P and N deficiency change the relative abundance and function of rhizosphere microorganisms during cluster root development of white lupin (Lupinus albus L.)

We studied microbe-plant interactions of white lupin, a cluster root-forming plant, under low P and N conditions to examine increased nutrient acquisition by plants either by a shift to a more specialized microbial community or changes in microbial enzyme production. White lupin plants were grown in rhizoboxes filled with either P- or N-deficient soil; fertilized soil was used as control. After cultivation of plants in a glasshouse for 41 d, plant growth (shoot and roots) and P and N accumulation in shoots were measured. Microbial functions were analyzed by P- and N-cycling enzymes. The microbial community structure was estimated by fingerprinting (denaturing gradient gel electrophoresis) and sequencing techniques. P deficiency induced the released citrate and acid phosphomonoesterases from cluster roots and stimulated the production of microbe-derived alkaline phosphomonoesterase in the rhizosphere. P deficiency decreased microbial diversity in the cluster root rhizosphere. Increased relative abundance of Burkholderiales in the rhizosphere of P deficient plants might be responsible for the degradation of different organic P fractions such as phytates. N deficiency induced an increase of the number of nodules and P concentration in shoot as well as roots of white lupin. We clarified that high release of citrate from cluster roots might be the preferred mechanisms to meet the P demand of nodulated plants under N deficiency. In addition, the high abundance of Rhizobiales and Rhodospirillales in the rhizosphere of cluster roots showed that the importance of N-fixing microorganisms under N deficiency. The contribution of rhizosphere microorganisms due to similar activities of N-cycling enzymes under the two different N treatments is less important for N nutrition of plants. Further understanding of the regulation of cluster roots under N-deficiency will provide new information on the interactions between P and N nutrition.     

Can stumps tell what people want: Pattern and preference of informal wood extraction in an urban forest of Nairobi, Kenya

Detailed patterns and preferences of informal wood extraction were investigated in an urban forest used by slum inhabitants of Nairobi, Kenya, as such information determines the sustainability of resource use. Instead of asking the people what they had secretly cut, a survey was conducted of the stumps and trees left in the forest to (i) evaluate how accessibility and patrolling affected spatial patterns of resource use, and to (ii) estimate a broad spectrum of species and species-specific size preferences. Both probability and size of cutting increased with better accessibility (represented by distance from the slum), and stump size exceeded that of living stem size around 1.7 km from the slum, which suggested magnified impact of tree cutting near the slum. Patrolling (represented by distance from ranger stations) had little effect in reducing the probability of cutting but was effective in reducing cut size. With the use of random effect models, a broad species preference spectrum (including less abundant and non-preferred species) was estimated, which indicated trends in vegetation change. Smaller stems were preferred for most species presumably used for domestic fuelwood, but major exploitation of large Brachylaena huillensis stems traded in the woodcarving industry was also revealed. Such detailed information on informal wood use can help forest managers to understand threats to the forests as well as the needs of local communities. This is a first step to redefining ‘acceptable’ resource use by the local community for their increased role and responsibility in sustainable forest management, especially when conventional controls of informal activities (i.e. exclusion and penalty) are not functioning well.     

Difference in diffusion coefficients of 14NO3 −-N and 15NO3 −-N affects the apparent fractionation factor associated with denitrification in soil

Abstract

We previously analyzed the effect of nitrate dispersion on the apparent nitrogen isotope fractionation factor associated with denitrification in soil (Kawanishi et al. 1993), and found that the dispersion effect was significant when the water flow was slow. In the previous report, we assumed that the dispersion coefficients of ¹⁴NO₃ ^? and ¹⁵NO₃ ^? were similar. However, when the water flow is slow, molecular diffusion will dominate mechanical dispersion and the above assumption may not be valid.     

Bacterial 16S rDNA sequences in immature volcanic ash soil on volcanoes Mt. Sakurajima and Mt. Fugen in Japan determined by PCR amplification

Volcanogenous soils are widely distributed in Japan. Andosols, a group of volcanogenous soil, are known to show several physicochemical characteristics such as high porosity, presence of allophane, and high content of organic carbon (FitzPatrick 1980). The formation of Andosols is a very rapid process resulting from the large surface area of the volcanic ash-derived parent materials.     

Nitrate adsorption in some andisols developed under different moisture conditions

Nitrate leaching from agricultural lands is one of the most critical problems related to both environmental quality and human health. Although in many studies surfacecharge properties of and nitrate adsorption in soils have been analyzed in tropical and subtropical regions, fewer studies have been conducted on the nitrateretention properties of allo phanic Andisols. The objectives of the present study were to examine the potential nitrate adsorption capacity and the factors affecting nitrate retention in topsoils and subsoils of three Andisols Tokaachi, Hokkaido. Nitrate adsorption at pH 6.0 was found to be low or negligible even in the subsoil of a Haplic Wet Andisol (Melanaquands), despite the high clay content, Nitrate adsorption maxima calculated from the Langmuir equation were higher in the lower horizons of a Haplic Andisol (Melanudands) and a Lowhumic Andisol (Hap ludands), which were developed under moderate to moderately dry moisture conditions and displayed a high allophane content and a low total carbon content. The nitrate adsorption of the aliophanic Andisols was much higher than that reported from other studies conducted in Ultisols and Oxisols, which are rich in iron oxides. The potential capacity to adsorb nitrates and retard nitrate movement should be taken into account in predicting the fate of nitrate in soils and the consequent mitigation of groundwater contamination.     

The possible role of the tibial plateau angle for the severity of osteoarthritis in dogs with cranial cruciate ligament rupture

The purpose of this study was to determine factors correlated with the severity of radiographic osteoarthritis (OA) scoring in dogs with cranial cruciate ligament rupture (CrCLR). Three radiographs of stifle joints (craniocaudal, mediolateral, and mediolateral radiograph with 90 degree flexion of the stifle and tarsal joints) were obtained from 36 dogs with CrCLR (Clinical group) and from 22 dogs without stifle joint disease (Control group). Information about these dogs was collected from the owners and from medical records. Radiographic OA scores in each dog in the clinical group were determined from radiographs using a numeric grading system previously reported. The tibial plateau angle (TPA) in each dog in both groups was measured on mediolateral radiographs with 90 degree flexion of the stifle and tarsal joints. The Mann-Whitney's U test was used for comparing variables between the clinical group and the control group, and Spearman's rank correlation test was used for evaluating correlations between radiographic OA scores and variables in the clinical group. No significant differences were detected between the clinical group and the control group for any of the variables. There were two positive correlations; one between the radiographic OA score and TPA (r=0.395, p=0.014); and the other between body weight and OA score (r=0.399, p=0.013) in the clinical group. Our results indicate that body weight and TPA could affect the severity of the radiographic OA score in dogs with CrCLR.     

Identification of genetic and epigenetic similarities of SPHK1/Sphk1 in mammals

In normal tissues, methylation of CpG islands is generally accepted to be limited to the inactive X-chromosome and imprinting clusters. Gene Sphk1 has shown complex organization, indicated by multiple alternative splicing and tissue-dependent DNA methylation within the limited area (T-DMR) of the CpG island in the rat. Comparisons among human, mouse and rat SPHK1/Sphk1 genomic DNA revealed five coding exons and association of a CpG island at the 5' end in common. We also found two novel subtypes, for a total of eight mRNA subtypes generated through selective usage of untranslated first exons. A 38-bp region at the 5'-end of T-DMR is highly conserved. This restricted area is specifically hypomethylated in the brain. Here, we examine the complex genetic/epigenetic features of the SPHK1/Sphk1 CpG island, and suggest that the T-DMR is the core target for tissue-dependent CpG island methylation.     

Binding of Vibrio anguillarum to neutral glycosphingolipids from intestinal mucosa of rainbow trout (Oncorhynchus mykiss)

To test whether glycosphingolipids (GSLs) on the intestinal mucosa of rainbow trout (Oncorhynchus mykiss) serve as a binding receptor for Vibrio anguillarum, we analyzed neutral GSLs from rainbow trout intestinal mucosa and investigated the binding of bacteria to neutral GSLs. Two kinds of neutral GSLs, designated N-1 and N-2, were identified on high-performance thin-layer chromatography (TLC) plates. In TLC immunostaining tests, V. anguillarum bound only to galactosylceramide (GalCer), lactosylceramide and N-1 having the same TLC mobility as GalCer, but neither to glucosylceramide nor to N-2. These results suggest that N-1 is GalCer (Gal beta 1-1Cer) and also that N-1 (GalCer) on rainbow trout intestinal mucosa act as a receptor for V. anguillarum.     

Genetic characterization of rabies viruses isolated from frugivorous bat (Artibeus spp.) in Brazil

In Latin America, rabies cases related to frugivorous bats have been reported since 1930's. Recently, two viruses isolated from Artibeus lituratus were proved to be vampire bat variants by monoclonal antibodies panels [2], but their genetic information is not well known. In this report, four rabies viruses were isolated from frugivorous bats (Artibeus spp.) in Brazil and their nucleoprotein gene sequences were determined. These isolates were found to be genotype 1 of lyssavirus and showed the maximum nucleotide sequence homology of 97.6-99.4% with vampire bat-related viruses in Brazil [6]. These results indicate that the Brazilian frugivorous bat rabies viruses in this study are closely related to vampire bat-related viruses that play a main role in rabies virus transmission to livestock in Brazil.     

Relationship between arginine vasopressin and high signal intensity in the pituitary posterior lobe on T1-weighted MR images in dogs

The posterior lobe of the pituitary gland (PL) normally shows characteristic high signal intensity (SI) on T1-weighted MR images (T1WI) in humans. The high SI is thought to represent storage of arginine vasopressin (AVP) in the PL. Normal dogs also show a high SI on T1WIs, but the origin is unclear. In the present study, we investigated whether the high SI in the PL on T1WIs in normal dogs is caused by AVP. We examined the SI in the PL on T1WIs, plasma AVP concentrations and plasma osmolality in normal dogs after excessive AVP secretion was induced by hypertonic saline overload. In addition, functional changes in the supraoptic nucleus and paraventricular nucleus of the hypothalamus under AVP secretion-stimulated conditions were examined immunohistologically. Under hypertonic saline overload, plasma osmolality and plasma AVP concentrations gradually increased, while the SI of the PL gradually decreased. This suggests that AVP secretion was stimulated by elevated osmolality. Moreover, there was a significant negative correlation between plasma AVP concentrations and the SI ratio of the PL. An immunohistochemical study of the hypothalamus nucleus revealed that AVP-immunopositive cells significantly increased in the hypertonic saline loaded dogs. We concluded that the high SI in the PL in T1WIs in normal dogs was caused by AVP stored at the site, and examination of the SI in the PL using MRI is useful for diagnosis of abnormal pituitary glands.