Acid phosphomonoesterase (E.C. 3.1.3.2) location in soil

Acid phosphomonoesterase (APM) (E.C. 3.1.3.2) in soil is either of plant‐root or microbial origin. Each of these sources may be dominant in certain ecosystems. Generally, extracellular APM in soil has been reported. However, the lack of suitable methods limits investigations of APM in soil. Root‐derived APM comes from intact plant roots, root exudates, root apoplastic sap, root extracts, or mycorrhizal fungi. The significance of these sources of APM is discussed in this review being the highest in intact roots or root extracts, and within wall‐ and membrane‐bound fraction of mycorrhizal fungi. Evaluation of the location of APM has been based on extraction of fractions of APM with different types of extractants. The suitability of individual extractants and lack of these procedures as well as the need to search for other suitable solutions to increase extraction efficiency, minimalize extraction of inhibitors and solubilization of organic compounds are discussed. As APM derived from roots and soil microorganisms show different kinetic properties, and differ in their response to environmental factors, determination of the significance of root and microbial APM within ecosystems requires further research aimed at evaluating the response of P transformation to climatic and other environmental changes.     

Human land use and patterns of parasitism in tropical amphibian hosts

Landscape alterations by humans can change patterns of parasite transmission. Depending on the type alteration and the life histories of parasites and hosts, parasitism may increase or decrease. To investigate whether parasitism in tropical amphibians was associated with land use change, I studied three species of amphibians, Rana vaillanti, Eleutherodactylus fitzingeri, and Smilisca puma from the Province of Heredia, Costa Rica, in the Atlantic lowlands. Frogs were collected and examined for parasites during the rainy seasons of 2001-2003 from sites in forest or clear-cut cattle pastures. The abundances of five species of parasites and parasite species richness of R. vaillanti were significantly higher in pasture habitat. A single parasite species shared by E. fitzingeri and S. puma showed a trend of increased abundance in pasture habitats. Overall, the abundances of six parasite species (three trematodes, an intestinal nematode, an encysted nematode, and a filarial nematode) were higher in pastures, while two species (trematodes) were higher in forest. This study suggests that land use activities in tropical regions affects the abundance and richness of amphibian parasites. Converting forest to pasture may impact the abundance of amphibian parasites because subsequent water quality changes (e.g. eutrophication, higher pH) often enhance habitat and resources for intermediate hosts (e.g. snails, mosquitoes) involved in parasite life cycles. Aquatic amphibians (e.g. R. vaillanti) may be particularly prone to experiencing increases in parasitism in agricultural habitats due to the positive relationship between many aquatic intermediate hosts and water quality changes associated with agricultural land use.     

A photoinduced persistent structural transformation of the special pair of a bacterial reaction center

Structural modification of photosynthetic reaction centers is an important approach for understanding their charge-separation processes. An unprecedented persistent structural transformation of the special pair (dimer) of bacteriochlorophyll molecules can be produced by light absorption alone. The nonphotochemical hole-burned spectra for the reaction center of Rhodopseudomonas viridis show that the phototransformation leads to a red shift of 150 wave numbers for the special pair's lowest energy absorption band, P960, and a comparable blue shift for a state at 850 nanometers, which can now be definitively assigned as being most closely associated with the upper dimer component. Additional insights on excited-state electronic structure include the identification of a new state.     

Cell corpse engulfment mediated by C. elegans phosphatidylserine receptor through CED-5 and CED-12

During apoptosis, phosphatidylserine, which is normally restricted to the inner leaflet of the plasma membrane, is exposed on the surface of apoptotic cells and has been suggested to act as an "eat-me" signal to trigger phagocytosis. It is unclear how phagocytes recognize phosphatidylserine. Recently, a putative phosphatidylserine receptor (PSR) was identified and proposed to mediate recognition of phosphatidylserine and phagocytosis. We report that psr-1, the Caenorhabditis elegans homolog of PSR, is important for cell corpse engulfment. In vitro PSR-1 binds preferentially phosphatidylserine or cells with exposed phosphatidylserine. In C. elegans, PSR-1 acts in the same cell corpse engulfment pathway mediated by intracellular signaling molecules CED-2 (homologous to the human CrkII protein), CED-5 (DOCK180), CED-10 (Rac GTPase), and CED-12 (ELMO), possibly through direct interaction with CED-5 and CED-12. Our findings suggest that PSR-1 is likely an upstream receptor for the signaling pathway containing CED-2, CED-5, CED-10, and CED-12 proteins and plays an important role in recognizing phosphatidylserine during phagocytosis.     

The influence of fermentation processes and cereal grains in wholegrain bread on reducing phytate content

Wholegrain bread is generally thought of as being more healthy than white bread due to it having a higher content of dietary fibre, vitamins (especially vitamin B and E) and many important minerals. However, wholegrain bread also contains high levels of phytate (myo-inositolhexakisphosphate, InsP-6) which may bind desirable nutrients, preventing their absorption in the gut and thereby reducing the nutritional value of the end product. In order to evaluate factors influencing phytate levels, the effects of fermentation and selected wholemeal flours from rye, oats and wheat were investigated. Phytate levels were assessed using a spectrophotometric assay based on the measurement of iron with 2,2′-bipyridine. Phytate decreased in freshly ground wholegrain flour dough during the fermentation process with time of fermentation being the most important factor. Fermentation temperature was found to make only a small difference to the process of phytate reduction. Since the potential benefits of wholemeal breads incorporating various grains (e.g. oats and rye) are increasingly evident, this research has important implications for human health.     

Intramolecular Modulation of Serine Protease Inhibitor Activity in a Marine Cyanobacterium with Antifeedant Properties

Extracts of the Floridian marine cyanobacterium Lyngbya cf. confervoides were found to deter feeding by reef fish and sea urchins (Diadema antillarum). This antifeedant activity may be a reflection of the secondary metabolite content, known to be comprised of many serine protease inhibitors. Further chemical and NMR spectroscopic investigation led us to isolate and structurally characterize a new serine protease inhibitor 1 that is formally derived from an intramolecular condensation of largamide D (2). The cyclization resulted in diminished activity, but to different extents against two serine proteases tested. This finding suggests that cyanobacteria can endogenously modulate the activity of their protease inhibitors.     

Tilapia recirculating aquaculture systems as a source of plant growth promoting bacteria

A recirculating aquaculture system with farmed tilapia is the most popular combination in aquaponics, an integration of aquaculture and hydroponics. Despite nutrient‐rich fish‐rearing water being regarded as a valuable resource for aquaponics, the quality and value of inhabitant microorganisms are certainly understudied. Our present research illustrates the feasibility of the tilapia‐rearing water as a valuable source of beneficial microorganisms called plant growth promoting bacteria (PGPB). Microbial communities were examined with a combination of culture‐independent high‐throughput 16S rRNA gene sequencing and cultivation methods. Microbial communities determined using high‐throughput sequencing indicated the usefulness of Bacteroidetes and Alphaproteobacteria as beneficial microbial indicators to assess the health condition of recirculating aquaculture systems. Siderophore production, ammonia production and phosphate solubilization assays were used for screening and 41% of isolates were identified as plant growth promoting bacteria. These bacteria were classified as Actinobacteria (eight strains [32% in total], Dietzia, Gordonia, Microbacterium, Mycobacterium and Rhodococcus), Bacilli (six strains [24%], Bacillus and Paenibacillus), Flavobacteriia (one strain [4%], Myroides), Betaproteobacteria (two strains [8%], Acidovorax and Chromobacterium) and Gammaproteobacteria (eight strains [32%], Aeromonas, Plesiomonas and Pseudomonas). We found that the tilapia‐rearing water naturally contained various lineages of PGPB and could be esteemed as a worthy seed bank of PGPB. Because aquaponics is a difficult system to use pesticides and herbicides, the role of PGPB to prevent plant pathogens and maintain healthy root system may be more important than traditional agricultural settings.     

Nitrogen release from different polymer-coated urea fertilizers in soil is affected by soil properties

The use of urea as nitrogen (N) fertilizer in agriculture needs to consider environmental, economic and resource conservation aspects because of low N-use efficiency (NUE). Polymer-coated urea (PCU) offers an effective way to improve the NUE of urea and to reduce its environmental trade-offs. However, we lack information on the impact of climate and soil properties on N release from PCU. Therefore, this study was performed to quantify the effects of soil texture, moisture and temperature on the release kinetics of N from PCU. We designed a test system for soil incubation experiments and investigated three fertilizers with different release patterns, five topsoils, three moisture levels and two temperatures over 48 days. We analysed the concentrations of inorganic N (${\mathrm{NH}}_4^{+}-\mathrm{N}$ and ${\mathrm{NO}}_3^{-}-\mathrm{N}$) in the soil and estimated N release rates using the unified Richards model. Soil texture did not change the N release patterns, but release rates varied significantly among the investigated soils. Changes in soil moisture for a given soil had no effect on N release from PCU and urea when fertilizers were incorporated into the soil at conditions supportive of crop growth. Lowering soil temperatures, however, decreased N release rates from PCU by 16%–49% but only in silt loam and not in sandy loam. We conclude that PCU improves the N residence time in soil, but predictions on N release from PCU must be adapted to the prevailing environmental conditions and cannot be generalized across differently textured soils.