A plant peptide encoded by CLV3 identified by in situ MALDI-TOF MS analysis

The Arabidopsis CLAVATA3 (CLV3) gene encodes a stem cell-specific protein presumed to be a precursor of a secreted peptide hormone. Matrix-assisted laser desorption/ionization-time-of-flight mass spectrometry (MALDI-TOF MS) applied to in situ Arabidopsis tissues determined the structure of a modified 12-amino acid peptide (MCLV3), which was derived from a conserved motif in the CLV3 sequence. Synthetic MCLV3 induced shoot and root meristem consumption as cells differentiated into other organs, displaying the typical phenotype of transgenic plants overexpressing CLV3. These results suggest that the functional peptide of CLV3 is MCLV3.     

Generation of monoclonal antibodies specific for ORF68 of koi herpesvirus

Outbreaks of koi herpesvirus (KHV) infection in carp are still a serious problem worldwide. KHV is closely related to other two cyprinid herpesviruses, pox herpesvirus (CHV) and haematopoietic necrosis herpesvirus (CyHV-2) in goldfish. In this study, two major KHV antigenic proteins (ORF62 and ORF68) were identified by immunoscreening using a KHV-specific polyclonal antibody, and then monoclonal antibodies were generated for immunodiagnostic studies. After screening hybridoma cells, one mAb against ORF68 (mAb-7C6) was obtained but no mAbs against ORF62. mAb-7C6 specifically reacted with a lysate of KHV-infected koi fin cells (KF-1 cells) but not with lysates of CHV- or CyHV-2-infected KF-1 cells in an immuno-blotting analysis. Similar results were shown in the following tests: (1) a indirect fluorescent antibody test using infected KF-1 cells and (2) an immunohistochemical investigation by fast red stain (infected liver) or FITC detection (infected spleen). These results suggested that mAb-7C6 specifically reacts with KHV ORF68 protein.     

Allelic frequencies and association with carcass traits of six genes in local subpopulations of Japanese Black cattle

Marker‐assisted selection (MAS) is expected to accelerate the genetic improvement of Japanese Black cattle. However, verification of the effects of the genes for MAS in different subpopulations is required prior to the application of MAS. In this study, we investigated the allelic frequencies and genotypic effects for carcass traits of six genes, which can be used in MAS, in eight local subpopulations. These genes are SCD, FASN and SREBP1, which are associated with the fatty acid composition of meat, and NCAPG, MC1R and F11, which are associated with carcass weight, coat color and blood coagulation abnormality, respectively. The frequencies of desirable alleles of SCD and FASN were relatively high and that of NCAPG was relatively low, and NCAPG was significantly associated with several carcass traits, including carcass weight. The proportions of genotypic variance explained by NCAPG to phenotypic variance were 4.83 for carcass weight. We thus confirmed that NCAPG is a useful marker for selection of carcass traits in these subpopulations. In addition, we found that the desirable alleles of six genes showed no negative effects on carcass traits. Therefore, selection using these genes to improve target traits should not have negative impacts on carcass traits.     

Effect of age,sex, and breed on serum cystatin C and creatinine concentrations in dogs

Veterinary Research Communications - This study investigated the effects of age, sex and breed on serum cystatin C (Cys-C) and creatinine in small breed dogs. This retrospective study included 250...     

A method to determine lumen volume and collapse degree of pulp fibers by using bottleneck effect of mercury porosimetry

On applying mercury porosimetry to wood blocks or paper sheets, the “bottleneck” effect due to pits of fibers occurs and thus lumen volume can be determined from the weight increase due to the remaining mercury. However, in addition to the mercury in the lumen, some mercury drops may also remain in the space between fibers within a paper sheet. The mercury between fibers increased with an increase of basis weight. Thus, a large number of paper sheets of low basis weight, such as 10 g·m⁻², should be used to determine the lumen volume of pulp fibers. Furthermore, in the case of fibers from mechanical pulp with many open cut fibers, mercury can retract from the open lumen such that the bottleneck effect due to pits does not occur. Therefore, the degree to which fibers are cut should also be considered for lumen volume determination. Although quantitative estimation of open cut fibers is difficult, the percentage of open cut fibers is quite low for the long fiber fraction. Thus, the remaining mercury for the long fiber fraction can be adopted as the lumen volume at least for practical purposes. Compared with the original lumen volume of the wood, the volumetric degree of fiber collapse was also estimated. Plausible values of almost 100% for lightly beaten KP and about 85% for slabwood thermomechanical pulp were obtained for the degree of collapse. Part of this report was presented at the 56th Annual Meeting of the Japan Wood Research Society, Akita, August 2006     

Structure, allometry, and biomass of plantation Metasequoia glyptostroboides in Japan

We quantified structural features and the aboveground biomass of the deciduous conifer, Metasequoia glyptostroboides (Hu and Cheng) in six plantations in central Japan. In order to derive biomass estimates we dissected 14 M. glyptostroboides trees into three structural components (stem wood, branch wood and foliage) to develop allometric equations relating the mass of these components and of the whole tree to diameter at breast height (DBH). We found robust relationships at the branch and whole tree level that allow accurate prediction of component and whole tree biomass. Dominant tree height was similar within five older (>40 years) plantations (27–33 m) and shorter in a 20-year-old plantation (18 m). Average stem diameter varied from 12.8 cm in the youngest stand to greater than 35 cm in the oldest stand.

Metasequoia have relatively compact crowns distributed over the top 30% of the tree although the youngest stand had the deepest crown relative to tree height (up to 38%). At the individual tree level in older stands, 87% of the aboveground biomass was allocated to the stem, 9% to branch wood and 4% to foliage. We found little difference in the relative distribution of above ground biomass among the stands with the exception of lower foliage biomass in larger diameter trees. Total aboveground biomass of the older stands varied twofold, ranging from a maximum of 450 Mg ha⁻¹ in a 42-year-old stand to a minimum of 196 Mg ha⁻¹ in a 48-year-old stand. Total above ground biomass of the 20-year-old stand was 176 Mg ha⁻¹.     

Effect of Simulated Acid Rain on Deterioration of Concrete

In the study the long-term exposure tests to simulated acid rain were performed in order to clarify the effect of acid rain on deterioration of concrete. Mortar specimens with 40 mm in width, 15 mm in thickness and 160 mm in length were used for the tests. At each time after the fixed rainfall was attained, those were tested physically and analyzed chemically. Finally total rainfall of 9000mm was given to the specimens. From the test results, it was confirmed that the eroded depth of the specimen has a good linear relation to the total rainfall under simulated acid rain with various pH. Surface erosion rates of the mortar specimens with an ordinary mix proportion under simulated acid rains with pH 3.0 and 2.5 were about 1.2 and three times larger than that under pH 5.6, respectively. It was also confirmed that flexural strength of the specimens with an ordinary mix proportion hardly changed under low pH simulated acid rain even after total rainfall of 9000mm was given.     

Laboratory observations of habitat selection in aestivating and active adult sea cucumber <Emphasis Type="Italic">Apostichopus japonicus</Emphasis>

In order to verify which factors affect habitat selection for aestivating and in the active adult Apostichopus japonicus, animals were tested for their selection of attachment site in an experimental device (1-m pipes) in which the perceived environmental stimuli (light intensity, degree of contact with a hard surface, geotaxis) varied depending on the attachment site. During the aestivating season, the animals showed a strong selection for attachment sites during the daytime and nighttime; they also showed positive stereotaxis (thigmotaxis), negative phototaxis, and negative geotaxis. The results suggest that (1) habitats are not suitable for the aestivating adult A. japonicus unless these three environmental requirements are satisfied.     

Complete Lipooligosaccharide Structure from Pseudoalteromonas nigrifaciens Sq02-Rifr and Study of Its Immunomodulatory Activity

Lipopolysaccharides (LPS) are surface glycoconjugates embedded in the external leaflet of the outer membrane (OM) of the Gram-negative bacteria. They consist of three regions: lipid A, core oligosaccharide (OS), and O-specific polysaccharide or O-antigen. Lipid A is the glycolipid endotoxin domain that anchors the LPS molecule to the OM, and therefore, its chemical structure is crucial in the maintenance of membrane integrity in the Gram-negative bacteria. In this paper, we reported the characterization of the lipid A and OS structures from Pseudoalteromonas nigrifaciens Sq02-Rif^r, which is a psychrotrophic Gram-negative bacterium isolated from the intestine of Seriola quinqueradiata. The immunomodulatory activity of both LPS and lipid A was also examined.     

Basic studies on hybrid wheat breeding using the 1BL-1RS translocation chromosome / Aegilops kotschyi cytoplasm system 1. Development of male sterile and maintainer lines with discovery of a new fertility-restorer

The Aegilops kotschyi cytoplasm and a 1BL-1RS translocation chromosome that consists of the long arm of wheat chromosome 1B and the short arm of rye chromosome 1R were transferred to six spring common wheat cultivars by repeated backcrossing. Resistance to leaf rust race 21B conditioned by the Lr26 gene and a secalin subunit encoded by the Sec-1 gene, both on the 1RS arm, were used as the selection markers of the translocation chromosome. Five of the six cultivars used were converted to complete male steriles, whereas the remaining one, cv. Kitamiharu 48, retained normal fertility, after transfer of both the 1BL-1RS chromosome and Ae. Kotschyi cytoplasm. Conventional gene analysis suggested that Kitamiharu 48 carries an incompletely dominant fertility-restoring gene. The F₁ hybrids between the male steriles and ordinary common wheat cultivars recovered fertility only at a low level, indicating that a single dose of the Rfv1 gene on the 1BS arm of wheat is insufficient for full fertility restoration under spring-sowing condition. Our results are in clear contrast to complete fertility restoration under fall-sowing condition reported by Nonaka et al. (1993). Combination of the 1BL-1RS chromosome / Ae. Kotschyi cytoplasm system with a new fertility-restoring gene discovered in Kitamiharu 48 may provide a breakthrough for spring-type hybrid wheat. This revised version was published online in August 2006 with corrections to the Cover Date.