Report on the 42nd joint meeting of the DPG-working group Nematology and the working group “free living nematodes”

Journal of Plant Diseases and Protection -     

Tree structure and diversity of lowland Atlantic forest fragments: comparison of disturbed and undisturbed remnants

This study describes the tree community structure of three moist lowland Atlantic Forest fragments in Rio de Janeiro State, southeastern Brazil. Two fragments were disturbed and an undisturbed one was used as reference. Our hypothesis was that disturbed fragments show distinct structural patterns in comparison with undisturbed stands due to past disturbance practices and forest fragmentation. Four 100 ×5 m sampling plots were demarcated in each fragment and all live and dead trees with DBH C 5 cm were located, measured and identified. The results supported our hypothesis, due to the high values found for standing dead trees, an increase of dominance of a few pioneer species, lower values of large trees and species richness in disturbed fragments in comparison with the undisturbed one. The advanced fragmentation process in the Southern Brazilian lowland areas and the high species richness in undisturbed areas highlight these forest fragments as priority areas for conservation and management.     

Improved strategy for phylogenetic analysis of classical swine fever virus based on full-length E2 encoding sequences

ABSTRACT: Molecular epidemiology has proven to be an essential tool in the control of classical swine fever (CSF) and its use has significantly increased during the past two decades. Phylogenetic analysis is a prerequisite for virus tracing and thus allows implementing more effective control measures. So far, fragments of the 5′NTR (150 nucleotides, nt) and the E2 gene (190 nt) have frequently been used for phylogenetic analyses. The short sequence lengths represent a limiting factor for differentiation of closely related isolates and also for confidence levels of proposed CSFV groups and subgroups. In this study, we used a set of 33 CSFV isolates in order to determine the nucleotide sequences of a 3508-3510 nt region within the 5′ terminal third of the viral genome. Including 22 additional sequences from GenBank database different regions of the genome, comprising the formerly used short 5′NTR and E2 fragments as well as the genomic regions encoding the individual viral proteins Npro, C, Erns, E1, and E2, were compared with respect to variability and suitability for phylogenetic analysis. Full-length E2 encoding sequences (1119 nt) proved to be most suitable for reliable and statistically significant phylogeny and analyses revealed results as good as obtained with the much longer entire 5′NTR-E2 sequences. This strategy is therefore recommended by the EU and OIE Reference Laboratory for CSF as it provides a solid and improved basis for CSFV molecular epidemiology. Finally, the power of this method is illustrated by the phylogenetic analysis of closely related CSFV isolates from a recent outbreak in Lithuania.     

Past land-use and ecological resilience in a lowland Brazilian Atlantic Forest: implications for passive restoration

The ecological resilience of abandoned pastures has important implications for the potential of passive restoration in the Brazilian Atlantic Forest, especially in the face of the ambitious restoration targets for this biodiversity hotspot. In the present study, we aimed to investigate the influence of past land-use on natural regeneration in two secondary forests that established on abandoned pastures with different land use histories (Abandoned + Fire—15 years since the last fire event and Abandoned—36 years ago) in a lowland Brazilian Atlantic Forest. Both secondary forests exhibit low resilience for the three analyzed attributes: vegetation structure, richness, and species composition. Secondary forests affected by fire have the lowest values for species richness, aboveground biomass and leaf area index compared to old-growth forests. Secondary forests were dominated by Moquiniastrum polymorphum—Asteraceae, which was absent from the old-growth forests. Fire resistance, capacity to establish in nutrient-poor soils and efficient seed dispersal in human-modified landscapes are important attributes that may explain the dominance of this species. We demonstrate that even in sites considered appropriate for passive restoration a priori (e.g. located in a protected area, 36 years since abandonment and close to old-growth forests), secondary forests exhibited low aboveground biomass and communities were dominated by few species. Therefore, our results highlight the effects of past land-use on natural regeneration and suggest the necessity to use interventions such as enrichment plantings, nucleation techniques and assisted natural regeneration in order to accelerate forest restoration.