water treatment at 60°C). However, no equalisation of wood colour was achieved by modifying the treatment conditions. Artificial radiation by UV–visible light, quickly and extensively darkens and intensifies wood colour (ΔL = 16, Δa = 3.5, and Δb = 4.0 after 15 h of artificial radiation), but variations in wood colour deriving from different treatment conditions during veneer production, were not reduced.