Lineage specific detection of the scaly form of the pen shell <Emphasis Type="Italic">Atrina</Emphasis> spp. by a loop-mediated isothermal amplification method

Taxonomy of the pen shell (genus Atrina) in East Asia has been confused because of the plasticity of the shell morphology and lack of unified morphological characteristics. We analyzed the mitochondrial cytochrome c oxidase subunit I (COI) sequence of the pen shell sampled from Ariake Bay and Seto Inland Sea, western Japan. All individuals were identified as the scaly form based on external morphology; however, their COI sequences were comprised of two distinct lineages. The sequence divergence between the two was 8.3%, indicating the high possibility that they are different species. The scaly form of the pen shell in Japan is one of the target species for resource enhancement, therefore COI lineage identification of broodstock individuals is critically important to avoid producing hybrid seed. We developed a loop-mediated isothermal amplification method that enables specific detection of the two lineages. This method can contribute to reducing the cost and time required for genotyping broodstock individuals prior to seed production.     

Use of batch leaching tests to quantify arsenic release from excavated urban soils with relatively low levels of arsenic

Purpose

In Japan, the excavated soils produced from constructions projects, which contain relatively low levels of arsenic (As), are considered as a potential concern if they could release significant amount of As to the environment. The aim of this study was to investigate the As leaching from excavated alkaline soils and, in particular, the influence of drying methods, pH of extracting solution, and consecutive washing on As leaching from these soils.

Materials and methods

Four excavated alkaline soils obtained from different construction sites in Tokyo, Japan, were used in this study. The soils were pretreated by three drying methods (air-dried, 40 °C-dried, and freeze-dried). Sequential extraction procedure was applied to partition As into five operationally defined chemical fractions. Batch leaching tests (initial pH-controlled leaching test and consecutive washing test) were conducted to investigate the As release under different leaching conditions.

Results and discussion

The As contents in the four soils were 9.22, 79.4, 6.75, and 11.7 mg kg^?1, respectively, and As was primarily associated with the residual phase. Arsenic leaching was strongly dependent on the extracting solution pH values. Strongly acidic extracting solution (pH 2) led to circumneutral leachates and limited As mobility, whereas the strong alkaline-extracting solution (pH 12) greatly enhanced the As release from these soils. The consecutive washing test results revealed a long-term release of As from these excavated soils. The pollution potential indices (PPIs) were successfully used to evaluate the pollution threat of As leaching from excavated soils. In addition, different drying methods resulted in variations in the short- and long-term release of As from these excavated soils.

Conclusions

The results revealed that the soil pretreatment and the leaching conditions should be considered if we want to use batch tests for the contamination assessment of excavated urban soils from construction projects. Different drying methods and single extraction may lead to misestimation of the As pollution level. High extraction efficiency with strong alkaline-extracting solution (pH 12) reveals that it could potentially be used to wash As from excavated alkaline soils.

     

Fractionation of phosphorus in soils with different geological and soil physicochemical properties in southern Tanzania

ABSTRACT

Soil phosphorus (P) forms have been practically defined as chemically fractionated pools. A knowledge of the abundance and diversity of P forms in soil, and the factors affecting them, will lead to better soil management. However, little is known about the differences in P forms among soils with different geological properties in tropical Africa. The aim of this study was to investigate the P forms in soils with different physicochemical properties formed under different geological conditions in southern Tanzania and to identify the factors affecting the P forms in these soils. In total, 37 surface soil samples were collected from three geological groups; the plutonic (mainly granite) rock (PL) group, the sedimentary and metamorphic rock (SM) group, and the volcanic ash (V) group. Soil P was sequentially extracted by NH₄Cl, NH₄F, NaHCO₃, NaOH + NaCl, and HCl, and inorganic (P_i) and organic P (P_o) in each fraction were determined. The lowest total P was in the PL group (average, 360 mg P kg^-1) because of the high sand content. Iron (Fe)-P (NaOH-P_i) was the major form in this group, accounting for 8.4% of total P. In the SM group (average total P, 860 mg P kg^-1), Fe-P was the major form in most, accounting for 7.8% of total P. Soils in the SM group occasionally had high calcium (Ca)-P due to application of chemical fertilizer at the collection site. The V group had the highest total P (average, 1600 mg P kg^-1) and its major P form was Ca-P, which was possibly derived from primary minerals (i.e., apatite), accounting for 14% of total P. In addition, the high oxalate-extractable Al possibly caused the accumulation of Al-P in the V group. Oxalate-extractable Fe generally increased with increasing Fe-P_i, while oxalate-extractable Al increased with increasing organic P and Al-P_i in soils in all three geological groups. These results demonstrate that the soil P forms differ greatly among sites in southern Tanzania with different geological conditions and associated soil properties.     

Lack of Modifying Effects of Intratracheal Instillation of Quartz or Dextran Sulfate Sodium (DSS) in Drinking Water on Lung Tumor Development Initiated with 4-(Methylnitrosamino)-1-(3-pyridyl)-1-butanone (NNK) in Female A/J Mice

The purpose of the present study was to investigate the effects of inflammation, induced by intratracheal instillation (i.t.) of quartz as an environmental factor in the lung or drinking of dextran sulfate sodium (DSS) as an environmental factor in the colon on lung tumors in female A/J mice initiated with NNK. For comparison, colonic preneoplastic lesions, aberrant crypt foci (ACF), were also assessed. A/J mice at 6 weeks of age were divided into 5 groups, and Groups 1, 2 and 3 were pretreated with NNK (2 mg / 0.1 ml saline / mouse, intraperitoneal injection) at week 0. For a week, 2% DSS in drinking water was administered to the mice in Groups 2 and 4 beginning in week 1. In week 2, the mice of Groups 3 and 5 were exposed to intratracheal instillation of quartz (0.1 mg/rat) suspended in 25 μl saline. The experiment was terminated after 16 weeks. The results for the lung tumors and colonic ACFs showed a lack of modifying effects of the inflammation in either site. Hematologically and histopathologically, the inflammation induced by 0.1 mg quartz in the lung and 2% DSS in the colon was lacking or only mild at the end of 16 weeks. These results suggest that there may be differences in sensitivity to inflammation that determine tumor promoting potential.