Fetal and adult hematopoietic stem cells give rise to distinct T cell lineages in humans

Although the mammalian immune system is generally thought to develop in a linear fashion, findings in avian and murine species argue instead for the developmentally ordered appearance (or "layering") of distinct hematopoietic stem cells (HSCs) that give rise to distinct lymphocyte lineages at different stages of development. Here we provide evidence of an analogous layered immune system in humans. Our results suggest that fetal and adult T cells are distinct populations that arise from different populations of HSCs that are present at different stages of development. We also provide evidence that the fetal T cell lineage is biased toward immune tolerance. These observations offer a mechanistic explanation for the tolerogenic properties of the developing fetus and for variable degrees of immune responsiveness at birth.     

Conversion of native forest to exotic Pinus radiata plantation: Response of understorey plant composition using a plant functional trait approach

This study aimed to determine the response of native plant species to changed growing conditions, especially increased shade, following establishment of exotic Pinus radiata plantation on cleared native eucalypt forest. In the Northern Hemisphere, species tolerant to shading are typically herbaceous perennials, with large seeds, no obvious mechanism of seed dispersal, and spread by clonal means. We investigated whether life form, mode of seed dispersal, leaf area, specific leaf area (SLA), nutrient uptake strategy, seed mass, fire response, plant height, and clonal spread differed between understorey species of pine plantation and native forest. Further, we asked whether plant functional traits that confer tolerance to stress through shading differ from those in other floras. The study was conducted on the Delatite Peninsula in north-eastern Victoria, Australia. Vegetation of adjacent native forest and pine plantation were surveyed using eight 7 m × 7 m plots per site, randomly located within five paired sites. Differences in plant traits between land-use types were tested by Non-metric Multi-dimensional Scaling (NMDS), analysis of similarity (ANOSIM) and paired t-tests. Cluster analysis of the nine plant traits was used to define emergent groups, with differences between land-use types examined by ANOSIM and indicator species analysis. There was a significant change in the composition of understorey vegetation following conversion to pine plantation that included a decline in the richness of native species. NMDS of plant attributes showed a clear separation of native forest from pine plantation with land use strongly correlated in ordination space (r² = 0.611). Cluster analysis produced seven emergent groups of plant functional traits for 78 identified plant species. Phanerophytes split into two groups (myrmecochorous trees and shrubs; myrmecochorous shrubs), perennial herbs into four groups (upright herbs, myrmecochorous herbs, barochorous herbs, flat rosette herbs) with one group representing therophytes and anemochorous perennials. Perennial herbs with intermediate SLA and clonal spread were tolerant of the shaded conditions in pine plantation while the two groups of phanerophytes and the myrmecochorous herbs were largely excluded. Shared traits of excluded emergent groups included those that provided an over-riding adaptation to mineral nutrient stress, including myrmecochory, low SLA, ectomycorrhizal and ericoid mycorrhizal associations and N₂-fixation. These plant traits could not provide tolerance to stress through shading, which is better explained by the open canopied nature of the native forest.     

Correlates of lake use by breeding common scoters in Scotland

1. Many populations of sea‐ducks, which typically winter at sea but breed on fresh water, are declining. Numbers of common scoters Melanitta nigra (L.) breeding in Scotland halved between 1995 and 2007, despite most breeding sites having special conservation status. To identify potential conservation measures, a 3‐year study was conducted, investigating correlates of lake use by scoters. 2. At 26 scoter breeding lakes, food abundance (macroinvertebrates) and foraging habitats (substrates, water depth) were measured, and their associations with scoter lake use explored using multi‐model inference. Correlates of macroinvertebrate abundance (water quality, fish abundance) were also investigated. 3. Averaged over 3 years (2009–2011), these lakes held 26.7 (SE 6.3) females, around half the Scottish breeding population. Scoters occurred more often at lakes having abundant large‐bodied invertebrates and extensive shallow water. Lakes where the average weight of the largest invertebrate in each sample exceeded 4 mg had 9.2 times (females) or 27 times (broods) more scoter records than other lakes. Lakes where water depths (10 m from the shore) averaged less than 1.3 m had 2.5 times (females) or 12 times (broods) more scoter records than other lakes. 4. The abundance of large‐bodied invertebrates was greater where small fish species (mostly three‐spined sticklebacks Gasterosteus aculeatus) were more common and brown trout Salmo trutta were scarcer. 5. Results suggest two approaches to scoter conservation. At lakes used for hydro‐electricity generation, water level regimes that provide extensive shallow water should be tested to see if these benefit scoters. At lakes used for trout fishing, trout reduction by increased angling should be trialled, to see if this increases large‐invertebrate abundance and scoter use. Copyright © 2015 John Wiley & Sons, Ltd.     

Linking nest histories,remotely sensed land use data and wildlife crime records to explore the impact of grouse moor management on peregrine falcon populations

Wildlife crime can be difficult to quantify, and its true impact on populations can be underestimated if rates are under-recorded. The illegal killing of birds of prey is an important form of wildlife crime, which in the UK, is often associated with land managed for the recreational shooting of red grouse Lagopus lagopus scoticus. In the UK, increases in peregrine falcons Falco peregrinus following recovery from organo-chlorine pesticides have not been uniform, with slow growth and localised declines in some areas, including those managed for red grouse shooting. In this study, we combined 1081 peregrine nest histories across northern England between 1980 and 2006 with a remotely sensed map of grouse moor management, to test whether breeding performance was lower in areas with active management for grouse shooting. Productivity of pairs on grouse moors was 50% lower than pairs breeding on non-grouse moor habitat. However, clutch size and brood size of successful nests did not differ between habitat types, suggesting that food constraints were unlikely to explain this difference. Population models suggested source-sink dynamics, with populations on grouse moors unable to sustain themselves without immigration. Population data confirmed that growth rates were indeed lower on grouse moors than on non-grouse moor sites. Analysis of wildlife crime data confirmed that persecution of the species was more frequent on grouse moors than in other habitat types. This population will be more secure, and better able to function as a barometer of environmental health and climate change, if illegal persecution of the species ceases on areas of land managed for grouse shooting.     

Populations and production of fat-tailed and fat-rumped sheep in the Horn of Africa

The six countries comprising the Horn of Africa are Djibouti, Eritrea, Ethiopia, Kenya, Sudan and Somalia. Together, they cover an area of just under 5 million square kilometres and support a human population of 17.7 million at an average density of 38.15 people per square kilometre (although in the purely pastoral areas population density is probably of the order of 15–16 people per square kilometre). The Horn is a major repository of domestic animal biodiversity and genetic resources and is home to 15 million one-humped camels, 110 million cattle, 94 million goats and 102 million sheep. A list of 72 sheep “breeds” of which 23 can be considered fat-tailed or fat-rumped has been compiled for the area, although many of these are merely subtypes of a larger grouping and several are not native to the Horn. This paper provides information, where such is available, on the distribution, numbers and production parameters of the fat-tailed and fat-rumped sheep that occupy the Horn.     

Dynamics of large woody debris in small streams disturbed by the 2001 Dogrib fire in the Alberta foothills

We investigated the temporal dynamics of large woody debris (LWD) in five headwater streams before and after the 2001 Dogrib fire in the foothills of Alberta. The density of LWD varied from 5 to 41 logs per 50 m of stream reach and accounted for 19.4 ± 5.1 m³ ha⁻¹ (mean ± standard error) of wood in the riparian zones and 114.1 ± 30.1 m³ ha⁻¹ of wood in the bankfull margins of the stream channel. Individual logs averaged 18.9 ± 1.15 cm in diameter, 5.5 ± 0.7 m in length, and 0.2 ± 0.02 m³ in volume. Logs became significantly shorter in decay classes II–IV. Bridges were longer than partial bridges, which were longer than loose and buried LWD. Individual log volume was greatest for bridges, but not significantly different among other position classes. Bridges and loose LWD contributed little to stream morphology and function; however, 55% of partial bridges and all buried logs contributed to sediment storage, channel armouring, or riffles and pools in the stream channel.