The Ashbya gossypii genome as a tool for mapping the ancient Saccharomyces cerevisiae genome

We have sequenced and annotated the genome of the filamentous ascomycete Ashbya gossypii. With a size of only 9.2 megabases, encoding 4718 protein-coding genes, it is the smallest genome of a free-living eukaryote yet characterized. More than 90% of A. gossypii genes show both homology and a particular pattern of synteny with Saccharomyces cerevisiae. Analysis of this pattern revealed 300 inversions and translocations that have occurred since divergence of these two species. It also provided compelling evidence that the evolution of S. cerevisiae included a whole genome duplication or fusion of two related species and showed, through inferred ancient gene orders, which of the duplicated genes lost one copy and which retained both copies.     

Rescue of American chestnut with extraspecific genes following its destruction by a naturalized pathogen

Following the near-obliteration of American chestnut (Castanea dentata [Marsh.] Borkh.) by the chestnut blight early in the last century, interest in its restoration has been revived by efforts to develop a blight-resistant form of the species. We summarize progress and outline future steps in two approaches: (1) a system of hybridizing with a blight-resistant chestnut species and then backcrossing repeatedly to recover the American type and (2) transformation of American chestnut with a resistance-conferring transgene followed by propagation and conventional breeding. Several decades of effort have been invested in each approach. More work remains, but results indicate that success is within practical reach. The restoration of C. dentata to its native habitat now appears to be less a matter of time and conjecture than ever before in 90 years of work by public and private entities. The difficult and protracted task of incorporating extraspecific genes for resistance into a tree species with lethal susceptibility to a naturalized pathogen represents perhaps the most extreme of restoration challenges. Its pursuit by a small non-governmental organization supported primarily by philanthropy and volunteers may serve as a model for other species threatened by exotic pathogens or insects.     

Cross-taxon congruence of species diversity and community similarity among three insect taxa in a mosaic landscape

Surrogate taxa as indicators for biodiversity are widely used in conservation biology and ecology. However, available studies on the congruence of species diversity patterns in different taxa yielded inconsistent results, and correlations between taxa were few. To conserve or restore biodiversity in agricultural landscapes, knowledge on the response of different taxa to management regimes is crucial. In the present study we evaluated the congruence of diversity and similarity patterns among three insect taxa, i.e., bees, grasshoppers, and aculeate wasps, in a mosaic landscape in the Swiss Alps comprising extensively used grassland under different management regimes. In addition, we studied the influence of land use on the diversity and species composition of the three taxa. While species numbers were not significantly correlated between any pair of taxa, community similarities were positively correlated between bees and grasshoppers. The number of red-listed species was not correlated with the total number of species in bees and in grasshoppers. None of the investigated taxa reflected the species numbers or community similarities of the other taxa well enough to qualify as a general indicator for biodiversity. Remarkably, land use clearly influenced species composition, while its effect on species numbers was not significant. All management regimes of the grassland in the study area contribute substantially to the overall diversity of the three insect taxa. Conserving the variety of agricultural land uses will be the most promising step towards the conservation of biodiversity in the study area.     

鉴别丁香假单胞菌丁香致病变种和豌豆致病变种的 DNA 探针的制备

把引起豌豆枯萎病的丁香假单胞菌丁香致病变种 Pseudomonas syringae pv.syringae 菌株3319和丁香假单胞菌豌豆致病变种 P.syringae pv.pisi 的模式菌株2452的染色体 DNA 分别用限制性核酸内切酶 HindⅢ完全消化,再用 T_4DNA 连接酶把消化好的 DNA 片段连接到用HindⅢ内切酶消化的质粒载体 pUC19上,然后把重组的质粒载体转化到大肠杆菌(E.coli RR1)中去克隆.把菌株3319和2452的 DNA 用 p~(32)标记做成探针,分别与克隆菌落杂交,筛选出只对菌株3319的 DNA 有特异性的1个重组 DNA 的克隆和对菌株2452的 DNA 有特异性的2个重组 DNA 克隆.再把这3个重组质粒 DNA 分别用 P~(32)标记做成探针,与菌株3319和2452的 DNA 杂交,也显示只对各自 DNA 来源的菌株具有特异性.这3个重组质粒中,有2个携带有菌株2452的 DNA 片段,1个为0.82 kb。另1个略小于0.58 kb,还有1个质粒携带有菌株3319的 DNA 片段,为0.85 kb.     

Antimicrobial resistance in bacteria from Swiss veal calves at slaughter

Bacteria with antimicrobial resistance can be transferred from animals to humans and may compromise antimicrobial treatment in case of infection. To determine the antimicrobial resistance situation in bacteria from Swiss veal calves, faecal samples from 500 randomly selected calves originating from 129 farms were collected at four big slaughterhouses. Samples were cultured for Escherichia coli, Enterococcus sp. and Campylobacter sp. and isolated strains were tested for antimicrobial susceptibility to selected antimicrobial agents by the minimal inhibitory concentration technique using the broth microdilution method. From 100 farms, data on farm management, animal husbandry and antimicrobial treatments of the calves were collected by questionnaire. Risk factors associated with antimicrobial resistance were identified by logistic regression. In total, 467 E. coli, 413 Enterococcus sp. and 202 Campylobacter sp. were isolated. Of those, 68.7%, 98.7% and 67.8%, respectively, were resistant to at least one of the tested antimicrobial agents. Resistance was mainly observed to antimicrobials frequently used in farm animals. Prevalence of resistance to antimicrobials important for human treatment was generally low. However, a rather high number of quinupristin/dalfopristin-resistant Enterococcus faecium and ciprofloxacin-resistant Campylobacter sp. were detected. External calf purchase, large finishing groups, feeding of milk by-products and administration of antimicrobials through feed upon arrival of the animals on the farm significantly increased the risk of antimicrobial resistance at farm level. Participation in a quality assurance programme and injection of a macrolide upon arrival of the animals on the farm had a protective effect. The present study showed that veal calves may serve as a reservoir for resistant bacteria. To ensure food safety, veal calves should be included in the national monitoring programme for antimicrobial resistance in farm animals. By improving farm management and calf husbandry the prevalence of resistance may be reduced.     

Gold nanoelectrodes of varied size: transition to molecule-like charging

A transition from metal-like double-layer capacitive charging to redox-like charging was observed in electrochemical ensemble Coulomb staircase experiments on solutions of gold nanoparticles of varied core size. The monodisperse gold nanoparticles are stabilized by short-chain alkanethiolate monolayers and have 8 to 38 kilodaltons core mass (1.1 to 1.9 nanometers in diameter). Larger cores display Coulomb staircase responses consistent with double-layer charging of metal-electrolyte interfaces, whereas smaller core nanoparticles exhibit redox chemical character, including a large central gap. The change in behavior is consistent with new near-infrared spectroscopic data showing an emerging gap between the highest occupied and lowest unoccupied orbitals of 0.4 to 0.9 electron volt.     

Evaluation of gastrointestinal permeability and mucosal absorptive capacity in dogs with chronic enteropathy

OBJECTIVE: To assess intestinal mucosal function by measuring permeability and absorptive capacity in dogs with chronic enteropathy (CE) before and after treatment and to determine whether those variables were correlated with clinical disease activity or histologic scoring of intestinal biopsy specimens. ANIMALS: 29 dogs with CE. PROCEDURE: Dogs were designated as having dietresponsive CE or CE requiring glucorticoid treatment. Severity of clinical signs was assessed by calculating the canine inflammatory bowel disease activity index (CIBDAI). Histologic severity of intestinal infiltration was assessed before and after 4 weeks of treatment in the diet-responsive group and before and after 10 weeks of treatment in the glucocorticoid group. Gastrointestinal permeability and mucosal absorptive capacity were assessed by use of intragastric administration of a solution containing lactulose, rhamnose, xylose, 3-O-methylglucose, and sucrose. Urine was collected 6 hours after administration of the sugar solution to determine urinary lactulose-to-rhamnose (L:R), xylose-to-methylglucose (X:M), and sucrose-to-methylglucose (S:M) ratios. RESULTS: Median CIBDAI scores decreased significantly in both groups of dogs after treatment. However, the median histologic grade of intestinal biopsy specimens did not change with treatment in either group. There were no significant differences in L:R, X:M, or S:M ratios after treatment in either group and no significant correlations between L:R, X:M, or S:M ratios and CIBDAI or histologic scores. CONCLUSIONS AND CLINICAL RELEVANCE: Results of tests for intestinal permeability and mucosal absorptive capacity were not useful indicators of clinical disease activity as assessed by the CIBDAI or the sever ity of infiltration as indicated by histologic evaluation.