Effects of crown length on indole acetic acid (IAA) amounts in cambial region tissues in lower and upper trunks of sugi cultivars (Cryptomeria japonica) in September

Indole acetic acid (IAA) was believed to be an important regulator in xylem formation in conifers. However, few studies have been done on the endogenous amount of IAA in cambial region tissues in sugi (Cryptomeria japonica) trees. In this study, we report the IAA amounts in the lower and upper trunk of mature sugi cultivars (Kumotoshi, Yaichi and Obiaka) in September, and the effects of growth traits on the IAA amounts. The effect of height position (lower or upper trunk) on IAA amounts was found to be larger than that of genetic variation (Kumotoshi, Yaichi or Obiaka) by two-way ANOVA. There was no significant interaction effect (genetic variation × height position). The IAA amounts of all trees varied from 3 to 42 ng/cm² at the lower trunk and 9 to 47 ng/cm² at the upper trunk. Crown length and distance from crown base had significant positive and negative effects on IAA amounts in the trunk of sugi cultivars, respectively. Distance from crown base had a larger effect on IAA amounts than crown length. In Yaichi, taller trees had larger IAA amounts at both the lower and upper trunk.     

Differentially methylated CpG sites related to fertility in Japanese Black bull spermatozoa: epigenetic biomarker candidates to predict sire conception rate

For semen suppliers, predicting the low fertility of service bull candidates before artificial insemination would help prevent economic loss; however, predicting bull fertility through in vitro assessment of semen is yet to be established. In the present study, we focused on the methylated CpG sites of sperm nuclear DNA and examined methylation levels to screen new biomarkers for predicting bull fertility. In frozen-thawed semen samples collected from Japanese Black bulls, for which the sire conception rate (SCR) was recorded, the methylation level of each CpG site was analyzed using human methylation microarray. According to regression analysis, 143 CpG sites related to SCR were significantly differentially methylated. Whole genome bisulfite sequence data were obtained from three semen samples and the differentially methylated regions (DMRs) that included the target CpG sites selected by human methylation microarray were confirmed. Using combined bisulfite restriction analysis, fertility-related methylation changes were detected in 10 DMRs. With the exception of one DMR, the methylation levels of these DMRs were significantly different between groups with high fertility (> 50%) and low fertility (< 40%). From multiple regression analysis of methylation levels and SCR, three DMRs were selected that could effectively predict bull fertility. We suggest that these fertility-related differences in spermatozoal methylation levels could be new epigenetic biomarkers for predicting bull fertility.     

Soil organic matter status of Chernozem soil in North Kazakhstan: effects of summer fallow

In North Kazakhstan there is concern about the degradation of Chernozem soil and agricultural sustainability by the inclusion and frequency of summer fallows in crop rotations in terms of their influence on the changes of soil organic matter (SOM) quality and quantity. We examined five fallow-wheat (Triticum aestivum L.) cropping systems with different frequencies of the fallow phase in Chernozem soil of North Kazakhstan; continuous wheat (CW), 6-y rotation (6R), 4-y rotation (4R), 2-y rotation (2R) and continuous fallow (CF). Soil samples were collected from the two phases of each rotation, pre- and post-fallow, and analyzed for potentially mineralizable C (PMC) and N (PMN), ‘light fraction’ organic matter (LF-OM), C (LF-C) and N (LF-N). Potentially mineralizable C was inversely proportional to the frequency of fallow and was highest in CW. Mineral N (min-N) and PMN were more responsive to rotation phase than other indices of SOM. Mineral N was higher in the post-fallow phase while PMN was higher in the pre-fallow phase. Light fraction organic matter was negatively correlated to the frequency of fallow and was higher in the pre-fallow than in the post-fallow phase in a rotation. The results suggested that the yearly input of plant residue in a less frequently fallowed system built up more PMC, whereas PMN was closely correlated to recent inputs of substrate added with plant residues. We conclude that a frequent fallow system may deplete SOM via accelerated mineralization. Also that LF-OM, PMC and PMN are more sensitive to detect subtle changes in SOM quality than total SOM. Our results may provide prediction of SOM response to fallow frequency in wheat-based rotation systems in Chernozem soils of semi-arid regions.     

The phenotypic characteristics and relational database for Vietnamese native pig populations

Although there are a number of Vietnamese native pig (VnP) populations, some are on the verge of extinction, and therefore adequate management and conservation are necessary. In this study, we conducted a field survey of VnP populations and analyzed interrelationships among their characteristics. We also established a relational database for management of field data on these populations. For data collection, we conducted interviews with farmers and visual inspection of 32 VnP populations in 22 provinces of Vietnam, as well as taking photographs of individual animals. Data on the characteristics of VnP populations were subjected to multiple correspondence analysis (MCA). For establishment of the database, normalization and table partitioning were performed to eliminate redundancy and ensure consistency of the collected data items. Passport data, characteristics data, and image data were collected from a total of 1,918 VnPs and entered as a normalized table. Upon MCA, most of the populations were not separated from each other, but the Mong Cai, O Lam, and Chu Prong populations were separated from the other populations. Thus, we have constructed a relational database from comprehensive information on the characteristics of VnP populations.     

Immunolocalization of <Emphasis Type="Italic">Pepper mild mottle virus</Emphasis> in developing seeds and seedlings of <Emphasis Type="Italic">Capsicum annuum</Emphasis>

The location of Pepper mild mottle virus (PMMoV) within seeds as they developed on inoculated seedlings of pepper (Capsicum annuum) was followed over time by detecting the viral coat protein using immunofluorescence microscopy. Seedlings were inoculated with PMMoV when the flower buds on the first and second branching nodes were in bloom. Fluorescence indicating the presence of PMMoV was first observed around immature seeds and placentas in the ovaries on the fourth branching node at 20 days post-anthesis (20 DPA), which corresponded to 39 days post-inoculation (39 DPI). The area with fluorescence gradually expanded from the placenta into the integument and the parenchyma, and finally reached the tip of the immature seeds by 34 DPA (53 DPI). The embryo or endosperm beyond the endothelium never fluoresced during the experiment [i.e., ending at 81 DPA (102 DPI)]. For visualizing viral routes of invasion from seeds into new seedlings, PMMoV-infected C. annuum seeds that were heterozygous for the L ³ tobamovirus-resistance gene were sown in soil at 30°C. After ~2 weeks, the cotyledon developed virally induced necrosis. These findings shed light on the infection cycle of PMMoV through vertical transmission in C. annuum.