Porcine respiratory disease complex after the introduction of H1N1/2009 influenza virus in Brazil

From 2009 to 2015, 74 lungs from suckling (6.8%), nursing (70.3%), fattening (20.3%) pigs and pregnant sows (2.7%) with respiratory signs from pig farms in Southern Brazil were submitted to a diagnostic laboratory for necropsy and/or histologic examination and screening for respiratory agents by RT‐qPCR, immunohistochemistry (IHC), virus isolation (VI) and subtyping for influenza A virus (IAV), IHC and nested PCR for Mycoplasma hyopneumoniae (Mhyo), PCR for porcine circovirus 2 (PCV2), RT‐qPCR for porcine reproductive and respiratory syndrome virus (PRRSV) and bacterial culture. All lung samples were positive for IAV using RT‐qPCR. Seventy‐two lungs had histologic lesions associated with acute to subacute IAV infection characterized by necrotizing bronchiolitis/bronchitis or bronchointerstitial pneumonia with lymphocytic peribronchiolitis and bronchiolar/bronchial hyperplasia, respectively. Forty‐nine lungs (66.2%) were positive by IHC for IAV nucleoprotein. The H1N1/2009 was the most common subtype and the only IAV detected in 58.1% of lungs, followed by H1N2 (9.5%) and H3N2 (6.8%). Coinfection of IAV and Mhyo was seen in 23 (31%) cases. Although 14.9% of the lungs were positive for PCV2 using PCR, no suggestive lesions of PCV2 disease were observed. Porcine reproductive and respiratory syndrome virus (PRRSV) was not detected, consistent with the PRRS‐free status of Brazil. Secondary bacterial infections (8/38) were associated with suppurative bronchopneumonia and/or pleuritis. Primary IAV infection with Mhyo coinfection was the most common agents found in porcine respiratory disease complex (PRDC) in pigs in Southern Brazil.     

Studies on the Intracellular Ca2+ Concentration of Frozen–Thawed Dog Spermatozoa: Influence of Equex from Different Sources, Two Thawing Diluents and Post-thaw Incubation in Capacitating Conditions

The addition of 0.5% (v/v) of Equex STM Paste (Nova Chemical Sales, Scituate Inc., MA, USA), whose active ingredient is sodium dodecyl sulphate (SDS), to a Tris–egg yolk extender was demonstrated to improve the longevity of frozen–thawed dog spermatozoa during in vitro incubation at 38°C. The aim of the first experiment was to compare the effects of two SDS‐containing compounds, Equex STM Paste and Equex Pasta (Minitüb, Tiefenbach, Germany), when added to a Tris–egg yolk based extender, on the post‐thaw longevity of dog spermatozoa, as well as on the intracellular Ca²⁺ concentration of spermatozoa, during post‐thaw incubation at 38°C. The post‐thaw sperm survival and longevity, as well as the quality of the sperm movement, were significantly better when using Equex STM Paste. Such prolonged sperm longevity, however, was associated to a higher intracellular Ca²⁺ concentration in a large subpopulation of the live spermatozoa. A second experiment was aimed to evaluate the effects of sperm dilution immediately post‐thaw with a Tris buffer containing glucose or fructose. The two Tris buffers were no different for any of the sperm parameters studied. The aim of a third experiment was to evaluate the sperm longevity, motility patterns and intracellular Ca²⁺ concentration of cryopreserved dog spermatozoa during post‐thaw incubation in capacitating conditions [canine capacitating medium (CCM) with or without 5 μg/ml of heparin]. Heparin had no significant effects on any of the sperm parameters evaluated. During the first 8 h of incubation, the majority of the live spermatozoa had a high intracellular Ca²⁺ content. However, after 8–10 h of incubation, it had significantly declined. The highest proportion of fast motile sperm, and the highest curvilinear velocity, average path velocity and amplitude of lateral head displacement for the total motile sperm were observed during the 2–4‐h incubation period. It was concluded that: (a) the addition of 0.5% (v/v) of Equex STM Paste to a Tris–egg yolk based extender significantly improved the post‐thaw longevity of dog spermatozoa, but the same concentration of Equex Pasta had no significant beneficial effects; (b) sperm dilution after thawing with a Tris buffer containing glucose or fructose made no difference in post‐thaw sperm longevity; (c) the addition of 5 μg/ml of heparin to CCM had no significant capacitating effects on frozen–thawed dog spermatozoa.     

Bait worms: a valuable and important fishery with implications for fisheries and conservation management

Bait is an integral part of coastal life, but is perceived as a low‐value resource as fisheries are data‐limited, locally focussed and largely unregulated even though the ecological impacts of collection are considerable. An empirical assessment of three UK‐based ragworm fisheries combined with an analysis of published literature has produced the first global assessment of polychaete bait fisheries. The five most expensive (retail price per kg) marine species sold on the global fisheries market are polychaetes (Glycera dibranchiata, Diopatra aciculata, Nereis (Alitta) virens, Arenicola defodiens and Marphysa sanguinea). We estimate that 1600 t of N. virens per annum (worth £52 million) are landed in the UK with approximately 121 000 tonnes of polychaetes collected globally valued at £5.9 billion. Using remote closed circuit television (CCTV) cameras to monitor collectors, activity at local sites is considerable with a mean of 3.14 collectors per tide (day and night) at one site and individuals digging for up to 3 h per tide, although intensity differed seasonally and between sites. Collectors removed on average 1.4 kg of N. virens per person per hour, walking a considerable distance across the intertidal sediment to reach areas that were usually already dug. The implications of these human activity and biomass removal levels are explored in the context of fisheries and conservation management. At local, regional and national scales, polychaete bait fisheries are highly valuable, extract significant biomass and have considerable impacts; therefore, they urgently require governance equivalent to other fisheries.     

Indian land use in the Raposa–Serra do Sol Reserve,Roraima, Amazonia,Brazil: Physical and chemical attributes of a soil catena developed from mafic rocks under shifting cultivation

Native Indians (Macuxi, Ingarikó and Uapishana) in the Raposa–Serra do Sol Indian Reserve have been cultivating forest soils since the early XIX century, especially those derived from dolerite sills, scattered within the quartzitic dominated landscape. Representative soils developed from mafic rocks under Indian shifting cultivation in northeastern Roraima, were submitted to physical, chemical and mineralogical analyses to characterize their pedogenetic characteristics and infer on their status under native Indian shifting cultivation. The soil profiles were classified as: Orthic Ebanic Chernosol (USDA Mollisol), vertic Orthic Ebanic Chernosol (USDA Mollisol), Eutrophic Haplic Cambisol (USDA mollic Inceptisol) and Eutrophic Red Nitosol (USDA Red Alfisol), which occupy, respectively, lower slopes and less dissected terrains (Mollisols) and steeper slopes (Alfisols). The first two are eutrophic, and not typical of the Amazon region. Their mineralogies range from kaolinite/goethite rich upland, deeply weathered Nitosol, to 2:1 clay rich downslope Chernosols. The latter has primary minerals in the silt fraction and high CEC resulting in high fertility. The Nitosols reveal a process of severe topsoil loss, due to widespread sheet erosion from deforestation and shifting cultivation. Chemical analyses showed varied soil fertility, ranging from high levels in the Chernosols to a low level in the non-cultivated Nitosol. Phosphorus levels are limited in all soils, despite the high fertility. The Chernosols located in lowland, flat areas close to the valley floor are more suitable environments for the slash-and-burn native farming system. In the Chernosols and Cambisols, the clay activity below the value limit for this class indicates a current natural process of increasing leaching. The more weathered and eroded Nitosol showed low Fe-oxalate and Si-oxalate levels. Micronutrients such as total zinc and copper, decreased with depth and weathering. The Nitosols showed the highest phosphate adsorption levels (1.574 mg g^− 1 of soil) which can be attributed to its clayey texture. Chernosols showed overall lower P adsorption values, increasing with depth. All soils under native Indian cultivation display signs of physical and chemical degradation due to shortened fallow under intense land use pressure in the Raposa–Serra do Sol Reserve.     

Heavy Metals Contamination in Century-Old Manmade Technosols of Hope Bay, Antarctic Peninsula

Technosols are anthropogenic soils that may be strongly impacted by heavy metal deposition, which have not yet been described in Antarctica. In this paper, we present a chemical study of what is supposedly the oldest manmade soil from Antarctic Peninsula, developed in the vicinity of Trinity House and Nordenskjold Hut at Hope Bay. Chemical and morphological soil attributes indicate that a former ornithogenic site (penguin rookery) was further subjected to human disturbance, following local exploration since 1903. We detected very high amounts of heavy metals such as Cd, Cu, Pb, and Zn. For the most impacted site, pseudototal concentrations of these elements reach 47, 2,082, 19,381, and 5,225 mg kg^?1, respectively. Enrichment factors were calculated using Zr as reference element, and high values were found for these contaminated sites, qualifying some of them as extremely polluted. Also, both the mobilizable and mobile fraction of Cd and Pb indicate the need of intervention in the affected area. These findings are all consistent with the human impacts and strong contamination. Strong positive correlation between the pseudototal concentrations of Cd, Cu, Mn, Ni, Pb, and Zn indicates a similar source of pollution. These soils may represent the oldest Technosols in Antarctic Continent.     

Marine bird response to forage fish during winter in subarctic bays

Despite the importance of understanding marine bird response to prey fish, few studies have examined this relationship during winter. Over a 5‐year period, we conducted synoptic marine bird and hydroacoustic forage fish surveys during early (November) and late (March) winter to characterize the factors influencing marine bird and forage fish dynamics at two spatial scales (fish school and bay) within subarctic bays of coastal Alaska, USA. Over 40% of observed marine birds were associated with a fish school (within 150 m of a fish school), although only 20% of fish schools were associated with birds. Seasonally, we recorded significantly more schools during early winter. The marine bird community also shifted from being comprised primarily of marbled murrelets (Brachyramphus marmoratus) and large gulls (Larus spp.) in early winter to common murres (Uria aalge) in late winter. At the school level, marine birds were more likely to be associated with shallow fish schools within 500 m of shore and in smaller prey patches. At the bay level, gull abundance was positively associated with the total number of fish schools recorded, while diving birds were more abundant when fish schools were higher in the water column, in shallower bottom depths, and in areas with more eel grass habitat. Our results indicate the importance of temporal, habitat, and fish school variables as drivers of marine bird presence and abundance, underscoring the complexity of predator–prey dynamics in the marine environment during winter.     

Gold nanoelectrodes of varied size: transition to molecule-like charging

A transition from metal-like double-layer capacitive charging to redox-like charging was observed in electrochemical ensemble Coulomb staircase experiments on solutions of gold nanoparticles of varied core size. The monodisperse gold nanoparticles are stabilized by short-chain alkanethiolate monolayers and have 8 to 38 kilodaltons core mass (1.1 to 1.9 nanometers in diameter). Larger cores display Coulomb staircase responses consistent with double-layer charging of metal-electrolyte interfaces, whereas smaller core nanoparticles exhibit redox chemical character, including a large central gap. The change in behavior is consistent with new near-infrared spectroscopic data showing an emerging gap between the highest occupied and lowest unoccupied orbitals of 0.4 to 0.9 electron volt.     

Glycosylation and Deamidation of Rice Endosperm Protein for Improved Solubility and Emulsifying Properties

Rice endosperm protein was prepared by alkali-extraction method and subsequently modified by controlled glycosylation (RP_Glu, RP_XG), deamidation (RP_DA), and enzymatic hydrolysis by alcalase (RP_Alc) methods. The RP_Glu and RP_XG were prepared by Maillard type glycosylation with D-glucose and xanthan gum, respectively. The glycosylation improved the emulsion activity (0.721) and stability (26.8 min) of the protein but did not show a substantial improvement in solubility (39.7%). The rice protein modified by controlled alkali-deamidation (RP_DA) showed highest solubility (68%), emulsion activity (0.776), and emulsion stability (24 min) among the three protein modification methods evaluated in this study. The alcalase treatment to 1.8% DH (RP_Alc) slightly improved solubility (33%), emulsion activity (0.468), and emulsion stability (17.5 min) compared with unmodified rice protein (RP), which had 18% solubility, 0.266 emulsion activity, and 14.7 min emulsion stability. The glycosylation and deamidation methods were more effective than the controlled enzymatic hydrolysis by alcalase in improving solubility and emulsifying properties of rice endosperm protein. Glycosylated and deamidated rice endosperm proteins can find application in enhancing emulsifying properties in suitable products.