Molecular changes associated with adaptation of equine influenza H3N8 virus in embryonated chicken eggs

Embryonated chicken eggs (ECEs) are routinely used to isolate equine influenza virus. Propagation of the virus in ECEs results in selection of variants. In the present study, we determined nucleotide sequences of entire coding regions of parent A/equine/Tottori/1/07 (H3N8) and its derivatives that have different passage histories in ECE. After 12 passages, nucleotide sequence analysis predicted 3 amino acid substitutions in hemagglutinin (HA; 2 in HA1 and 1 in HA2). The two amino acid substitutions in HA1 were located in the vicinity of the cell receptor-binding site. Three other amino acid substitutions were predicted in internal proteins, 1 in the M1, 1 in the NP and 1 in the PA. This is the first report showing mutations in the internal protein genes of equine influenza virus associated with adaptation to ECE.     

Establishment of a quantitative ELISA for the measurement of allergen-specific IgE in dogs using anti-IgE antibody cross-reactive to mouse and dog IgE

As IgE plays a pivotal role in type I hypersensitivity-mediated allergic diseases, it is valuable to measure absolute quantity of serum antigen-specific IgE for clinical and research purposes. Here we describe a novel ELISA system that enables quantification of antigen-specific IgE in ng/ml in dogs. A newly developed monoclonal antibody (CRE-DM) was shown to recognize canine and mouse IgE equally in a dose dependent manner, but it did not recognize canine IgG. The reactivity of CRE-DM to canine IgE was also confirmed by an inhibition ELISA using canine IgE as an inhibitor and the maximum inhibition rate was 91.3%. In order to know whether canine IgE specific to an allergen could be quantitatively measured with an ELISA using CRE-DM, we established a quantitative ELISA that could measure canine IgE recognizing Cry j 1, one of the major allergens of Japanese cedar pollen. In this ELISA, a standard curve was created by using concentration-predetermined Cry j 1-specific monoclonal mouse IgE. According to the standard curve, the concentration of Cry j 1-specific IgE in dogs that were experimentally sensitized to Japanese cedar pollen could be calculated and determined in ng/ml. The specificity of the Cry j 1-specific IgE ELISA using CRE-DM was also confirmed by inhibition ELISA using canine IgE as an inhibitor and the inhibition rate was 97.0%. Reproducibility of the ELISA in three independent assays was determined using groups of pooled canine sera whose Cry j 1-IgE titers ranged from 155.9 to 888.2 ng/ml. Intra- and inter-assay reproducibility was determined with coefficient of variation ranging between 3.1-5.2% and 2.2-8.0%, respectively. These results demonstrated that the ELISA utilizing CRE-DM was a specific, reliable and robust new laboratory test that could quantify absolute amount of antigen-specific IgE in canine serum. The ELISA will serve as a useful tool in the clinics to evaluate the change of serum IgE titers during anti-allergic treatments as well as during seasonal fluctuation of allergen exposure.     

Inferring phenotypic causal structure among farrowing and weaning traits in pigs

Direct selection for litter size or weight at weaning in pigs is often hindered by external interventions such as cross‐fostering. The objective of this study was to infer the causal structure among phenotypes of reproductive traits in pigs to enable subsequent direct selection for these traits. Examined traits included: number born alive (NBA), litter size on day 21 (LS21), and litter weight on day 21 (LW21). The study included 6,240 litters from 1,673 Landrace dams and 5,393 litters from 1,484 Large White dams. The inductive causation (IC) algorithm was used to infer the causal structure, which was then fitted to a structural equation model (SEM) to estimate causal coefficients and genetic parameters. Based on the IC algorithm and temporal and biological information, the causal structure among traits was identified as: NBA → LS21 → LW21 and NBA → LW21. Owing to the causal effect of NBA on LS21 and LW21, the genetic, permanent environmental, and residual variances of LS21 and LW21were much lower in the SEM than in the multiple‐trait model for both breeds. Given the strong effect of NBA on LS21 and LW21, the SEM and causal information might assist with selective breeding for LS21 and LW21 when cross‐fostering occurs.     

Growth responses of cereal crops to organic nitrogen in the field

Eleven rice varieties differing in grain size were grown under controlled environmental conditions during the grain-filling period. The grain weight of upper grains in a panicle was examined at successive stages of growth during the grain-filling period. The effect of temperature on the rate and the duration of the period of grain-filling was determined using Khao Lo, a large-grain variety, and Bom Dia, a small-grain variety. Both the grain-filling rate and duration of the period of grain-filling differed among rice varieties and were positively and significantly correlated with the grain size. The duration of the grain-filling period from flowering to the time when almost maximum grain weight was attained ranged from 12 days at 32/24°C in Bom Dia to 36 days at 20/12°C in Khao Lo. The grain-filling rate was low in small-grain varieties, and generally increased with increasing grain size.

By lowering the temperature, the grain-filling rate decreased, the duration of the grain-filling period increased but the grain weight was almost constant.

Weight per grain was closely correlated with hull size. No relationship was found between weight per grain and nitrogen percentage of brown rice.     

Abstracts of Nipon Dojo-Hiryogaku Zasshi

We investigated changes in radiocesium concentrations in a Japanese chestnut (Castanea crenata Sieold &; Zucc.) orchard in Ibaraki prefecture for 3 years after the Tokyo Electric Power Company’s Fukushima Daiichi nuclear power plant accident in March 2011. The radiocesium concentrations in the aboveground organs of Japanese chestnut trees were almost the same, while the concentration in the roots was the lowest among all the organs investigated. The concentration of radiocesium decreased exponentially for 3 years in nuts, leaves and current shoots. The radiocesium concentrations in soils were higher in the surface layer, and the trend of an annual decrease in radiocesium in the soils was similar to that of the natural decay of radiocesium. The transfer factor of radiocesium from soils to nuts of Japanese chestnut decreased annually. These results suggest that radiocesium adhered directly to the aboveground organs of Japanese chestnut trees in March 2011, and that the accumulation of radiocesium in nuts is mainly due to radiocesium transfer from the branches and trunk to nuts several years after the nuclear power plant accident.     

Varietal difference in radiocesium uptake and transfer from radiocesium deposited soils in the genus Amaranthus

Abstract

Within Amaranthaceae, 33 different varieties, including local varieties from Japan, were grown in 2012 in a field in the town of Iino in the Fukushima prefecture, which is located approximately 51 km north of Tokyo Electric Power Company, Fukushima Daiichi Nuclear Power Plant (FDNPP). The contamination level of the soil was 2770 ± 140 Bq kg^?1 dry weight (¹³⁴Cesium (Cs) + ¹³⁷Cs, average ± SE), and the field was also cultivated in 2011. There was a significant varietal difference in the dry weight production, radiocesium accumulation and transfer factor (TF) of radiocesium from the soil to the plant. The ratio of the lowest TF to the highest TF was approximately 3. Because the ratio of ¹³⁷Cs to ¹³³Cs was significantly positive, radiocesium seems to be absorbed in a manner similar to that of ¹³³Cs. It is suggested that the varietal difference in the behavior of radiocesium uptake mainly depends on its genetic background rather than on environmental factors.     

Internal Mechanisms of Plant Adaptation to Aluminum Toxicity and Phosphorus Starvation in Three Tropical Forages

Many tropical forage grasses and legumes grow well in acid soils, adapting to excess aluminum (Al) and phosphorus (P) starvation stresses by using mechanisms that are still unclear. To determine these mechanisms, responses to Al toxicity and P starvation in three tropical forages were studied: two grasses, Brachiaria hybrid cv. ‘Mulato’ (B. ruziziensis clone 44-06 × B. brizantha cv. ‘Marandú’) and Andropogon gayanus, and one legume, Arachis pintoi. The tropical grasses tolerated high levels of Al toxicity and P starvation, with the Brachiaria hybrid maintaining very low levels of Al concentration in shoots. ²⁷Al Nuclear Magnetic Resonance spectroscopy (NMR) analysis revealed that, in the Brachiaria hybrid, Al makes complexes with some ligands such as organic-acid anions in the root symplast. The forages probably adapted to P starvation through high P-use efficiency. These experiments provide the first direct evidence we know of that organic acid anions within root tissue help detoxify Al in non-accumulator species such as the Brachiaria hybrid.     

Mechanisms of Aluminum Tolerance in Phosphoenolpyruvate Carboxylase Transgenic Rice

Transgenic rice, in which C4-phosphoenolpyruvate carboxylase (PEPC) is overexpressed, was grown in hydroponic culture to evaluate its tolerance for high aluminum (Al) content in relation to organic acid synthesis and exudation into the rhizosphere. With regard to root growth in short-term experiments, PEPC-transgenic rice was more tolerant of Al than the wild type. At increased Al levels in the root medium, root tips of the transgenic rice accumulated less Al than those of the wild type. Aluminum-induced oxalate exudation from roots occurred at increased rates in the transgenic line. Overexpression of C4-PEPC drastically increased PEPC activity in leaves of the transgenic rice, causing higher organic acid concentrations in leaves and roots. The increased organic acid concentrations seemed to cause higher exudation rates of oxalate from roots, leading to a detoxification of Al in the root apoplast and rhizosphere.     

Effect of application of rice straw and cellulose on methane emission and biological nitrogen fixation in a subtropical paddy field

Methane-oxidizing bacteria (MOB, methanotrophs) limit the flux of methane to the atmosphere from sediments and soils, and consume atmospheric methane (King 1992; Oremland and Culbertson 1992). IPCC (1995) reported that an aerobic soil is equivalent to a sink of 10–20% of methane emissions. Hence MOB play an important role in regulating the atmospheric methane content (Mancinelli 1995). Over the last 20y, although a large amount of information has been supplied on the biochemistry of MOB, few ecological investigations have been devoted to them so far (Holzapfel-Pschorn et al. 1985; Oremland and Culbertson 1992).     

Promotive and inhibitory effects of rice straw and cellulose application on rice plant growth in pot and field experiments

Abstract

Quantitative characterization of crusts is necessary to evaluate the crusting susceptibility of soils, to reveal the soil properties affecting soil crust development and, thus, to predict the occurrence of crusting. For the quantification of the morphological characteristics of soil surface crusts, the authors applied an image analyzing method to quantify the state of pores, in terms of apparent porosity, using vertical thin sections of the surface crust formed under simulated rainfall.