Laser-based spectroscopic methods to evaluate the humification degree of soil organic matter in whole soils: a review

Purpose

The objective of this review is to survey critically the results obtained by the application of laser-induced fluorescence spectroscopy (LIFS) and laser-induced breakdown spectroscopy (LIBS) to the evaluation of the humification degree (HD) of soil organic matter (SOM) directly in untreated, intact whole soils.

Materials and methods

A large number of soils of various origin and nature, either native or under various cultivations, land use, and management, at various depths, have been studied to evaluate the HD of their SOM directly in intact whole samples. The LIFS spectra were obtained by either a bench or a portable argon laser apparatus that emits UV-VIS light of high power, whereas the LIBS spectra were obtained using a Q-switched Nd:YAG laser at 1064 nm.

Results and discussion

The close correlations found by comparing H_LIF values of whole soil samples with values of earlier proposed humification indexes confirmed the applicability of LIFS to assess the HD of SOM in whole soils. The high correlation found between HD_LIBS values and H_LIF values showed the promising potential of LIBS for the evaluation HD of SOM.

Conclusions

The LIFS technique shows to be a valuable alternative to evaluate the HD of SOM by probing directly the whole solid soil sample, thus avoiding the use of any previous chemical and/or physical treatments or separation procedures of SOM from the mineral soil matrix. The emerging application of LIBS to evaluate the HD of SOM in whole soils appears promising and appealing due to its sensitivity, selectivity, accuracy, and precision.

     

Effect of the conservation procedure on the contents of phenolic compounds and organic acids in chanterelle (Cantharellus cibarius) mushroom

To check the influence of the conservation procedure in the chemical composition of chanterelle mushroom, phenolic compounds and organic acids of samples preserved under four different conditions (drying, freezing, conservation in olive oil and in vinegar) were determined. Phenolics and organic acids were analyzed by HPLC-DAD and HPLC-UV, respectively. The results showed that chanterelle is characterized by the presence of six phenolic compounds (3-, 4-, and 5-O-caffeoylquinic acid, caffeic acid, p-coumaric acid, and rutin) and five organic acids (citric, ascorbic, malic, shikimic, and fumaric acids). Samples preserved in olive oil also exhibited hydroxytyrosol, tyrosol, luteolin, and apigenin, whereas conservation in vinegar led to the detection of hydroxytyrosol, tyrosol, and tartaric acid in the analyzed samples. The conservation procedures to which chanterelle samples were subjected seem to affect the qualitative and quantitative phenolics and organic acids profiles.     

Copper and Chromium Electrodialytic Migration in CCA-Treated Timber Waste

Chromated copper arsenate (CCA)-treated timber waste is hazardous for the environment due to the leakage of copper, chromium as well as arsenic to the soil and the groundwater. The study concentrates on electrodialytic removal of copper and chromium and their migration behavior in the wood chips and sawdust matrix in an applied electric field. The method is based on the movement of the charged particles in the electric field, enhanced by incubation with oxalic acid (2.5% w/w) and various placement of the contaminated waste in the electrodialytic cell area to analyze the distribution of chemicals in the proposed matrix. The method was tested in laboratory scale experiments where the CCA contaminated wood chips and clean sawdust were placed in various places of the cell, i.e., adjacent to the cathode and anode compartments and in the mid-section of the cell. The duration of each experiment was 14 days and the current was kept constant at 40 mA. During the electrodialytic treatment negative copper and chromium compounds were mostly found in the anolyte or accumulated in the anion-exchange membrane. The amount of positive compounds found in the catholyte is negligible. The placement of contaminated chips close to the anode and cathode showed that copper and chromium moved towards the positively charged anode. If placed in the mid section of the cell, significant amount of contaminants remained bound to the wood matrix or slightly migrated towards the anode. To predict the formation of copper and chromium species at certain pH and Eh, the computer-modeling program MTDATA to generate Pourbaix diagrams was used.     

Intelligent estimation of spatially distributed soil physical properties

Spatial analysis of soil samples is often times not possible when measurements are limited in number or clustered. To obviate potential problems, we propose a new approach based on the self-organizing map (SOM) technique. This approach exploits underlying nonlinear relation of the steady-state geomorphic concave–convex nature of hillslopes (from hilltop to bottom of the valley) to spatially limited soil textural data. The topographic features are extracted from Shuttle Radar Topographic Mission elevation data; whereas soil textural (clay, silt, and sand) and hydraulic data were collected in 29 spatially random locations (50 to 75 cm depth). In contrast to traditional principal component analysis, the SOM identifies relations among relief features, such as, slope, horizontal curvature and vertical curvature. Stochastic cross-validation indicates that the SOM is unbiased and provides a way to measure the magnitude of prediction uncertainty for all variables. The SOM cross-component plots of the soil texture reveals higher clay proportions at concave areas with convergent hydrological flux and lower proportions for convex areas with divergent flux. The sand ratio has an opposite pattern with higher values near the ridge and lower values near the valley. Silt has a trend similar to sand, although less pronounced. The relation between soil texture and concave–convex hillslope features reveals that subsurface weathering and transport is an important process that changed from loss-to-gain at the rectilinear hillslope point. These results illustrate that the SOM can be used to capture and predict nonlinear hillslope relations among relief, soil texture, and hydraulic conductivity data.     

Global analysis of Coffea canephora Pierre ex Froehner (Rubiaceae) from the Guineo-Congolese region reveals impacts from climatic refuges and migration effects

As the second species used for commercial coffee, evaluation of Coffea canephora Pierre ex Froehner population genetics is a challenging task for coffee breeding. This study examined the pattern of genetic variability and genetic relationships of cultivated and wild populations of C. canephora sampled across the Guineo-Congolese region of Africa and some improved populations maintained in field genebanks. A total of 293 individuals, sampled from 17 populations, were genotyped with 39 nuclear microsatellite markers. Genetic diversity and structure were investigated with both a model-based and a graphical approach; isolation by distance was also tested. Relationships between the diversity clusters are discussed with regard to differentiation due to several glacial refuges during the Last Glacial Maximum (LGM). High genetic diversity within C. canephora is confirmed with a mean number of alleles of 11.85 per marker, a mean gene diversity of 0.72 and a mean observed heterozygosity of 0.36. An overall structure of two main groups (Guinean and Congolese) subdivided in six subgroups (2 for the Guinean and 4 for the Congolese) was found, including one described for the first time in the Guinean group. A fine structure within the Guinean group was also newly detected. Genetic structure of C. canephora appears to be consistent with its geographic repartition at the continent scale. Structure of diversity was found in accordance with localizations of refuge zones during LGM and migration from this period. Results from this genetic structure study raise our capabilities to better manage and use the collections of genetics resources for breeding purposes. Those results will be used in future association studies to optimize the number of genotypes to be phenotyped.     

Silicon and salicylic acid promote different responses in legume plants

Abstract

The foliar application of silicon (Si) and salicylic acid (SA) can be beneficial to plants. However, there are doubts about the interaction of Si and SA in the physiology and yield of legume crop. The objective of this study was to evaluate the effects of foliar application of Si and SA on the photosynthetic variables and yield of soybean and bean grains. The experiments were composed by four treatments: potassium silicate and stabilized sodium at a concentration of 3.6?g?L^?1 Si in the absence and presence of SA (210?mg?L^?1), only SA, and without Si or SA. The interaction of Si with foliar SA enhanced photosynthesis only in soybean; it did not affect the physiological variables of bean and did not alter the yield of the two crops. The results indicated that foliar Si application at high concentrations, independently of SA application, increased the physiological variables of the soybean without affecting the yield; however, the combined application of Si and SA had an adverse effect on the physiology and yield of bean.     

Implications of the number of years assessment on recommendation of common bean cultivars

In the common bean crop in Brazil, the requirement of the value for cultivation and use trials is that these experiments must be conducted over two years in three locations per region. Information in regard to the necessary number of years to ensure precision in cultivar recommendation and the influence of evaluated years in the estimation of the GE interaction are still scarce. Using grain yield of five check varieties assessed over 11 years in three sowing seasons per year, the aims of this study are as follows: to measure the relative contribution of the GE interaction, evaluating the implication of the number of years in the estimates of the GE interaction, and infer how many years are needed to ensure precision in cultivar recommendation. For instances, analysis of variance was carried out involving all environments and also combinations of years. The results showed that the GE interaction was greater than all other cross‐effects involving lines. The use of at least two years allows good coincidence in cultivar recommendation compared to the whole period. Increasing the evaluation time is a good strategy, especially when it is difficult to grow three different sowing seasons.