Understanding the economic and farming practices driving species selection in aquaculture within the Mymensingh division of Bangladesh

Aquaculture is a major supplier of animal protein for Bangladesh’s population, and the Mymensingh division is a major contributor to finfish aquaculture, producing 43% of the total pond pangasius and 9% of the total amount of tilapia (figures from 2018). We conducted a finfish farmer survey covering Netrokona, Jamalpur and Mymensingh districts to understand current finfish farming practices and identify factors that drive farmers in their species choice between pangasius or tilapia cultivation. We found that most finfish farmers in Mymensingh are experienced practitioners and practise polyculture with a range of stocking densities for each species. Using an economic model of polyculture practice, we have shown that over a production cycle, pangasius gain body mass at a rate nearly 4 times greater than that for tilapia, resulting in substantially larger revenues and providing a strong incentive for their culture. High levels of tilapia aquaculture likely persist due to their short production cycle and an associated decreased economic risk due to crop loss from disease, both factors providing a strong incentive for their culture. Our findings also indicate production yield differences through different species selection in polyculture systems. For example, co-culturing pangasius, tilapia and carp together was less productive than co-culture of pangasius with tilapia. Furthermore, higher yields of tilapia were obtained when co-cultured with carp compared with pangasius, the reasons for which are not known and warrant further investigation. Our study uses information provided by finfish farmers to produce a useful guide on fish species choices to maximise production yields, and therefore food production, from their ponds.

     

Cytotoxic Effects of Loperamide Hydrochloride on Canine Cancer Cells

Loperamide is a peripheral opiate agonist that can cause apoptosis and G2/M arrest in human cancer cell lines and may sensitize cells to chemotherapy. The objectives of this study were to investigate the effects of loperamide on viability, apoptosis and cell cycle kinetics in canine cancer cells and to establish whether the drug sensitizes cells to doxorubicin. Cell viability was assessed using Alamar Blue. Cell death and cell cycle were studied using flow cytometry with 7-Aminoactinomycin-D (7-AAD) and propidium iodide (PI), respectively. Loperamide decreased cell viability in a dose-dependent fashion and was most effective against canine osteosarcoma cells. In all cell lines, it induced a dose and time dependent apoptosis and resulted in accumulation in G0/G1. When co-incubated with doxorubicin, loperamide induced a synergistic cell kill in canine carcinoma cells. Investigation is warranted into the role of loperamide in the treatment of canine cancer.     

Immunity,safety and protection of an Adenovirus 5 prime - Modified Vaccinia virus Ankara boost subunit vaccine against Mycobacterium avium subspecies paratuberculosis infection in calves

Vaccination is the most cost effective control measure for Johne’s disease caused by Mycobacterium avium subspecies paratuberculosis (MAP) but currently available whole cell killed formulations have limited efficacy and are incompatible with the diagnosis of bovine tuberculosis by tuberculin skin test. We have evaluated the utility of a viral delivery regimen of non-replicative human Adenovirus 5 and Modified Vaccinia virus Ankara recombinant for early entry MAP specific antigens (HAV) to show protection against challenge in a calf model and extensively screened for differential immunological markers associated with protection. We have shown that HAV vaccination was well tolerated, could be detected using a differentiation of infected and vaccinated animals (DIVA) test, showed no cross-reactivity with tuberculin and provided a degree of protection against challenge evidenced by a lack of faecal shedding in vaccinated animals that persisted throughout the 7 month infection period. Calves given HAV vaccination had significant priming and boosting of MAP derived antigen (PPD-J) specific CD4⁺, CD8⁺ IFN-γ producing T-cell populations and, upon challenge, developed early specific Th17 related immune responses, enhanced IFN-γ responses and retained a high MAP killing capacity in blood. During later phases post MAP challenge, PPD-J antigen specific IFN-γ and Th17 responses in HAV vaccinated animals corresponded with improvements in peripheral bacteraemia. By contrast a lack of IFN-γ, induction of FoxP3+ T cells and increased IL-1β and IL-10 secretion were indicative of progressive infection in Sham vaccinated animals. We conclude that HAV vaccination shows excellent promise as a new tool for improving control of MAP infection in cattle.

Electronic supplementary material

The online version of this article (doi:10.1186/s13567-014-0112-9) contains supplementary material, which is available to authorized users.     

A generalized linear mixed model analysis of a multi-vessel fishery resource survey

A generalized linear mixed model (GLMM) that treats year and spatial cell as fixed effects while treating vessel as a random effect is used to examine fishing power among chartered industry-based vessels and a research trawler, the FRV Miller Freeman, for bottom trawl surveys on the upper continental slope of U.S. West coast. A Bernoulli distribution is used to model the probability of a non-zero haul and the gamma distribution to model the non-zero catch rates of four groundfish species. The use of vessel as a random effect allows the data for the various vessels to be combined and a single continuous time-series of biomass indices to be developed for stock assessment purposes. The GLMMs fit the data reasonably well. Among the different models examined, the GLMM incorporating a random vessel × year effect had the smallest ΔAIC and was thus chosen as the best model. Also, estimated random effects coefficients associated with the industry-based vessels and the FRV Miller Freeman for each year suggests that these vessels can be assumed to be from a common random effects distribution. These results suggest that combining data from the chartered industry-based vessels and from the research trawler may be appropriate to develop indices of abundance for stock assessment purposes. Finally, an evaluation of variances associated with abundance indices from the different models indicate that analyzing these data as a fixed effect GLM may underestimate the level of variability due to ignoring the grouped nature of tows within vessels. As such, use of a mixed model approach with vessel as a random effect is a reasonable approach to developing abundance indices and their variances.     

Differential distribution and response to experimental sexual maturation of two forms of brain gonadotropin-releasing hormone (GnRH) in the European eel,Anguilla anguilla

Using specific radioimmunoassays for the two GnRH molecular forms present in the European eel, Anguilla anguilla, (mGnRH and cGnRH II), we compared their distributions in the pituitary and different parts of the brain of female silver eels, as well as the modifications of their levels in experimentally matured female eels (treated with carp pituitary extract). In control eels, mGnRH levels were higher than cGnRH II levels in the pituitary, olfactory lobes and telencephalon, di- and mesencephalon, while the opposite was found in the posterior part of the brain (met- and myelencephalon). Experimental sexual maturation of the gonads significantly increased mGnRH levels in the pituitary and anterior parts of the brain; such a positive effect was not observed on the low cGnRH II levels, which were, in contrast, reduced. These data indicate that the positive feedback of gonadal hormones on GnRH, that we previously demonstrated, would specifically affect the mGnRH form. The differential distribution and control of mGnRH and cGnRH II suggest that these two forms have different physiological roles in the eel. The large increase in mGnRH during sexual maturation suggests the prime implication of this form in the neuroendocrine control of reproduction.     

A classification and evaluation of Irish water beetle assemblages

1. Modern records of 165 species of wetland beetle (Haliplidae, Hygrobiidae, Noteridae, Dytiscidae, Gyrinidae, Georissidae, Hydrochidae, Helophoridae, Hydrophilidae, Hydraenidae, Scirtidae, Dryopidae, Elmidae, Chrysomelidae, Curculionidae) were assembled for analysis. 2. Two hundred and eighty nine modern lists of seven or more species of water beetle from sites in Ireland were subjected to multivariate analysis. 3. Ten assemblage types were identified using TWINSPAN. Habitats typical of these assemblages are: A. deep rivers; B. rivers with riffles; C. puddles; D. canals and lakes with rich vegetation; E. ponds and ditches; F. turloughs; G. natural, minerotrophic fens; H. base-flushed cutover bogs; I. peat bogs; J. montane flushes. The distribution of these types is discussed. 4. Ordination of site data by DECORANA indicated that the important environmental variables dictating water beetle assemblage type in Ireland were: flow; water permanence; exposure; type of substratum. Acidity could not be isolated as a determinant, except within the analysis of assemblage types conducted using TWINSPAN. DECORANA isolated one brackish site as an outlier but salinity was not otherwise a major factor, probably because few brackish sites were included in the analysis. 5. The number of modern records for each species was used to provide a provisional set of species-quality scores. A simple rationale was devised to weight these scores in favour of relict species and against elusive species, species with short-lived adults and species primarily associated with man-made habitats. 6. The average species-quality score per site and the number of species recorded were used to rank sites within each TWINSPAN end-group. The most diverse sites with the highest quality were some turloughs, rich fens and base-flushed peat cutting complexes. Some montane lakes and flushes with relatively few species had high species-quality scores.     

Growth, survival and fillet composition of paddlefish, Polyodon spathula (Walbaum) fed commercial trout or catfish feeds

Paddlefish are gaining increasing acceptance as an aquaculture species worldwide. Commercial trout feeds, containing high protein and lipid levels, are currently used in intensive culture; however, nutritional requirements of paddlefish are not currently known. A study was conducted examining the effects on growth, survival and fillet composition of juvenile paddlefish when fed commercial feeds differing in protein and lipid levels. Paddlefish larvae were first stocked in 14.0 m³ round tanks and fed trout starter feeds for 43 days until trained to accept a 1.6 mm pellet. Paddlefish juveniles of mean weight (±SE) 20±0.27 g were randomly stocked into six0.02 ha ponds at 12 500 ha^?1 and fed floating commercial trout or catfish (lower protein and lipid) feeds, twice daily (08:00 and 15:30 hours) for 92–97 days. At harvest, there were no significant differences in final weight, percent survival, specific growth rate , relative growth and feed conversion ratio between treatments, which averaged 223.6 g, 96.2%, 2.5% day^?1, 10.2 and 1.98 respectively. Surface feeding activity index was significantly higher in ponds supplied with catfish feed than in ponds supplied with trout feeds. Relative pellet buoyancy was not a factor in feeding activity. Fulton's condition factor averaged0.238, was not significantly different, and was similar to a reported value for extensively cultured paddlefish (zooplanktivore). There was no significant difference in liver somatic index between treatments, which averaged 1.91%. Percent protein and moisture of fillets averaged 14.9% and 80.9%, respectively, and were not significantly different between treatments. However, lipid content of fillets was significantly higher in paddlefish fed the trout feed (4.45%), compared with paddlefish fed the catfish feed (2.42%). Fillet lipid content for both treatments was higher than reported values for extensively cultured paddlefish. Percent abdominal fat was significantly higher (0.82%) in paddlefish fed the trout feed compared with paddlefish fed the catfish feed (0.52%). Results from this study indicate that paddlefish can be fed a commercial catfish feed labeled to contain 32% protein and 4.5% lipid without adverse effects on growth, survival and fillet composition, lowering production costs.     

A comparison of RNA concentrations and ornithine decarboxylase activity in Atlantic salmon (Salmo salar) muscle tissue,with respect to specific growth rates and diel variations

RNA concentrations and enzyme activities are often used as indices of recent growth in fish, but few studies have used both methods to assess the same fish. This study measured RNA concentrations and ornithine decarboxylase (ODC) activity in muscle tissue of juvenile Atlantic salmon (Salmo salar) to compare their usefulness for reflecting specific growth rates, and to determine whether either growth index was influenced by diel variations or time of feeding. Three groups (n = 54 in total) were fed 1.5% of body weight in commercial pellets in four feedings per day. One group was fed only in the morning (0830–1230h), one in the afternoon (1430–1830h), and one in the morning and afternoon (0830–1830h). At the end of ten days, fish were sampled at three times (0130h, 1030h, 1630h) over a single 24h period. Correlations to specific growth rate were slightly higher for RNA concentrations than for ODC activity, but both were highly significant. RNA and ODC activity were also correlated to each other. These results suggest that RNA concentration and ODC activity, taken together, can be used to monitor changes in both the numbers and activity of ribosomes. For RNA concentrations, there was no evidence of an effect of diel variations or the time of feeding. For ODC activity, a significant diel effect (all feed schedules combined) was detected if one non-growing fish was excluded from the analysis; activity of the enzyme was slightly higher in the sample taken at night (0130h) than in the two daytime samples. Contribution no. 8, Catamaran Brook Habitat Research Project