Evidence for multiple origins of Wolbachia infection in springtails

Bacteria of the genus Wolbachia (Rickettsiae) are endosymbionts found in many species of invertebrates. The traditional division of Wolbachia lines into four supergroups has recently been challenged with the finding of a fifth supergroup. Until now, this E supergroup exists of a single host species of the order Collembola (springtails) and is hypothesized to form a ‘missing link’ between Wolbachia lines in higher arthropods and nematodes. We have sequenced the 16S rDNA, the ftsZ and the wsp genes of a Wolbachia lineage present in the sexually reproducing collembolan Orchesella cincta. We tested the hypothesis on the origin of Wolbachia in Collembola by adding this new Wolbachia lineage and a lineage found in the collembolan Mesophorura macrochaeta to the Wolbachia phylogenetic tree. The addition of these two species clearly shows that Wolbachia is not monophyletic in Collembola. We conclude that the origin of Wolbachia in Collembola is a combination of vertical and horizontal transfer between coexisting species.     

Overwinter soil denitrification activity and mineral nitrogen pools as affected by management practices

During freeze-thaw events, biophysical changes occurring in soils can affect processes such as mineralization, nitrification and denitrification which control inorganic N balances in agro-ecosystems. To evaluate the impact of these climatic events on soil biochemical properties, a study was conducted comparing soil denitrification enzyme activity (DEA), dissolved organic C (DOC) and inorganic N levels before and after the winter season in plots under: (1) continuous corn (Zea mays L.) (CC) with annual chisel plow and disking, (2) corn-soybean (Glycine max L.) (CS) rotation with chisel plow every other year prior to planting soybean, and (3) corn-soybean-wheat (Triticum aestivum L.)/hairy vetch (Vicia villosa Roth) (CSW-V) with ridge tillage during the corn and soybean crops, and dairy manure application during the corn year. Soil cores were collected in late autumn and immediately after spring thaw at 0-5, 5-10, 10-15, and 15-30 cm depths. Regardless of management practices, freeze-thaw events resulted in significant (2-10 times) increases in NH₄⁺-N, NO₃^--N (P<0.001) and DOC (P<0.01) levels at all soil depths. Following freeze-thaw, DEA remained unchanged in the 5-30 cm depth but dropped significantly (P<0.01) in the 0-5 cm soil layer. In that layer, soils which had been chisel plowed during the previous growing season lost 78-84% of the DEA recorded during the fall, whereas in the plots amended with manure during the previous season, the loss of activity was 40-45%. These data indicate that frequent tillage, compared with manure additions, is more conducive to overwinter loss of DEA in surface layers of soils subject to freeze-thaw cycles.     

The inheritance of a basal branching type in guar

Summary Eight different genotypes of the F₁ hybrids between Oriental × Asiatic lily (Lilium) hybrids (2n = 2x = 24) were treated with nitrous oxide (N₂O) gas under pressure for 24 and 48 hours. At the time of treatment, all plants possessed early meiotic stages in the anthers of the oldest flower buds. The mature flowers from treated plants were monitored for fertility through pollen germination in vitro as well as by using them in crosses with diploid Asiatic hybrids (2n = 2x = 24) both as male and female parents. In five out of the eight genotypes of OA hybrids there was evidence for the production of 2n pollen which germinated in vitro from either one or both treatments. The 2n pollen from three genotypes was successfully used in crosses. In two cases, the treated plants were successfully used as female parents which indicated the formation of 2n (or 2x) egg cells. From an analysis of 41 sexual polyploid progenies obtained from N₂O treated plants it was shown that they were all euploids consisting of 34 triploids (2n = 3x = 36) and seven tetraploids (2n = 4x = 48). A detailed cytological analysis of 12 progeny plants through genomic in situ hybridization (GISH) proved that N₂O had induced first division restitution gametes in most cases and in two cases they produced gametes through indeterminate meiotic restitution. There was evidence for intergenomic recombination in three cases.     

Beyond ‘lognormal versus gamma’: discrimination among error distributions for generalized linear models

The process of model selection includes making an assumption about the distribution of ‘errors’ about the mean response. Generalized linear models (GLMs) offer considerable flexibility in this regard. However, graphical methods for identifying potential error distributions can fail to discriminate among sets of candidate error distributions. I examine an information-theoretic approach to this issue, which ranks candidate models (error distributions) using Akaike's information criterion (AIC). I evaluate the effectiveness of this technique using Monte Carlo simulation by generating pseudorandom data from five skewed distributions: lognormal, gamma, Weibull, log-logistic, and inverse Gaussian. I then fit each data set under all five distributional assumptions, and examine how well AIC identifies the distribution that generated the data. On the basis of the simulations, I suggest that AIC is effective at identifying the data-generating distribution, given moderate to large sample sizes. I then fit four candidate models to data drawn from a mixture of four distributions with common expectations and coefficients of variation (CVs). AIC did not show strong support for a particular candidate model given small samples of ‘mixed’ data, although larger samples selected the gamma distribution for CVs of 0.5 and 1.0, and the Weibull distribution for CVs of 1.5 and 2.0. Finally, I apply this technique in a GLM setting to several fisheries-independent and -dependent data sets to select the error distribution that is best supported by the data. Twenty-one out of 24 fisheries data sets examined showed strong support for one of the five candidate error distributions and the remaining moderate support for two.     

Local knowledge surveys with small-scale fishers indicate challenges to sawfish conservation in southern Papua New Guinea

1. Sawfish (Pristidae) are considered to be among the most threatened families of elasmobranch (sharks and rays). There is a need to gather information on the status of poorly known sawfish populations to assist in global recovery initiatives.
2. This study used interviews with local fishers to investigate the presence of sawfish in southern Papua New Guinea (PNG) and their interactions with and uses and values for small-scale fishers.
3. A range of sawfish size classes are still encountered throughout southern PNG, while juvenile largetooth sawfish Pristis pristis were additionally reported in the freshwater reaches of all rivers surveyed. Reports of large size classes in estuarine and marine environments provide an optimistic outlook that sawfish populations persist throughout southern PNG.
4. Most fishers that catch sawfish retain them for various uses including consumption and for the sale of meat, fins and occasionally rostra. Negative population trends including decreases in catch frequency and/or size classes were reported by 66% of interviewees, with the largest declines being reported in the Kikori River. The increasing technical capacity of small-scale fishers, their preference for gillnetting and the emerging market for teleost swim bladder (a high-value fishery product) present a major ongoing threat to sawfish in southern PNG. Furthermore, the tendency of fishers to kill or remove rostra from entangled sawfish results in high fishing mortality regardless of any use by the fisher.
5. This study indicates that considerable community engagement will be necessary to manifest any legislative actions or increased enforcement on international trade regulations for sawfish in PNG. This is due to traditional land and waterway ownership values throughout PNG and the local perception of sawfish as a traditional food resource rather than an animal of intrinsic biodiversity value as perceived by global conservationists. Future research should consider exploring culturally appropriate conservation initiatives that are likely to achieve engagement and participation from local fishers.

     

Polyunsaturated fatty acid metabolism in cultured fish cells: Incorporation and metabolism of (n-3) and (n-6) series acids by Atlantic salmon (Salmo salar) cells

The incorporation and metabolism of (n-3) and (n-6) polyunsaturated fatty acids (PUFA) supplemented to growing cultures were studied in Atlantic salmon (AS) cells. A fatty acid concentration of 25 μM considerably altered the fatty acid composition of AS cells without increasing the neutral lipid content of the cells or inducing the production of cytoplasmic lipid droplets. Whereas Δ6 and Δ5 desaturase activities were significantly expressed in AS cells, Δ4 desaturase activity was very low. Both the Δ6 desaturase activity and the Δ5 desaturase activity showed some preference for (n-3) PUFA.     

The hepato-renal syndrome of cultured turbot. Its effect on a 2-year trial of farm reared turbot (Scophthalmus maximus)

The development of hepatic and renal lesions in cultured turbot on two semi-commercial diets is analysed. The results indicate that the conditions are indeed linked and there-fore the term “hepato-renal syndrome” is valid, and that dietetic variation influences the incidence.     

Microbial biomass in soils under different tillage and crop rotation systems

A long-term study on the effect of different crop rotations [soybean/wheat, S/W; maize/wheat, M/W or cotton/wheat, C/W] and tillage regimes [no-tillage (NT) or conventional tillage (CT)] on microbial biomass and other soil properties is reported. The experiment was established in 1976 in southern Brazil as a split-plot experimental design in three replications. Soil samples were taken in 1997 and 1998 at 0- to 5-, 5- to 10- and 10- to 20-cm depths and evaluated for microbial biomass C, N, P and S by direct extraction methods. The NT system showed increases of 103%, 54%, 36%, and 44% for microbial biomass C, N, P, and C_mic:C_org percentage, respectively at the 0- to 5-cm depth. NT systems also increased the C to N:S:P ratios. These results provide evidence that tillage or crop rotation affect microbial immobilization of soil nutrients. The larger amount of C immobilized in microbial biomass suggests that soil organic matter under NT systems provides higher levels of more labile C than CT systems.