Population decline in the endemic Atlantic salmon (Salmo salar) in Kapisillit River,Greenland

Atlantic salmon, Salmo salar L., is found throughout the North Atlantic, with thousands of rivers having spawning populations. In Greenland, spawning is limited to one river in West Greenland, the Kapisillit River (64?N), and the salmon are limited to the lower few kilometres of the system. Using mark–recapture, it was estimated the parr population was 5,953 individuals, and that the population size has declined by 52% since 1959. In spite of this decline, parr density remains high, being between 0.26 and 0.62 parr/m². Using a historical age‐length key, an estimated minimum of 635 smolt will have descended to the sea in 2017. These will be caught in a fishery currently subject to no regulatory measures and fishing remains the most likely driver of the population decline. The genetically distinct population is endemic to Greenland, and managers should implement measures to conserve this genetic integrity and local biodiversity.     

Functions for estimating belowground and whole tree biomass of birch in Norway

Obtaining accurate estimates of national belowground and whole tree biomass is important to better understand the global carbon cycle and to quantify biomass stocks and changes. However, the availability of individual tree belowground biomass functions is generally low due to the difficulty of extracting roots. Allometric birch (Betula pubescens Ehrh. and Betula pendula Roth) biomass functions were derived from 67 trees for belowground and whole tree biomass using diameter at breast height (dbh) and height as the independent variables. The sampled trees spanned a dbh range from 4.0 to 45.5?cm and the functions provided a good fit to the data (RMSE?=?14.2?kg for BG and 40.7?kg for whole tree with dbh as predictor). Belowground, total stem, live crown, and dead branch biomass comprised 29.2%, 52.2%, 18.1%, and 0.5% of the whole tree biomass, respectively. Observed root-to-shoot ratios were between 0.21 and 0.88 with a mean of 0.42. Comparisons with existing belowground birch biomass functions from Fennoscandia indicated considerable differences in estimates between existing functions. The derived data-set for belowground birch biomass is the largest in Fennoscandia and the developed functions are likely the best available for estimating national birch biomass stock and stock change in Norway.     

Australian surveillance for avian influenza viruses in wild birds between July 2005 and June 2007

Objective   To identify and gain an understanding of the influenza viruses circulating in wild birds in Australia.
Design   A total of 16,303 swabs and 3782 blood samples were collected and analysed for avian influenza (AI) viruses from 16,420 wild birds in Australia between July 2005 and June 2007. Anseriformes and Charadriiformes were primarily targeted.
Procedures   Cloacal, oropharyngeal and faecal (environmental) swabs were tested using polymerase chain reaction (PCR) for the AI type A matrix gene. Positive samples underwent virus culture and subtyping. Serum samples were analysed using a blocking enzyme-linked immunosorbent assay for influenza A virus nucleoprotein.
Results   No highly pathogenic AI viruses were identified. However, 164 PCR tests were positive for the AI type A matrix gene, 46 of which were identified to subtype. A total of five viruses were isolated, three of which had a corresponding positive PCR and subtype identification (H3N8, H4N6, H7N6). Low pathogenic AI H5 and/or H7 was present in wild birds in New South Wales, Tasmania, Victoria and Western Australia. Antibodies to influenza A were also detected in 15.0% of the birds sampled.
Conclusions   Although low pathogenic AI virus subtypes are currently circulating in Australia, their prevalence is low (1.0% positive PCR). Surveillance activities for AI in wild birds should be continued to provide further epidemiological information about circulating viruses and to identify any changes in subtype prevalence.     

Remote sensing and forest inventories in Nordic countries – roadmap for the future

The Nordic countries have long traditions in forest inventory and remote sensing (RS). In sample-based national forest inventories (NFIs), utilization of aerial photographs started during the 1960s, satellite images during the 1980s, laser scanning during the 2000s, and photogrammetric point clouds during the 2010s. In forest management inventories (FMI), utilization of aerial photos started during the 1940s and laser scanning during the 2000s. However, so far, RS has mostly been used for map production and research rather than for estimation of regional parameters or inference on their accuracy. In recent years, the RS technology has been developing very fast. At the same time, the needs for information are constantly increasing. New technologies have created possibilities for cost-efficient production of accurate, large area forest data sets, which also will change the way forest inventories are done in the future. In this study, we analyse the state-of-the-art both in the NFIs and FMIs in the Nordic countries. We identify the benefits and drawbacks of different RS materials and data acquisition approaches with different user perspectives. Based on the analysis, we identify the needs for further development and emerging research questions. We also discuss alternatives for ownership of the data and cost-sharing between different actors in the field.     

Crocin and geniposide profiles and radical scavenging activity of gardenia fruits (Gardenia jasminoides Ellis) from different cultivars and at the various stages of maturation

The major components of gardenia fruits are geniposide and water soluble pigment crocins. In this study, we investigate crocins and geniposide profiles of gardenia fruits from different cultivars and at the various stages of maturation. DPPH scavenging activity of gardenia fruits from different cultivars and at the various stages of fruit maturation was also assayed. Quantitative determination of crocins in the gardenia at the various stages of maturation revealed a significant increase when ripening. However, geniposide content was negatively correlated with ripening stages. A significant difference was observed when comparing crocin content of different gardenia from various cultivars and geniposide content also showed marked variety. Current study indicated no relationship between crocin and geniposide content in gardenia fruits at the various stages of maturation and DPPH radical scavenging activity. Data showed that, although crocins feature markedly less DPPH scavenging activity than gardenia ethanol extract, total crocin content of gardenias collected in various cultivars correlate, to a certain degree, with radical scavenging effects of the Chinese traditional medicine (r = 0.75).     

Staying current by searching the veterinary literature

The body of knowledge in veterinary medicine and the biomedical sciences continues to grow logarithmically, and learning about new developments in veterinary medicine requires successful navigation of recently published literature worldwide. This article examines how veterinarians can use different types of automated services from databases and publishers to search the current and past literature, access articles, and manage references that are found.     

Analysis of pregerminated barley using hyperspectral image analysis

Pregermination is one of many serious degradations to barley when used for malting. A pregerminated barley kernel can under certain conditions not regerminate and is reduced to animal feed of lower quality. Identifying pregermination at an early stage is therefore essential in order to segregate the barley kernels into low or high quality. Current standard methods to quantify pregerminated barley include visual approaches, e.g. to identify the root sprout, or using an embryo staining method, which use a time-consuming procedure. We present an approach using a near-infrared (NIR) hyperspectral imaging system in a mathematical modeling framework to identify pregerminated barley at an early stage of approximately 12 h of pregermination. Our model only assigns pregermination as the cause for a single kernel's lack of germination and is unable to identify dormancy, kernel damage etc. The analysis is based on more than 750 Rosalina barley kernels being pregerminated at 8 different durations between 0 and 60 h based on the BRF method. Regerminating the kernels reveals a grouping of the pregerminated kernels into three categories: normal, delayed and limited germination. Our model employs a supervised classification framework based on a set of extracted features insensitive to the kernel orientation. An out-of-sample classification error of 32% (CI(95%): 29-35%) is obtained for single kernels when grouped into the three categories, and an error of 3% (CI(95%): 0-15%) is achieved on a bulk kernel level. The model provides class probabilities for each kernel, which can assist in achieving homogeneous germination profiles. This research can further be developed to establish an automated and faster procedure as an alternative to the standard procedures for pregerminated barley.     

Digestibility of protein and starch from sorghum (Sorghum bicolor) is linked to biochemical and structural features of grain endosperm

Although a principal source of energy and protein for millions of the world's poorest people, the nutritional value of sorghum (Sorghum bicolor L. Moench) is diminished because of low digestibility of grain protein and starch. To address this problem, we analyzed the properties of two sorghum lines that have a common pedigree but differ in digestibility. Consistent with results based on a ruminal fluid assay, the protein and starch of one line (KS48) was more thoroughly digested than that of the other (KS51) using in vitro assays based on pepsin and α-amylase. The indigestibility of KS51 relative to KS48 was shown to be due to (i) a greater abundance of disulfide-bonded proteins; (ii) presence in KS51 of non-waxy starch and the accompanying granule-bound starch synthase; and (iii) the differing nature of the protein matrix and its interaction with starch. The current findings suggest that each of these factors should be considered in efforts to enhance the nutritional value of sorghum grain.