Functional investigation of a QTL affecting resistance to Haemonchus contortus in sheep

This study reports a functional characterization of a limited segment (QTL) of sheep chromosome 12 associated with resistance to the abomasal nematode Haemonchus contortus. The first objective was to validate the identified QTL through the comparison of genetically susceptible (N) and resistant (R) sheep produced from Martinik × Romane back-cross sheep. The R and N genotype groups were then experimentally infected with 10 000 H. contortus larvae and measured for FEC (every three days from 18 to 30 days post-challenge), haematocrit, worm burden and fertility. Significant differences in FEC and haematocrit drop were found between R and N sheep. In addition, the female worms recovered from R sheep were less fecund. The second step of the characterization was to investigate functional mechanisms associated with the QTL, thanks to a gene expression analysis performed on the abomasal mucosa and the abomasal lymph node. The gene expression level of a candidate gene lying within the QTL region (PAPP-A2) was measured. In addition, putative interactions between the chromosome segment under study and the top ten differentially expressed genes between resistant MBB and susceptible RMN sheep highlighted in a previous microarray experiment were investigated. We found an induction of Th-2 related cytokine genes expression in the abomasal mucosa of R sheep. Down-regulation of the PAPP-A2 gene expression was observed between naïve and challenged sheep although no differential expression was recorded between challenged R and N sheep. The genotyping of this limited region should contribute to the ability to predict the intrinsic resistance level of sheep.     

Reporting and advising on the effects of fishing

Scientists hold different views about environmental management. These views may drive their interest in the subject and help them to address a wide range of research issues, but they can also affect the ways in which research results are interpreted and reported. Studies that mix science and perspective can compromise public and scientific understanding of fishing effects, as perceived differences in evidence may actually reflect differences in interpretation. To improve the rigour of ‘fishing effects’ science, it would help if the benchmarks used to assess whether fishing effects ‘matter’ were always made explicit. These benchmarks might be the objectives set by the management authorities and/or a series of alternate objectives proposed and stated by the scientist. To demonstrate how the reported significance of fishing effects can depend on objectives, I use a simple model to predict the response of fish populations and communities to fishing. Fishing effects that would be reported as negative in relation to preservation or biodiversity objectives, such as declines in size, abundance and trophic level, occur at lower fishing intensities than those associated with meeting sustainability objectives for target species. When fishing pressure is so high that both conservation and fisheries objectives are not being met, the initial management actions to meet a range of objectives are likely to be compatible (e.g. reduce capacity, support alternate livelihoods).     

Duration and method of fixation affects the sensitivity of a digoxygenin-labelled DNA probe in detecting Kudoa thyrsites in Atlantic salmon skeletal muscle

The effect of fixative and duration of fixation on the sensitivity of a non-radioactive in situ hybridisation (ISH) protocol to detect Kudoa thyrsites small subunit ribosomal deoxyribonucleic acid (DNA) was investigated. Strong ISH reactions were detected in 5-μm sections of paraffin-embedded Atlantic salmon muscle after fixation for 1 day in Davidson's solution (DS). Reactions were weak following 3 or 5 days fixation and absent after 17 or 28 days fixation. Strong ISH reactions were observed after 1, 3 or 5 days fixation in neutral buffered formalin (NBF). The reactions were weak after 17 days and weak to nonexistent after 28 days of fixation. Reactions were consistently strong after fixation in 95% ethanol for up to 28 days. Some mature spores reacted weakly or not at all by ISH. Parasite DNA was weakly amplified by polymerase chain reaction (PCR) from paraffin-embedded muscle after 1 day of fixation in DS but not after fixation for 3, 5, 17 or 28 days. Amplified DNA was detected after fixation in NBF for 1, 3 and 5 days, but not after 17 or 28 days. In contrast, PCR consistently amplified DNA from paraffin-embedded, ethanol-fixed muscle. Caution should be used in the choice of fixative and duration of fixation when preserving Atlantic salmon tissues for molecular diagnosis of K. thyrsites.     

The impact of small-scale design interventions on the behaviour patterns of the users of an urban wasteland

Urban derelict space can form a valuable complementary element to the formal green spaces of a city: wastelands are often biologically diverse and their unregulated status can provoke innovative spatial activities by a wide range of users. Using the case of an urban brownfield in Tallinn, Estonia, this paper examines how such a space is used and evaluates the magnitude of the impact of minor design interventions – so-called urban acupuncture – on the activities carried out by the users. The study used field observations and behaviour mapping to compare the spatial pattern of the users before and after small design interventions. Although there was widespread use beforehand there was both an increase in use and a different pattern afterwards, which was clearly detectable from the composite behaviour maps of both arrangements, where users follow the properties of the particular environment. The small improvements tested showed the largest effect on the female and the older user groups, raising the number of overall visits and increasing the occurrence of active behaviour almost five times. The research demonstrates that small, inexpensive and possibly temporary interventions can have a major positive effect.     

Diagnosis and management of small-scale fisheries in developing countries

Small‐scale fisheries (SSF) make important but undervalued contributions to the economies of some of the world’s poorest countries. They also provide much of the animal protein needed by societies in which food security remains a pressing issue. Assessment and management of these fisheries is usually inadequate or absent and they continue to fall short of their potential as engines for development and social change. In this study, we bring together existing theory and methods to suggest a general scheme for diagnosing and managing SSF. This approach can be adapted to accommodate the diversity of these fisheries in the developing world. Many threats and solutions to the problems that beset SSF come from outside the domain of the fishery. Significant improvements in prospects for fisheries will require major changes in societal priorities and values, with consequent improvements in policy and governance. Changes in development policy and science reflect these imperatives but there remains a need for intra‐sectoral management that builds resilience and reduces vulnerability to those forces beyond the influence of small‐scale fishers.     

Tanjungides A and B: New Antitumoral Bromoindole Derived Compounds from Diazona cf formosa. Isolation and Total Synthesis

Tanjungides A (1) (Z isomer) and B (2) (E isomer), two novel dibrominated indole enamides, have been isolated from the tunicate Diazona cf formosa. Their structures were determined by spectroscopic methods including HRMS, and extensive 1D and 2D NMR. The stereochemistry of the cyclised cystine present in both compounds was determined by Marfey’s analysis after chemical degradation and hydrolysis. We also report the first total synthesis of these compounds using methyl 1H-indole-3-carboxylate as starting material and a linear sequence of 11 chemical steps. Tanjungides A and B exhibit significant cytotoxicity against human tumor cell lines.     

Plasma glucose-insulin relationship in chicken lines selected for high or low fasting glycaemia

1. Selected Fat or Lean chickens differ in their plasma glucose insulin relationship: in the fed or fasted state, Fat chickens have a lower glycaemia associated with normal or higher insulinaemia, depending upon the difference in glycaemia. 2. Conversely, chickens selected for low fasting glycaemia (LG) are fattier than their counterparts selected for high fasting glycaemia (HG), although the divergence in fat content is lower than in the Fat-Lean model. 3. The plasma glucose insulin relationship has been investigated in males of the HG and LG lines in the F4 and F5 generations. 4. A difference in glycaemia is suggested during embryonic development and was present at hatching and later on in the fasted or the fed state; insulinaemia did not differ. 5. During refeeding after an overnight fast, glycaemia differed between lines (except at intermediate times); cumulative food intake and insulinaemia were similar. 6. During a glucose tolerance test, glucose disposal rate and insulinaemia were rather similar. 7. Exogenous insulin exerted a very similar hypoglycaemic effect in both lines. 8. Other variables (body temperature, plasma concentrations of potassium and alpha NH2-non protein nitrogen) did not differ between HG and LG chickens. 9. In conclusion, HG and LG chickens do not exhibit any differences in glucose disposal rate, insulinaemia (in various nutritional conditions) or sensitivity to exogenous insulin, which contrasts with Fat or Lean chickens and may explain why HG and LG chickens have diverged to a lesser extent in fat content.     

The influence of the tracer injection–acquisition interval on the distribution of 99mTc-ECD in the brain of laboratory cats

Single-photon emission computed tomography (SPECT) can be used to study the regional distribution of the cerebral blood flow in the feline brain without interference of anesthetics. When the tracer, ^99mtechnetium-ethyl cysteinate dimer (^99mTc-ECD), is injected in the awake animal, the acquisition can be performed afterward under general anesthesia, whereas the tracer distribution still represents the regional cerebral blood flow (rCBF) in the awake animal. The aim of this study was to look at the in vivo stability of ^99mTc-ECD in the feline brain. For this purpose, 6 cats (n = 6) were used, and 3 serial acquisitions were performed starting at 40 (T40), 60 (T60), and 85 (T85) minutes after tracer injection. Total counts and perfusion indices (PIs), normalized to the total brain and to the cerebellum, were calculated. When T85 was compared with T40, total counts decreased, depending on the brain region, with 29% (left thalamus) to 51% (bulbus olfactorius). These regional differences in tracer clearance resulted in significantly altered PIs at T85 as compared with T40. This study shows that ^99mTc-ECD SPECT can be used in cats for studying the rCBF and that the clearance of ^99mTc-ECD in the feline brain is region dependent. As a result, the acquisition should be started between 40 and 60 minutes after tracer injection.     

Conservation implications of recent advances in biodiversity–functioning research

Studies have shown that increasing diversity has a positive influence on many ecosystem functions and services, for example, biomass productivity. However, most diversity–functioning studies have derived their conclusions (1) from considering only random species assemblages, (2) from small spatial scales – often micro- and mesocosm experiments, (3) from studying merely a single trophic level, and (4) studies from a small number of biomes dominate. Critics argue that these studies provide little basis to evaluate the consequences for biodiversity loss in the real world. Here we re-consider the latest research focusing on each limitation in turn to highlight the possible lessons for real-world conservation from recent biodiversity–ecosystem function (BEF) research. Tentative general lessons from recent research include: (1) the need to urgently forestall human-induced extinction (i.e., non-random extinction) over large areas, in order to avert large negative functional consequences which may be more pronounced at larger scales and (2) preserve relatively intact communities because biotic interactions across the multi-trophic levels may have a synergistic contribution to the overall functioning of a system. However, considering the complexity of the community dynamics of natural systems, we recommend using natural systems – and understanding the basic physiological features and ecological roles of the species within them – because they implicitly include realistic extinction process, trophic structures and spatial–temporal scales as a useful way of increasing the relevance of future BEF studies to conservation.     

Reptile diversity and rodent community structure across a political border

The peace treaty between Israel and Jordan found the Arava desert ecosystem, shared by the two countries, in a state of developmental dichotomy. On the Israeli side, vast lands have been settled and transformed into agricultural fields, while the Jordanian side has remained relatively intact and inhabited by only a few traditional and pastoral societies. This study examined the effect of different landscape units and proximity to agriculture on reptile diversity and rodent community structure on both sides of the border. It appears that in addition to the effect of proximity to agricultural fields and landscape habitat, the border between the two countries may play a role in determining diversity on the respective sides. While reptile abundance was generally higher on the Israeli side of the border, diversity was found to be significantly higher on the Jordanian side. Rodent community structure also revealed significant differences between the two sides of the border, mainly due to the more favorable conditions for psammophilic gerbils in Jordan. When comparing Western society with pastoral traditional society, it appears that development activities of the former have altered diversity and community structure of the taxa studied in the Arava. We suggest that in addition to the effects of habitats and human disturbances, such as modern agricultural practices, cultural differences between societies should be considered when conservation plans are developed for cross-border ecosystems.