Trawling for cephalopods off the Portuguese coast—Fleet dynamics and landings composition

Fleet dynamics was addressed for three cephalopod taxa of commercial interest, the squid Loligo vulgaris, the octopuses Octopus vulgaris and Eledone cirrhosa, and the cuttlefish Sepia officinalis, for 48 trawlers of the fish trawling fleet. Landing profiles (LP) were identified based on the species composition of the landings using hierarchical cluster analysis. Four out of a total of 12 different LP were related to cephalopods and other species associated with them.The effects on the landing proportions of a number of variables, year, season and vessel, are analysed for each of the species studied using generalized linear models (GLM). The factor “vessel”, including an ensemble of technical characteristics as well as the abilities of individual skippers, explained most of the model deviance, strongly reinforcing the existence of a fleet component dedicated to catch cephalopods. However, time also explains much of the variation found in the data.Seasonal alternation between landings of octopodidae and cuttlefish was observed within a small group of old trawlers operating mainly off the south coast, following the abundance cycles of these species. For a larger group of more modern trawlers, operating off the western coast, inter-annual shift between octopus and squid was found, together with a well marked seasonal pattern between the catches of cephalopods and horse mackerel.Spatial patterns of activity were identified using vessel monitoring system (VMS) data available for trawlers in Portugal, demonstrating the existence of cephalopod targeting strategies in Portuguese fish trawling activities.     

云南元阳哈尼梯田水稻地方品种月亮谷的遗传变异分析

 为了揭示云南元阳哈尼梯田持续大面积种植的水稻地方品种月亮谷的遗传变异,利用20个表型性状和48个SSR标记,对采自元阳哈尼梯田11个村寨的98份月亮谷和8份对照品种进行分析。结果显示,98份月亮谷的质量性状变异系数较小;数量性状变异系数较大,变异系数范围为2.55%~24.90%;48个标记共检测出114个等位变异,平均为2.38个,变幅为1~4个;有效等位变异为87.65个,平均为1.83个,变幅为1~3.02;Nei遗传多样性（I）指数平均为0.64。表型聚类将月亮谷与对照品种分成两大类,所有月亮谷为一类,8个对照品种为另一类;SSR聚类则将所有月亮谷与4份籼型对照品种聚为一大类,4份粳型对照品种单独为一大类;分子方差分析（AMOVA）表明,月亮谷村寨之间变异（67.18%）大于村寨内（37.82%）。11个村寨月亮谷可以分成5个居群,这5个类群与其村寨间地理位置的距离相关,相邻村寨之间月亮谷遗传距离小,遗传相似度高。月亮谷这种特殊的遗传变异是由于独特的哈尼梯田及其传统文化长期作用的结果,月亮谷可作为优异基因资源进一步发掘和利用。     

Glu A1和 Glu D1位点高分子量谷蛋白亚基共同缺失对弱筋小麦品质的影响

为了研究高分子量谷蛋白亚基(HMWGS)缺失对小麦品质的影响,以 GluA1和 GluD1位点HMWGS共同缺失材料2GS041410作供体亲本,以弱筋小麦品种扬麦13和扬麦18作轮回亲本进行回交,构建不同遗传背景的BC¹F³和BC²F³群体,测定受体、供体亲本的品质,以及回交群体BC¹F³和BC²F³中 GluA1和 GluD1位点HMWGS共同缺失纯合单株及两位点均正常表达纯合单株的品质。结果表明,供体2GS041410具有较低的SDS沉降值、较短的面团形成时间和稳定时间;在BC¹F³和BC²F³中, GluA1和 GluD1位点HMWGS共同缺失对蛋白含量影响不显著,但可显著或极显著降低SDS沉降值和水溶剂保持力(SRC)。 GluA1和 GluD1位点HMWGS双缺失在弱筋小麦品质育种中具有一定的应用价值。     

Soybean molasses as an organic carbon source in the farming of Litopenaeus vannamei (Boone, 1931) in a biofloc system

Soybean molasses was evaluated as a partial replacement for sugarcane molasses as a carbon source for biofloc development in the superintensive culture of Pacific white shrimp (Litopenaeus vannamei). A 50‐day study was conducted with juvenile (3.2 g) shrimp stocked in 16 800 L tanks at a stocking density of 250 shrimp m^?3. Control of total ammonia concentration was performed by the addition of combined mixtures of soybean and sugarcane molasses to the culture water. Three different molasses treatments were evaluated using different soybean‐to‐sugarcane molasses ratios: 15–85%, 38–62% and 60–40% respectively. The control group was treated only with sugarcane molasses. Water quality, chlorophyll a concentration, heterotrophic bacterial load, Vibrio spp. concentration and zootechnical indexes were all evaluated. Total ammonia concentration was controlled by heterotrophic and chemotrophic pathways. Biofloc formation, as quantified by measuring the total suspended solids, was not altered. The Vibrio spp. concentration showed a significant reduction in treatments with soybean‐to‐sugarcane molasses ratios of 38–62% and 60–40%. All combined mixtures of soybean and sugarcane molasses could maintain water quality and productivity in the superintensive culture of L. vannamei using the biofloc system. Thus, the potential use of a residue from agroindustry as a carbon source in a biofloc culture is demonstrated.     

Influence of Salinity in the Bioavailability of Zn in Sediments of the Gulf of Cádiz (Spain)

This study assesses the effect of salinity in bioavailability and toxicity of Zn by means of laboratory bioassays by observing contamination in both sediment and water, accumulation of Zn in biological tissues, and histopathological damage in the gills and guts tissues of Ruditapes philippinarum clams, which were exposed to different types of sediments from the Gulf of Cádiz (SW Spain) as well as two dilutions of toxic mud coming from an accidental mining spill. With this objective, the coefficients of distribution (K _D) for Zn between overlying water and sediments were calculated, the histopathological frequencies in the tissues of the gills and guts of clams were determined, and the biota-sediment bioaccumulation factors as well as the bioaccumulation factors were quantified in the different stations. Results showed that the greatest histopathological damages appeared when the salinity values decreased. Statistical results showed that salinity was inversely correlated with histopathological damage (p?<?0.01) for the lesion index for gills. The most outstanding results were observed in the two dilutions of toxic mud (0.3% and 7.9%) at a salinity value of 10. Salinity was inversely correlated with the concentration of Zn in biological tissues (p?<?0.05) and inversely correlated with the concentration of Zn in water and sediment. Zn mobilization to the overlying water is produced when salinity values decrease.     

Short-term changes in nitrogen availability, gas fluxes (CO2, NO, N2O) and microbial biomass after tillage during pasture re-establishment in Rondônia, Brazil

Anthropogenic conversion of primary forest to pasture for cattle production is still frequent in the Amazon Basin. Practices adopted by ranchers to restore productivity to degraded pasture have the potential to alter soil N availability and N gas losses from soils. We examined short-term (35 days) effects of tillage prior to pasture re-establishment on soil N availability, CO₂, NO and N₂O fluxes and microbial biomass C and N under degraded pasture at Nova Vida ranch, Rondônia, Brazilian Amazon. We collected soil samples and measured gas fluxes in tilled and control (non tilled pasture) 12 times at equally spaced intervals during October 2001 to quantify the effect of tillage. Maximum soil NH₄⁺ and NO₃⁻ pools were 13.2 and 6.3 kg N ha⁻¹ respectively after tillage compared to 0.24 and 6.3 kg N ha⁻¹ in the control. Carbon dioxide flux ranged from 118 to 181 mg C–CO₂ m² h⁻¹ in the control (non-tilled) and from 110 to 235 mg C–CO₂ m² h⁻¹ when tilled. Microbial biomass C varied from 365 to 461 μg g⁻¹ in the control and from 248 to 535 μg g⁻¹ when tilled. The values for N₂O fluxes ranged from 1.22 to 96.9 μg N m⁻² h⁻¹ in the tilled plots with a maximum 3 days after the second tilling. Variability in NO flux in the control and when tilled was consistent with previous measures of NO emissions from pasture at Nova Vida. When tilled, the NO/N₂O ratio remained <1 after the first tilling suggesting that denitrification dominated N cycling. The effects of tilling on microbial parameters were less clear, except for a decrease in qCO₂ and an increase in microbial biomass C/N immediately after tilling. Our results suggest that restoration of degraded pastures with tillage will lead to less C matter, at least initially. Further long-term research is needed.     

Soil fertility properties on Agave angustifolia Haw. plantations

This study examined the variations in soil physical, chemical and biological properties from Agave angustifolia fields in three sites with different topographic conditions (valley, hill and mountain), in Oaxaca, Mexico, associated with the tillage systems, disk ploughing (DP), animal drawn ploughing (ADP) and minimum tillage (MT), respectively. Plant ages were 1.5–3.5 years (class 1), 3.6–5.5 years (class 2) and 5.6–7.5 years (class 3). Soil samples were taken at two soil depths (0–20 and 21–40 cm) from plots of 4000 m² within each site and plant age classes, during the spring of 2005. The main changes in soil properties were found in the mountain site. Soil bulk density (2.0 g cm⁻³), cone penetration resistance (CPR) (3.96 MPa), 0.7 and 1.0 mm water stable aggregates (WSA) (28.3 g kg⁻¹ and 102.2 g kg⁻¹, respectively) were higher in the mountain site than in the hill and valley fields. This result is consistent with the rocky substrate beneath the shallow soil. Soil organic carbon (SOC) (23.9 g kg⁻¹), available N (23.1 mg kg⁻¹) and soil microbial biomass carbon (SMBC) (969.6 μg g⁻¹) at the mountain site showed the highest values, suggesting that MT practiced in this topographic condition favours the organic matter accumulation and biological activity. Soil microbial biomass carbon and SOC seem to be the soil properties that were mainly affected by the sites and soil management associated with them. For the three sites, SOC, P_Olsen, available N, exchangeable Na⁺ and SMBC were higher at 0–20 cm depth than at 21–40 cm depth within each site. Exchangeable Ca²⁺ and K⁺, P_Olsen and CPR increased with plant age. In contrast, available N decreased. Soil chemical properties were more affected by the age of the plant than physical and biological properties. Results reported here represent a reference of the fertility properties of soils cultivated with A. angustifolia, which could be used in further studies focused on management and tillage systems.     

Fungal biomass in pastures increases with age and reduced N input

Previous studies have shown that soil fungal biomass increases towards more natural, mature systems. Shifts to a fungal-based soil food web have previously been observed with abandonment of agricultural fields and extensification of agriculture. In a previous field experiment we found increased fungal biomass with reduced N fertilisation. Here, we explore relationships between fungi, bacteria, N input and grassland age on real dairy farms in the Netherlands. We hypothesised that also in pastures that are still in production there is a negative relationship between fungal biomass and fertilisation, and that fungal biomass increases with grassland age in pastures that are still in production. We expected the fungal/bacterial biomass ratio to show the same responses, as this ratio has often been used as an indicator for management changes. We sampled 48 pastures from eight organic dairy farms. Sites differed in age and fertilisation rate. We determined fungal and bacterial biomass, as well as ergosterol (a fungal biomarker). Fungal and bacterial biomass and ergosterol, showed a negative relationship with N application rate, and correlated positively with organic matter percentage. In old pastures, fungal biomass and ergosterol were higher than in younger pastures. Because bacterial biomass responded in the same way as fungal biomass, the F/B ratio remained constant, and can therefore—in our data set—not be used as an indicator for changing management. We conclude that the changes in fungal and bacterial biomass were driven by changes in organic matter quality and quantity. The negative relationship we found between N application rate and fungal biomass adds to earlier work and confirms the presence of this relationship in pastures with relatively small differences in management intensities. Earlier studies on shifts in fungal biomass focused on ex-agricultural fields or restoration projects. Here we show that fungal biomass is also higher in older agricultural pastures.     

Inheritance of Aluminum Tolerance and its Effects on Grain Yield and Grain Quality in Oats (Avena Sativa L.)

Summary Aluminum toxicity due to the cation Al⁺³ is a major factor limiting yields in acid soils. Wide genetic variability to aluminum tolerance is found in oat genotypes. The objectives of this study were to determine the number of genes controlling aluminum tolerance in oats and to verify if any detrimental effects were present of the aluminum tolerance genes on grain yield and grain quality in Al⁺³free soils. Aluminum tolerance was estimated as the average regrowth of the main root after exposure to toxic levels of Al⁺³ in a hydroponic solution under controlled conditions. The number of genes controlling that trait was estimated from the distribution of the average root regrowth frequencies in a population of 333 recombinant inbred lines (RIL's) in generations F_5:6 and F_5:7. The effects on grain yield and grain quality were assessed in a subpopulation of 162 RIL's chosen based on their aluminum tolerance response. Aluminum tolerance in the evaluated population was controlled by one dominant major gene with the tolerant genotypes carying Al _a Al _a and the sensitive ones al _a al _a alleles. No detrimental effects of the Al _a allele on grain yield or grain quality were detected.Part of the Master of Science dissertation of the first author     

The inheritance of chemical phenotype in <Emphasis Type="Italic">Cannabis sativa</Emphasis> L. (III): variation in cannabichromene proportion

The mechanism that controls the proportion of cannabichromene (CBC), a potential pharmaceutical, in the cannabinoid fraction of Cannabis sativa L. is explored. As with tetrahydrocannabinol (THC) and cannabidiol (CBD), CBC is an enzymatic conversion product of the precursor cannabigerol (CBG). CBC is reported to dominate the cannabinoid fraction of juveniles and to decline with maturation. This ontogeny was confirmed in inbred lines with different mature chemotypes. A consistent CBC presence was found in early leaves from a diverse clone collection, suggesting that CBC synthase is encoded by a fixed locus. Morphological variants possessing a ‘prolonged juvenile chemotype’ (PJC), a substantial proportion of CBC persisting up to maturity, are presented. PJC is associated with a reduced presence of floral bracts, bracteoles, and capitate-stalked trichomes. Genetic factors causing these features were independent of the allelic chemotype locus B that was previously postulated and regulates THC and CBD synthesis and CBG accumulation. In contrast to previously described Cannabis chemotypes, the cannabinoid composition of PJCs showed plasticity in that reduced light levels increased the CBC proportion. The ability of PJC plants to enable the production of pharmaceutical raw material with high CBC purity is demonstrated.