Mineral‐nitrogen and phosphorus leaching from vegetable gardens in Niamey,Niger

Urban and periurban agriculture (UPA) contributes significantly to meeting increasing food demand of rapidly growing urban populations in West African cities. The often intensive high‐input vegetable production within UPA results in large positive nutrient balances, being presumably linked to strong nutrient leaching which needs quantification. This study aimed at estimating leaching losses of mineral N and P in three representative urban gardens of Niamey, Niger, using ion‐exchange‐resin cartridges installed below the crop rooting zone at 0.6 m soil depth. In 2007, a year with below‐average annual rainfall (425 mm as compared to 542 mm), mean leaching of mineral N amounted to 5.9 and 7.3 kg N ha^–1 for two gardens with > 80% sand fraction and only 2.2 kg N ha^–1 for a garden with 40% silt and clay. Apparent annual P leaching was 0.7 kg P ha^–1 in all three gardens. Additional multiannual studies are necessary to assess the effect of inter‐ and intraannual variation in precipitation on nutrient leaching in intensive UPA vegetable production of semiarid West Africa.     

Application of biochar to soil and N2O emissions: potential effects of blending fast‐pyrolysis biochar with anaerobically digested slurry

Soil applications of recalcitrant biochar offer the possibility of mitigating climate change effects through long‐term carbon sequestration and potentially also by reducing emissions of the potent greenhouse gas nitrous oxide (N₂O). This laboratory study examined the effect of combining a fast‐pyrolysis biochar at small (1% by mass) and large (3%) concentrations with anaerobically digested slurry on soil N₂O and carbon dioxide (CO₂) emissions over a period of 55 days. The results showed that fast‐pyrolysis biochar applied on its own increased N₂O emissions from soil. However, when biochar was applied together with slurry, the larger biochar concentration decreased N₂O emissions by 47%, relative to those from the slurry treatment with the smaller biochar concentration. Reduced N₂O emissions coincided with enhanced soil microbial activity and immobilization of nitrogen. A combined application of biochar and anaerobic digested slurry could therefore be beneficial for cropping systems in terms of soil nitrogen retention while concurrently mitigating N₂O fluxes and sequestering carbon in soil.     

Linking past land use, recent disturbance, and dispersal mechanism to forest composition

Many areas in north-eastern North America were historically cleared for agriculture and subsequently abandoned. The resulting woodlots are exposed to varying degrees of recent disturbance. This paper examines the contributions of land use history and recent disturbance on the species richness and community composition of wooded areas in an agricultural landscape. Woodlots were categorized according to land clearance history, past grazing, and recent disturbance, such as the presence of roads or selective cutting. Vegetation surveys resulted in the identification of 250 herbaceous plant species, 44 of which were classified as exotic. While no influence of recent disturbance on community composition was detected, past land use influenced species richness for all plant groups examined. General linear models indicated that herbaceous, native, and forest species richness was highest in historically partially cleared sites; while exotic and invasive species richness was greatest in historically cleared sites. Non-metric multi-dimensional scaling (NMS) ordination was used to identify associations between community assemblage, land use history, and dispersal mechanism. The two axes of the NMS ordination explained 79.2% of the variation in the data, and indicated that woodlots completely cleared in the past were associated with wind dispersed species indicative of disturbed habitats. In contrast, historically uncleared sites contained short-distance dispersed species indicative of rich woods. Although no effects of recent disturbance were detected, the long lived impacts of past land use and the increase of exotic and invasive species in historically cleared indicate that undisturbed woodlots should be considered of highest conservation importance.     

Social learning in fishes: a review

Animals acquire skills and knowledge from other animals, and fish are no exception. There is now strong experimental evidence that many species of fish exhibit social learning and traditional behaviours. Here, we review the literature pertaining to social learning in fish, focusing on (i) antipredator behaviour, (ii) migration and orientation, (iii) foraging, (iv) mate choice and (v) eavesdropping.     

The use of T‐DNA tagging to isolate mutants of Colletotrichum gloeosporioides and Colletotrichum acutatum with reduced virulence against Hevea brasiliensis

Agrobacterium tumefaciens‐mediated transformation (ATMT) is being increasingly recognized as an effective insertional mutagenesis tool in studies of filamentous fungi for gene discovery and functional analysis. We developed and optimized ATMT for 2 Colletotrichum species, Colletotrichum gloeosporioides and Colletotrichum acutatum, the causative agents of Colletotrichum leaf disease in rubber trees in Southern China. A. tumefaciens strain AGL‐1 carrying an ILV1 gene and a green fluorescent protein gene were used to transform the conidia of these 2 Colletotrichum species. The transformation efficiency was correlated with the co‐cultivation duration and bacterial cell concentrations, which reached 300–400 transformants per 1 × 10⁶ conidia after optimization. Southern blot analysis indicated that about 60.0% of the C. gloeosporioides transformants and 46.2% of the C. acutatum transformants had a single copy of T‐DNA in their genomes. Fungal genomic DNA segments flanking the T‐DNA were identified in the transformants through thermal asymmetrical interlaced polymerase chain reaction followed by sequencing. The flanking sequences from 4 C. acutatum and 7 C. gloeosporioides transformants showed moderate or weak homology to the NCBI database entries. Some sequences matching those reported virulence‐related genes. The results suggest that the T‐DNA inserted mutants banks constructed are useful for the discovery of new or important genes and to elucidate their function in the 2 Colletotrichum species.     

Brenneria spp. and Rahnella victoriana associated with acute oak decline symptoms on oak and hornbeam in Iran

Decline diseases of forest trees are complex syndromes not attributable to single causal factors. In Iran, symptoms of decline disease have been observed in a number of native forest species including Quercus castaneifolia (chestnut‐leaved oak), Q. brantii (Persian oak) and Carpinus betulus (hornbeam). The symptoms are prevalent in the northern forests and the Zagros mountain forests. There are parallels between the disease in Iran and acute oak decline (AOD) reported in the UK, specifically the presence of weeping cankers, which have been attributed to a polybacterial complex wherein Brenneria goodwinii is considered a key necrogen. Based on the AOD symptomatology, and as a first step towards discovering potential causal agents of the stem weeping symptoms of affected trees in Iran, necrotic tissues were tested primarily for the presence of B. goodwinii. Symptomatic Q. castaneifolia and C. betulus from the Mazandaran Province and symptomatic Q. brantii from Kohgiluyeh and Boyerahmad Province were sampled. Isolation and culture on a selective medium yielded uniform bacterial colonies. Isolates were characterized using phenotypic and genotypic (DNA sequencing) tests. The isolates were phenotypically identical to members of Pectobacteriaceae and Yersiniaceae, specifically Brenneria and Rahnella spp. The nucleotide sequences of the 16S rRNA and housekeeping genes gyrB, infB and atpD (MLSA) amplified via PCR demonstrated that the isolates from the trees in Iran were indeed B. goodwinii, B. roseae subsp. roseae, Rahnella victoriana and an unknown species of Brenneria. Most bacteria isolated from non‐symptomatic trees were Gram‐positive, and Pseudomonas spp. were dominant, but bacterial species isolated from the diseased trees were not detected in healthy trees. Hypersensitivity response tests were positive, but inoculation on saplings was more variable with internal necrosis developing only once in the test period. Therefore, further testing is required. This is the first report of the incidence of B. goodwinii, B. roseae subsp. roseae, R. victoriana and Brenneria sp. associated with acute oak decline‐like symptoms on Q. castaneifolia, Q. brantii and C. betulus across the western forests of Iran and in the world.     

Effect of dothistroma needle blight on needle and shoot lengths

The needles of pine trees are indicative of the overall health of the tree, and their length is affected by many factors. This study describes the effect of high levels of pathogen infection on lengths of both needles and shoots. Dothistroma septosporum is an important foliar pathogen of pines causing necrosis and premature defoliation with successive years of high infection leading to growth reduction and in extreme cases tree death. Corsican pine trees with all foliage infected by D. septosporum had needles of primary, secondary and tertiary shoots reduced by 31.8%, 44.0% and 64.2%, respectively, compared to non‐infected trees. Needle lengths were reduced both in the upper and lower portions of the canopy, with a greater reduction lower in the canopy. Trees with high levels of infection had shorter shoots in the upper canopy with fewer, shorter needles on these shoots compared to trees with low levels of infection. The results demonstrate the substantial negative effect on needle and shoot lengths of trees with high levels of D. septosporum infection, comparable to factors such as water and nutrient availability known to have a strong influence on these parameters. The reductions in length reduce the photosynthetic capacity of the tree and compound the immediate reductions caused by necrosis and premature defoliation. These effects on needle and shoot lengths contribute to the reductions in volume growth of affected trees and, moreover, are longer lasting than the immediate effects of necrosis and premature defoliation.     

High‐throughput Cryopreservation of Sperm from Sex‐reversed Southern Flounder,Paralichthys lethostigma

The Southern flounder, Paralichthys lethostigma, is a valuable aquaculture fish with established markets in the USA. All‐female production in this species is an important technology for aquaculture because the females usually have body sizes twice those of males at the same age, and sex‐reversed males (genotypic XX neomales) are used for all‐female production by crossing with genetically normal females. However, sperm volume from the neomales is usually small (<0.5 mL) and limits their application for all‐female fish production. Cryopreservation of sperm from these sex‐reversed neomales will provide access on demand with increased efficiency to extend the application of neomales. The goal of this study was to develop a protocol for cryopreservation of sperm from the Southern flounder by using an automated high‐throughput processing system. The objectives were to: (1) determine the effect of osmolality on activation of sperm motility; (2) evaluate the effect of extender solutions on sperm motility capacity; (3) evaluate the acute toxicity of cryoprotectants (dimethyl sulfoxide [DMSO], propylene glycol, and polyethylene glycol) on sperm motility, and (4) estimate the effect of cooling rate on sperm cryopreservation and post‐thaw fertilization. Sperm motility was activated when osmolality was 400 mOsmol/kg or higher. Of the three extender buffers tested, HEPES4‐(2‐hydroxyethyl)‐1‐piperazineethanesulfonic acid (HEPES) at 300 mOsmol/kg resulted in better protection for sperm motility than did Hanks' balanced salt solution and Mounib solution at 300 mOsmol/kg during 7 d of refrigerated storage. After 30 min equilibration with the cryoprotectant of 15% DMSO, sperm motility was 24 ± 21% (fresh sperm motility without any cryoprotectants was 42%). After cooling at a rate of 20 C/min, post‐thaw sperm motility was 8 ± 5% and fertilization was 63 ± 40% evaluated at the 32–64 cell stage (5 × 10⁵ sperm per egg). Overall, a protocol was developed for sperm cryopreservation in the Southern flounder with high‐throughput processing, which provides a tool to preserve the valuable genetic resources from neomale flounders, and enables germplasm repository development for the Southern flounder.