Bartonella quintana in Ethiopian lice

Head and clothing lice from Jimma, Ethiopia were investigated for pathogenic bacteria. Genomic DNA from pools of lice was subjected to PCR analysis for Bartonella spp., Borrelia spp. Coxiella burnetii, Rickettsia spp. and Yersinia pestis. All 102 lice pools were negative for the afore mentioned pathogens, with the exception of Bartonella species found among 6 of 65 (9.2%) head lice pools and1 of 33 clothing lice pools. Identification was achieved by sequencing the ribosomal intragenic transcribed spacer region (ITS), revealing all to be Bartonella quintana. Although established as a clothing louse-borne infection, typically causing chronic bacteraemia, trench fever, bacillary angiomatosis and endocarditis, this has only been rarely reported among head lice. The higher numbers of infected head lice pools compared with clothing lice suggests their competence for maintaining this infection within Ethiopia.     

BCG vaccination of neonatal calves: potential roles for innate immune cells in the induction of protective immunity

Bovine tuberculosis is a disease of increasing incidence in the UK causing major economic losses and with significant impact on bovine and, potentially human health: the causative agent Mycobacterium bovis is a zoonotic pathogen. Neonatal vaccination with the attenuated M. bovis Bacille Calmette Guerin (BCG) vaccine confers a significant degree of protection in cattle, and is a widely used control strategy for human TB. The adaptive immune system is relatively immature in neonates and increased numbers of innate effector cells present in young animals and human infants may compensate for this, enabling effective immune responses to vaccination. Natural killer cells and subsets of γδ TCR+ T lymphocytes secrete high levels of interferon gamma and can interact with antigen presenting cells to promote both innate and adaptive immune responses. These cell populations may be pivotal in determining immune bias following neonatal vaccination with BCG.     

Assessing the impact of interfering organic matter on soil metaproteomic workflow

Soil organic matter (SOM) is biologically, chemically, and physically complex. As a major store of nutrients within the soil, it plays an important role in nutrient provision to plants. An enhanced understanding of SOM utilisation processes could underpin better fertiliser management for plant growth, with reduced environmental losses. Metaproteomics can allow the characterisation of protein profiles and could help gain insights into SOM microbial decomposition mechanisms. Here, we applied three different extraction methods to two soil types to recover SOM with different characteristics. Specifically, water-extractable organic matter, mineral-associated organic matter and protein-bound organic matter were targeted with the aim to investigate the metaproteome enriched in those extractions. As a proof-of-concept, replicated extracts from one soil were further analysed for peptide identification using liquid chromatography followed by tandem mass spectrometry. We employed a framework for mining mass spectra for both peptide assignment and fragmentation pattern characterisation. Different extracts were found to exhibit contrasting total protein and humic substance content for the two soils investigated. Overall, water extracts displayed the lowest humic substance content (in both soils) and the highest number of peptide identifications (in the soil investigated) with the most frequent peptide hits associated with diverse substrate/ligand binding proteins of Proteobacteria and derived taxa. Our framework also highlighted a strong peptidic signal in unassigned and unmatched spectra, information that is currently not captured by the pipelines employed in this study. Taken together, this work points to specific areas for optimisation in chromatography and mass spectrometry to adequately characterise SOM-associated metaproteomes.     

The Impact of Hardwood Line-Planting on Tree and Amphibian Diversity in a Secondary Subtropical Wet Forest of Southeast Puerto Rico

The impact on tree and amphibian diversity of line-planting of tropical hardwoods—mahogany (Swietenia macrophylla × S. mahagoni) and mahoe (Hibiscus elatus)—was studied in a secondary subtropical wet forest of Puerto Rico. Common coqui (Eleutherodactylus coqui) and melodious coqui (E. wightmanae) are the most frequent frog species; forest coqui (E. portoricensis) is less abundant. Although relative abundance means were slightly greater in the undisturbed forest and during the wet season, differences were not statistically significant suggesting that line-planting did not significantly affect amphibian diversity. The line-planted areas had a slightly higher, but not statistically significant diversity, richness, and evenness of tree species than the unplanted forest. Multi-response permutation procedure (MRPP) showed statistically significant community composition differences between line-planting and control plot trees (T = ?5.89, A = .86; p < .001). But mean similarity among plots in both the line-planted and control plots was relatively low at less than 50% of shared species, indicating high diversity of vegetation in the overall forest area. Canopy cover by tree species greater than 3 cm in dbh was much higher in the undisturbed forest but this difference may be reduced as the young line-planted hardwoods mature. Forest enrichment through line-planting of valuable timber species in secondary subtropical wet forest does not significantly affect tree diversity.     

The Warrumbungle Post‐Fire Recovery Project—raising the profile of soils

The impacts of a wildfire and subsequent rainfall event in 2013 in the Warrumbungle National Park in New South Wales, Australia were examined in a project designed to provide information on post‐fire recovery expectations and options to land managers. A coherent suite of sub‐projects was implemented, including soil mapping, and studies on soil organic carbon (SOC) and nitrogen (N), erosion rates, groundcover recovery and stream responses. It was found that the loss of SOC and N increased with fire severity, with the greatest losses from severely burnt sandstone ridges. Approximately 2.4 million t of SOC and ~74,000 t of N were lost from soil to a depth of 10 cm across the 56,290 ha affected. Soil loss from slopes during the subsequent rainfall event was modelled up to 25 t ha^?1, compared to a long‐term mean annual soil loss of 1.06 t ha^?1 year^?1. Groundcover averages generally increased after the fire until spring 2015, by which time rates of soil loss returned to near pre‐fire levels. Streams were filled with sand to bank full levels after the fire and rainfall. Rainfall events in 2015–2016 shifted creek systems into a major erosive phase, with incision through the post‐fire sandy bedload deposits, an erosive phase likely related to loss of topsoils over much of the catchment. The effectiveness of the research was secured by a close engagement with park managers in issue identification and a communications programme. Management outcomes flowing from the research included installation of erosion control works, redesign of access and monitoring of key mass movement hazard areas.     

Identifying phenological functional types in savanna trees

Savannas are notable for the varied patterns of leaf display in the tree layer. Characterising this variation, and assessing the range of phenological strategies apparent in savanna ecosystems will be helpful for understanding savanna tree life-histories and their response to global change. We recorded leaf phenological metrics on a monthly basis for 28 woody species for one year in a semi-arid savanna at Nylsvley Nature Reserve, South Africa. Using these metrics four plant functional types were described: (1) evergreen species, which retained full canopy throughout the year; (2) semi-evergreen species, which lost a significant amount of canopy during the dry season, but not less than 60%; (3) obligate deciduous species in which the canopy was leafless for about 3 months during the dry season; and (4) rain-stimulated species, in which canopy flushing was driven by rainfall patterns. Of the 28 species, 18% were evergreen, 18% obligate deciduous, 32% semi-evergreen and 32% were rain-stimulated species. These results confirm that phenological strategies are variable in savannas, and highlight that there are numerous cues controlling the timing of leaf out and leaf drop. By defining distinct phenological strategies we can predict which plant functional types will have phenological cues that will be vulnerable to shifting climates.     

A survey of annual pesticide usage during the control of sheep ectoparasites in Northern Ireland, 1997

This is the third survey of control practices for ectoparasites on sheep farms in Northern Ireland, providing data comparative to those recorded in previous surveys in 1981 and 1988. Data relating to all aspects of ectoparasite control were collected from 210 farms representing 4% of the total sheep population. Quantitative data have been adjusted to provide accurate estimates of total pesticide usage. Since the previous survey in 1988, the number of sheep farms in Northern Ireland has increased by 10% to 11 692 with a consequent 39% increase in sheep population to 2.9 million. Despite this level of expansion, the total quantity of organophosphorus compounds used for ectoparasite control has remained approximately constant at 7–8 tonnes. The report considers that compulsory sheep‐dipping, prescribed since 1970 and revoked in 1993, impacted significantly on subsequent ectoparasite control practices and consequent pesticide usage. During 1997, approximately 20% of sheep farmers relied on alternative methods to control ectoparasites, including injectable formulations of avermectins and pour‐on formulations of insect growth regulators and pyrethroids. Dipping formulations containing pyrethroid compounds, which accounted for <1% of treatments in 1988, increased to 9% in 1997. Previously, regulatory sheep‐dipping periods were specified during the autumn months, which tended to increase dipping frequency. The majority of farmers dipping sheep during the summer strictly for blowfly maggot (Diptera: Calliphoridae) control were required to perform additional compulsory sheep‐dipping during the autumn. Withdrawal of compulsory sheep‐dipping has allowed farmers to synchronise dipping practices to control the major ectoparasites of sheep at a single dipping occasion. An estimated 7.5 × 10⁶ litres of surplus dipwash required disposal and there were approximately equal numbers of farmers disposing dipwash immediately after sheep‐dipping or on occasions up to and including subsequent dipping. The decline in the number of farmers who allowed dipwash to run‐off into soakaways or surrounding soil observed in 1988 continued in 1997. The majority of farmers used tractor‐operated pumps to dispose of dipwash into slurry tanks for subsequent disposal onto permanent pasture. © Crown copyright 2000. Reproduced with the permission of Her Majesty's Stationery Office. Published for SCI by John Wiley & Sons, Ltd.     

One Step Thermochromic Pigment Printing and Ag NPs Antibacterial Functional Finishing of Cotton and Cotton/PET Fabrics

One step thermochromic pigment printing and antibacterial functionality of cotton (100 %) and cotton/polyester blend (50/50 %) were demonstrated in this study. The improvement in antimicrobial activity against G+ve (Bacillus cereus) and G-ve (E. coli), and pigment printability were achieved by inclusion of Ag-NPs (30 g/kg) into pigment printing paste followed by printing and microwave curing at 700 W for 5 min. Modes of interactions were proposed, and surface modification was also confirmed by SEM and EDX analysis that proved the presence of Ag-NPs in cotton and cotton/ polyester blended samples. The results indicated that the colour fastness to wash and rubbing was excellent, the surface roughness reduced, and exhibited good antibacterial activity against Bacillus cereus and E. coli bacteria.