Comparative proteomic analysis of kernel proteins of two high amylose transgenic durum wheat lines obtained by biolistic and Agrobacterium-mediated transformations

In this work, we compared the proteome of mature and immature kernels of transgenic and untransformed durum wheat lines in which genes of the starch branching enzymes of class II (SBEIIa) were silenced by RNA interference using two different methods of genetic transformation. The comparative analysis of granule bound and metabolic protein fractions of Svevo and Ofanto and their derived transgenic lines highlighted twenty four and thirty three differentially accumulated spots, respectively, in the line MJ16-112 (obtained by biolistic transformation of Svevo) and in the line A431_4p1a (obtained by Agrobacterium-mediated transformation of Ofanto).     

Nanopore sequencing for the detection and identification of Xylella fastidiosa subspecies and sequence types from naturally infected plant material

Xylella fastidiosa (Xf) is a gram-negative bacterial plant pathogen that can infect over 500 plant species. While it is endemic in America, X. fastidiosa subsp. pauca was reported for the first time in Europe in 2013 on olive trees in southern Italy. The availability of fast, sensitive, and reliable diagnostic tools is indispensable for managing current and future outbreaks of Xf. In this paper, we use the OXford Nanopore Technologies (ONT) MinION platform for detecting and identifying Xf at species, subspecies, and sequence type (ST) level. Two workflows were developed: the first one provided a “shotgun” strategy, that is, exploring the possibility of detecting Xf within DNA extracted from plant samples. This allowed detection of Xf by direct DNA sequencing and identifying the subspecies only in samples with high bacterial levels. Nanopore amplicon sequencing was pursued as a second workflow. This consists of PCR amplification of a set of seven multilocus sequence typing (MLST) fragments, officially adopted for identifying Xf at type strain level, followed by Nanopore-sequencing of the amplicons and an ad hoc pipeline to generate MLST consensus calls. This combined approach, which takes only a few hours, allowed the detection and identification of Xf at ST level in plant material with low bacterial infection.     

Characterization and evaluation of chabazite- and mordenite-rich tuffs,and their mixtures as soil amendments and slow release fertilizers

In the present study, zeolite tuffs of diverse chemistry, mineralogy and origin were characterized and tested for their efficiency as slow release fertilizers (SRF) through a series of leaching tests. Mixtures of zeolite tuffs were created and tested as loamy soil additives, in order to evaluate any synergistic effect on their cation exchange capacity (CEC) and SRF properties. The studied materials were a chabazite-rich tuff (SOR), a mordenite-rich tuff (KIM), 3 mixtures of them (SOR/KIM 30/70, 50/50 and 70/30) and a commercial clinoptilolite-rich tuff (BLG). CEC (sodium acetate method) was 95.7 for BLG, 100.9 for KIM and 92.2 cmol kg^?1 for SOR, while their mixtures displayed intermediate values. SRF values vary, with the SOR/KIM 30/70 exhibiting the slowest NH₄⁺ release in 29 days (1.7%) compared to the control sample (19%). Zeolites promoted PO₄^?3 release, while their selectivity for Mg²⁺ and K⁺ was clearly affected by their different structure and chemistry. BLG exhibited the strongest selectivity for Mg²⁺, having the lowest release (39%). The results demonstrate that mixtures of zeolite tuffs could have a potential use in agricultural processes, by improving parameters like: chemistry, mineralogy, CEC and SRF efficiency, and resulting in the production of a competitive and functional soil additive.     

Aspergillus flavus transformation of glucosinolates to nitriles by an arylsulfatase and a β-thio-glucosidase

Biofumigation is a biocontrol method that uses volatile compounds to combat soil pathogens. We investigated a biofumigation process based on the green manure of Brassicaceae. These plants contain the glucosinolate-myrosinase system which releases inhibitory compounds such as isothiocyanate into the soil. However, the biocontrol effectiveness is often lower than expected, possibly due to microbial transformation of the isothiocyanates. In order to identify the possible function of microorganisms, their interaction with glucosinolates and glucosinolate-derived products was investigated. We report the ability of a soil isolate of Aspergillus flavus to grow in liquid culture and convert 2-propenyl and 2-phenylethyl glucosinolate and their desulfo-derivatives, to nitriles. This finding would suggest the existence of an arylsulfatase and a β-thio-glucosidase, different from myrosinase, which could direct glucosinolate conversion in soil towards nitriles rather than isothiocyanates. If confirmed in soil, our observations could at least partially explain the low concentrations of isothiocyanates after biofumigation.     

Assessment of Potential Nutrient Release from Phosphate Rock and Dolostone for Application in Acid Soils

Finding alternative local sources of plant nutrients is a practical, low-cost, and long-term strategy. In this study, laboratory column experiments were conducted in a completely randomized design to evaluate the feasibility of using phosphate rock and dolostone as fertilizers or acid-neutralizing agents for application in tropical acid soils. The dissolution rates of different particle-size fractions(0.063–0.25, 0.25–0.5, and 0.5–2 mm) of both rocks were studied by citric acid solution at p H 4 and 2 and water, with extraction times of 1, 3, 5, 7, 12, 24, 72, 144, 240, and 360 h. The results showed that the dissolution of both rocks depended on the particle size,leaching solution, and extraction time. The dissolution rate of rock-forming minerals increased as the specific surface area increased,corresponding to a decrease in particle size. In all cases, the release kinetics was characterized by two phases: 1) a first stage of rapid release that lasted 24 h and would ensure short-term nutrient release, and 2) a second stage of slow release after 24 h, representing the long-term nutrient release efficiency. Both rocks were suitable as slow-release fertilizers in strongly acid soils and would ensure the replenishment of P, Ca, and Mg. A combination of fine and medium particle-size fractions should be used to ensure high nutrient-release efficiency. Much work could remain to determine the overall impact of considerable amounts of fresh rocks in soils.     

Fish to 2030: The Role and Opportunity for Aquaculture

Seafood sector can contribute to the global food supply in an important way, and provide an important source of animal protein. Based on observed regional trends in seafood production and consumption and using a global, partial-equilibrium, multi-market model, this study investigates what the global seafood market may look like in 2030. The model projects that the total fish supply will increase from 154 million tons in 2011 to 186 million tons in 2030, with aquaculture entirely responsible for the increase. The fastest aquaculture growth is expected for tilapia and shrimp, while the largest expansion is expected in India, Latin America and Caribbean and Southeast Asia. Fast-growing seafood demand in China and elsewhere represents a critical opportunity for global fisheries and aquaculture to improve their management and achieve sustainable seafood economy.     

Differential Selection on Rhynchosporium secalis During Parasitic and Saprophytic Phases in the Barley Scald Disease Cycle

ABSTRACT Competition among eight Rhynchosporium secalis isolates was assessed during parasitic and saprophytic phases of the disease cycle in field experiments conducted at two locations and over two growing seasons. The eight isolates were inoculated onto six barley populations exhibiting varying degrees of resistance. Microsatellite analysis of 2,866 isolates recovered from the field experiments showed significant, and sometimes opposite, changes in the frequencies of R. secalis genotypes during the growing season (parasitic phase) and between growing seasons (saprophytic phase). Isolates that showed the most complex virulence in greenhouse seedling assays had the lowest fitness in the field experiment. Significant differences in isolate fitness were found on different host populations and in different environments. Selection coefficients were large, indicating that evolution can occur rapidly in field populations. Although inoculated isolates had the lowest overall fitness on the moderately resistant landrace cv. Arabi Aswad, some isolates were more virulent and consistently increased in frequency on this landrace, suggesting a risk of directional selection and possible erosion of the resistance following its widespread deployment in monoculture. These results provide the first direct evidence that R. secalis pathogen genotypes differ in their saprophytic ability and parasitic fitness under field conditions.     

罗马尼亚不同沙棘品种叶中甘树脂的提取

沙棘（Hippophae rhamnoides）是一种可广泛生长于欧亚地区,包括罗马尼亚的小果实灌木。沙棘具有药用及营养价值,同时可以改善区域的微气候环境。人们已经研究了罗马尼亚沙棘的生物化学组分及相关数据,所以我们分析了不同沙棘叶的甘树脂,一个重要的生化参数可以为植株的一项基本新陈代谢——光合作用提供信息。结果表明根据品种及特定环境因素的不同,产生了多样性。     

Improved Protocols for ELISA Determination of Gliadin in Glucose Syrups

Simple modifications of existing protocols for high‐sensitivity detection of gluten proteins by immunochemical methods allowed rapid and sensitive determination of residual gluten in highly viscous samples of glucose and maltose syrups obtained from processing wheat starch. Dilution of the original syrup to no less than 15–20% in solids allowed retention of gluten proteins in a soluble form so that ELISA determination of gliadin was possible without an extraction step in aqueous ethanol. An ultrafiltration step may be added to concentrate residual gluten proteins in the diluted syrup samples and allow a further increase in sensitivity. The results are relevant for quality assessment of wheat starch derived syrups as raw materials for use in gluten‐free foods for celiac individuals.