Spatiotemporal patterns of mountain whitefish (Prosopium williamsoni) in response to a restoration of longitudinal connectivity

To examine the role of longitudinal connectivity on the spatial and temporal dynamics of mountain whitefish (Prosopium williamsoni), we quantified movement and population dynamics following installation of the Landsburg Dam fishway, Cedar River, WA, USA. Mountain whitefish is widely distributed, poorly studied and not the focus of restoration. Before the fishway, mountain whitefish were not observed above the dam. Here, we focus on snorkel counts collected at reach and mesohabitat (e.g. pools) scales over 11 summers on the 20‐km above‐dam segment following restoration. A camera within the ladder provided number, size and movement timing, thereby informing on behaviour and recolonisation. Segment‐scale abundance increased following fish passage reaching an asymptote in 7 years, and mountain whitefish were detected throughout the main stem in 10 years. Annual movement through the ladder increased over time and was positively correlated with instream abundance and discharge, but negatively correlated with water temperature. About 60% of fish movements occurred in spring and early summer, potentially for foraging opportunities. Reach‐scale abundance peaked between 7 and 10 km from the dam; deep, cool (~10.6 to 11.6°C) conditions characterised these reaches. At the mesohabitat scale, mountain whitefish detection increased with depth and velocity after accounting for distance from the dam. Our results show how restoring longitudinal connectivity allowed this nontarget species to colonise newly available habitat. Their response supports the critical roles of longitudinal connectivity and environmental conditions, that manifest at different spatial scales, in dictating how freshwater fish respond to habitat disturbance.     

Catch per unit effort standardization of the eastern Bering Sea walleye pollock (Theragra chalcogramma) fleet

A general linear model (GLM) was used to standardize catch per unit effort (CPUE) data for Alaska walleye pollock (Theragra chalcogramma) from the Bering Sea fleet for the years 1995–1999. Data were stratified temporally by year and season and spatially by area using either Alaska Department of Fish and Game (ADF&G) or National Marine Fisheries Service (NMFS) reporting areas. Four factors were used: vessel identification (ID) number, vessel speed, percentage of pollock by weight in the haul (a measure of targeting), and whether most of the haul took place before or after sunset. At least 29 combinations of main effects, quadratic covariates, and interactions were tested for each year/area/season stratum. GLM models explained from 31 to 48% of the total sums of squares. Vessel identification number was included in all models and explained the most variability. Of the remaining factors, the square of the percentage of pollock in the haul was included in most models, following an F-test to determine parsimony. Analysis of the vessel identification number coefficients indicated that larger vessels tended to have higher CPUEs; and that this relationship differed between dedicated catcher vessels and offshore catcher processors. Coefficient estimates and response surfaces generally indicated increased CPUEs with the percentage of pollock in the haul and showed mixed results with vessel speed. The vessel identification number incorporated most vessel characteristics, leaving vessel speed primarily as a fitting variable with less biological meaning. The year/area/season stratification procedure was found to be necessary due to the unbalanced design, which otherwise would have factor levels with no data in a large combined model. In addition, the stratification procedure reduced the variability in CPUE substantially.     

Impact of molybdenum on the copper status of red deer (Cervus elaphus)

AIM: To determine the effect of increasing molybdenum (Mo) intakes on serum and liver copper (Cu) concentrations and growth rates of grazing red deer (Cervus elaphus).

METHODS: Molybdenum- and Cu-amended fertilisers were applied to six 1.1-ha paddocks in a 3 × 2 design. Three levels of Mo were applied on two paddocks at each level in mid April (designated Day 1); levels were: none (control), 0.5 (medium) and 1.0 (high) kg Mo/ha as sodium molybdate. In late May (Day 39), two levels of Cu (none and 3.0 kg Cu/ha, as copper sulphate) were applied to each of the three levels of Mo-treated paddocks. Pasture Mo, Cu and sulphur (S) concentrations were measured at about fortnightly intervals. In late June (Day 74), ten 6-month-old red deer hinds were placed on the six experimental pastures, and serum and liver Cu concentrations were monitored at about monthly intervals for 102 days. The hinds were weighed on four occasions during the trial.

RESULTS: Mean pasture Mo concentrations on Day 56 were 2, 4.6 and 11.3 mg/kg dry matter (DM) for the untreated control, medium and high Mo-treated pastures, respectively. Pasture Cu concentration was 95 mg/kg DM on Day 59, 53 mg/kg DM on Day 90, and 9 mg/kg DM by Day 153. Mean S concentration in pasture was 3.3 (range 3.03–3.45) g/kg DM. Copper application to pasture had no significant effect on serum and liver Cu concentrations in deer so data were pooled within Mo treatment. Mean initial (Day 74) serum Cu concentration was 9.2 µmol/L. In the deer grazing the control Mo pasture, this increased to 10.3 µmol/L on Day 112, before decreasing to 6.4 µmol/L on Day 176. In deer grazing the medium and high Mo-treated pastures, mean serum Cu concentrations were 3.8 and 3.9 µmol/L, respectively, on Day 112, and 2.5 and 3.3 µmol/L, respectively, on Day 176. Mean initial (Day 74) liver Cu concentration was 131 µmol/kg fresh tissue. In the deer grazing the control Mo pasture, this declined to 120 and 52 µmol/kg on Days 112 and Day 176, respectively. In deer grazing the medium and high Motreated pastures, liver Cu concentrations decreased to 55 and 52 µmol/kg fresh tissue, respectively, on Day 112, and 21 and 20 µmol/kg fresh tissue, respectively, on Day 176. Mean serum and liver Cu concentrations were not significantly different between deer grazing the medium and high Mo-treated pastures, and were lower (serum p=0.003, liver p<0.001) in those groups than in deer grazing the untreated control pastures. No clinical signs of Cu deficiency associated with lameness were observed. Deer grazing pastures that had Mo concentrations >10 mg/kg DM had lower (p=0.002) growth rates (100 vs 130 g/day) than those on pastures containing <2.4 mg Mo/kg DM.

CONCLUSION: Increasing pasture Mo concentrations from 2 mg/kg DM to ≥4.6 mg/kg DM significantly reduced serum and liver Cu concentrations in grazing deer. Reduced growth rate was observed at pasture Mo concentrations >10 mg/kg DM.     

Protocol: Streamline cloning of genes into binary vectors in Agrobacterium via the Gateway® TOPO vector system

Background

Freezing tolerance is an important factor in the geographical distribution of plants and strongly influences crop yield. Many plants increase their freezing tolerance during exposure to low, nonfreezing temperatures in a process termed cold acclimation. There is considerable natural variation in the cold acclimation capacity of Arabidopsis that has been used to study the molecular basis of this trait. Accurate methods for the quantitation of freezing damage in leaves that include spatial information about the distribution of damage and the possibility to screen large populations of plants are necessary, but currently not available. In addition, currently used standard methods such as electrolyte leakage assays are very laborious and therefore not easily applicable for large-scale screening purposes.

Results

We have performed freezing experiments with the Arabidopsis accessions C24 and Tenela, which differ strongly in their freezing tolerance, both before and after cold acclimation. Freezing tolerance of detached leaves was investigated using the well established electrolyte leakage assay as a reference. Chlorophyll fluorescence imaging was used as an alternative method that provides spatial resolution of freezing damage over the leaf area. With both methods, LT₅₀ values (i.e. temperature where 50% damage occurred) could be derived as quantitative measures of leaf freezing tolerance. Both methods revealed the expected differences between acclimated and nonacclimated plants and between the two accessions and LT₅₀ values were tightly correlated. However, electrolyte leakage assays consistently yielded higher LT₅₀ values than chlorophyll fluorescence imaging. This was to a large part due to the incubation of leaves for electrolyte leakage measurements in distilled water, which apparently led to secondary damage, while this pre-incubation was not necessary for the chlorophyll fluorescence measurements.

Conclusion

Chlorophyll fluorescence imaging is an alternative method to accurately determine the freezing tolerance of leaves. It is quick and inexpensive and the system could potentially be used for large scale screening, allowing new approaches to elucidate the molecular basis of plant freezing tolerance.     

Waste potato dumps as sources of insects contaminated with soft rot coliform bacteria in relation to re-contamination of pathogen-free potato stocks

Summary Insects belonging to 12 genera in the Order Diptera, found at two large waste potato dumps in Scotland. were contaminated with soft rot coliform bacteria. In 1973, 5.7% and 3.2% and in 1974, 4.8% and 4.1% of the insects caught at each site yielded these organisms. The bacteria were identified mainly asErwinia carotovora var.carotovora, though some isolates wereErwinia carotovora var.atroseptica. Isolations from potato dump waste showed that at the time when fly activity was greatest the majority of soft rot coliforms in the waste wereE. carotovora var.carotovora, despite the fact that tubers originally forming the dumps were almost certainly infected mostly withE. carotovora var.atroseptica. Contaminated insects could readily transmit soft rot coliforms to damaged areas on the aerial parts of potato plants. It is suggested that potato stocks freed from these organisms by the stem cutting procedure could become re-contaminated by insects that disperse from potato dumps.

---

Zusammenfassung Zw?lf Arten von Insekten der Gattung Diptera, periodisch gesammelt auf zwei grossen Kartoffelabfallhaufen in Schottland, waren mit koliformen Nassf?ulebakterien kontaminiert (Tab. 2, 3, 5 und 6). Nur zwei der Arten galten vorher als m?gliche Ubertr?ger dieser Organismen. 1973 waren 4,6% der an den beiden Orten w?hrend der Saison gesammelten Insekten mit diesen Organismen behaftet, 1974 waren es 4,5%. Nicht weniger als 9,6% der Insekten waren bei einigen F?ngen im Jahre 1973 und 14,7% im Jahre 1974 Tr?ger von Nassf?uleErwinia sp. Die Fruchtfliegen (Parascaptomyza sp. undDrosophila spp.) waren 1973 die am h?ufigsten kontaminierten Insekten (Tab. 2 und 3). Diese Gruppe von Insekten war auch 1974 meistens kontaminiert, aber am h?ufigsten wurden die Bakterien vonScatophaga spp. undDelia spp. (Tab. 5 und 6) isoliert. Sowohl 1973 als auch 1974 wurdeErwinia carotovora var.carotovora (in der FolgeE. carotovora genannt) h?ufiger von den Insekten isoliert alsErwinia carotovora var.atroseptica (in der FolgeE. atroseptica genannt) (Tab. 1 und 4), obwohl die Knollen. die ursprünglich den Abfallhaufen ausmachten, fast sicher meistens mitE. atroseptica infiziert waren. Das Verh?ltnis vonE. carotovora zuE. atroseptica, isoliert von Insekten beider Haufen, war 1973 9,5∶1 (13,5∶1 und 5,5∶1 je Abfallhaufen) und 1974 3,8∶1 (2,7∶1 und 6,8∶1 für die beiden Orte).E. atroseptica wurde 1973 nur früh in der Vegetationszeit (vor dem 30. Juli) von den Insekten isoliert (Tab. 1), 1974 nur früh (vor dem 30. Juli) oder sp?t in der Vegetationszeit (nach dem 10. Oktober) (Tab. 4).E. carotovora dagegen konnte in beiden Jahren über die ganze Vegatationszeit isoliert werden (Tab. 1 und 4). Die Wiedergewinnung vonE. atroseptica von Insekten war mit dem Vorhandensein von frisch abgelagerten faulen Knollen zur Zeit. wenn die Insekten gesammelt werden. verbunden. EinzigE. carotovora wurde von Insekten isoliert. die zu einer Zeit gesammelt wurden, wenn auf den Abfallhaufen nur?lteres verfaulendes Material vorhanden war. Isolationen von faulenden Ueberresten, die 1975 dem Abfallhaufen entnommen wurden (Tab. 7), zeigten, dass sowohlE. carotovora als auchE. atroseptica in der Regel das ganze Jahr vorhanden waren.E. atroseptica herrschte früh im Jahr (Januar bis Juni) vor und an einem Ort auch sp?t in der Zeit der Musterentnahme (Oktober bis Dezember).E. carotovora war von Juni bis Oktober der am meisten isolierte Organismus. Das Vorherrschen vonErwinia carotovora var.atroseptica war mit dem Vorhandensein von frisch weggeworfenen Kartoffelknollen früh und sp?t in der Zeit der Musterentnahme verbunden.E. carotovora schien in den faulenden Knollen l?nger zu überleben und war der am meisten isolierte Organismus aus ?lterem verwesendem Material. Die Verh?ltniswerte vonE. carotovora zuE. atroseptica. isoliert von Insekten. waren h?her alsjene, die für das verfaulende Material aus den Abfallhaufen gefunden wurden. Es ist anzunehmen, dass die Insekten selbst einen selektiven Einfluss zu Gunsten vonE. carotovora ausüben. Von einem der Abfallhaufen gesammelten Insekten übertrugen im GlashausE. carotovora sogleich auf verletzte Kartoffelstengel. Man nimmt an, dass Kartoffelbest?nde. die mit Hilfe des Stengelschnittes von koliformen Nassf?uleerregern befreit wurden, durch Insekten, die von Kartoffelabfallhaufen kommen, wieder verseucht werden k?nnen.

---

Résumé 12 genres d'insectes appartenant à l'ordre des Diptères, capturés périodiquement en Ecosse. sur deux grands tas de déchets de pommes de terre se sont révélés être contaminés par des bactéries coliformes. agents de la pourriture molle (tableaux 2, 3, 5 et 6). Auparavant, seuls 2 genres avaient été cités comme vecteurs possibles de ces microorganismes. En 1973, 4.6% des insectes capturés aux 2 endroits, et en cours de saison. portaient ces parasites de la pomme de terre. En 1974. 4,5% étaient également contaminés. Pour l'ensemble de ces captures. il y a eu 9.6% des insectes en 1973. et 14.7% en 1974 qui portaientErwinia sp. Les mouches des fruits (Parascaptomyza etDrosophila spp.) ont été le plus fréquemment contaminés en 1973 (tableaux 2 et 3). Ce groupe d'insectes était également atteint en 1974. mais les bactéries on été plus fréquemment isolées à partir deScatophaga spp. etDélia spp. (tableaux 5 et 6). En 1973 et 1974.Erwinia carotovora var.carotovora (dans la suiteE. carotovora) a été plus fréquemment isolé de ces insectes qu'Erwinia carotovora var.atroseptica (dans la suiteE. atroseptica) (tableaux 1 et 4) bien que les tubercules constituant à l'origine les tas de déchets étaient certainement plus infestés parE. atroseptica. Le rapport entreE. carotovora etE. atroseptica pour les isolements sur insectes provenant des deux endroits a été 9,5/1 (respectivement 13.5/1 et 5.5/1 pour chacun des tas de déchets) en 1973 et 3,8/1 (2,7/1 et 6,8/1) en 1974.E. atroseptica n'a été isolé que t?t dans l'année (avant le 30 juillet) en 1973 (tableau 1) et 1974 (tableau 4) elle l'a été précocement (avant le 30 juillet) ou tardivement (après le 10 octobre).E. carotovora, par contre, l'a été durant toute la saison pendant les deux années (tableuaux 1 et 4) l'isolement d'E. atroseptica est lié au moment de la capture des insectes, à la présence de tubercules nouvellement pourris lors de la mise en tas. Par contreE. carotovora a été isolé à partir des insectes capturés sur les tas où il n'y avait que du matériel présentant des pourritures plus agées. En 1975, des isolements effectués sur les tas de déchets ont montré qu'E. carotovora etE. atroseptica étaient habituellement présents toute l'année (tableau 7).E. atroseptica était prédominante en début de saison (de janvier à juin). II n'y a eu qu'un seul cas où on l'a observé plus tardivement durant la période d'échantillonage (octobre à décembre).E. carotovora a été le principal organisme isolé de juin à octobre. La prédominance d'E. atroseptica était associée à la présence de tubercules nouvellement entreposés précocement et tardivement durant la période d'échantillonage.E. carotovora semblait subsister plus longuement dans les tubercules pourris et était le principal organisme isolé à partir de matériel altéré le plus agé. Les rapportsE. carotovora surE. atroseptica obtenus à partir des isolements effectués sur insectes ont été plus élévés que ceux trouvés à partir du matériel pourri en provenance des tas. Les auteurs suggèrent que les insectes euxmêmes peuvent exercer une action sélective en faveur d'E. carotovora. Les insectes collectés à partir d'un des tas peuvent transmettre facilementE. carotovora aux pommes de terre se trouvant en serre et dont les tiges sont endommagées. Les auteurs suggèrent que les lots de pommes de terre indemnes de bactéries coliformes grace au procédé de bouturage peuvent être à nouveau recontaminé à partir des tas de déchets de pommes de terre et par l'intermédiaire des insectes.

     

Sources of petroleum hydrocarbons in urban runoff

In an effort to provide a better understanding of the sources of petroleum hydrocarbons in urban runoff, petroleum products as well as probable source materials were analyzed for hydrocarbons and trace metals and then compared to urban runoff samples from four different land use areas. The petroleum products considered were No. 2 and No. 6 fuel oils, used and virgin crankcase oils, and gasoline. Source materials included street dust, roadside soil, roadside vegetation, and atmospheric fallout; and the land use categories were commercial, residential, interstate highway, and industrial areas. The samples were compared on the basis of hydrocarbon (saturated and aromatic) and trace metal (Cd, Pb, Mn, Cu, Fe, Zn) loadings and distributions. Results indicated that the hydrocarbon content in runoff at all four land use sites originated primarily from used crankcase oil, with a small amount of No. 2 fuel oil detected at the industrial site. Only a small portion of the crankcase oil component came from the sources surveyed, and the majority of this oil probably came from: (1) oil drops within the driving lanes on the road surfaces or deposits in parking areas, and/or (2) direct dumping of waste crankcase oil down storm drains.     

Performance of finishing beef steers in response to anabolic implant and zilpaterol hydrochloride supplementation

Our objectives were to evaluate the dose/payout pattern of trenbolone acetate (TBA) and estradiol-17β (E(2)) implants and feeding of zilpaterol hydrochloride (ZH) on performance and carcass characteristics of finishing beef steers. A randomized complete block design was used with a 3 × 2 factorial arrangement of treatments. British × Continental steers (n = 168; initial BW = 362 kg) were blocked by BW and allotted randomly to 42 pens (7 pens/treatment; 6 pens/block; 4 steers/pen). The main effects of treatment were implant [no implant (NI); Revalor-S (REV-S; 120 mg of TBA + 24 mg of E(2)); and Revalor-XS (REV-X; 200 mg of TBA + 40 mg of E(2))] and ZH (0 or 8.3 mg/kg of DM for 20 d with a 3-d withdrawal before slaughter). Blocks were split into 2 groups, and block groups were fed for either 153 or 174 d. No implant × ZH interactions were noted for cumulative performance data. Overall, shrunk final BW (567, 606, and 624 kg for NI, REV-S, and REV-X, respectively), ADG (1.25, 1.51, and 1.60 kg), and G:F (0.14, 0.16, and 0.17) increased (P < 0.05) as TBA and E(2) dose increased. Implanting increased (P < 0.05) DMI, but DMI did not differ (P > 0.10) between REV-S and REV-X (8.8 for NI vs. 9.4 kg/d for the 2 implants). From d 1 to 112 of the feeding period, implanting increased (P < 0.05) ADG and G:F, but REV-S and REV-X did not differ (P > 0.10). From d 112 to end, ADG increased by 19% (P < 0.05) and G:F was 18% greater (P < 0.05) for REV-X vs. REV-S. Carcass-adjusted final BW (29-kg difference), ADG (0.2-kg/d difference), and G:F (0.02 difference) were increased (P < 0.05) by ZH, but daily DMI was not affected by feeding ZH. Hot carcass weight was increased (P < 0.05) by ZH (19-kg difference) and implant, with REV-X resulting in the greatest response (HCW of 376 for NI vs. 404 and 419 kg for REV-S and REV-X, respectively; P < 0.05). An implant × ZH interaction (P = 0.05) occurred for dressing percent (DP). Without ZH, implanting increased DP, but DP did not differ (P > 0.10) between REV-X and REV-S. With ZH, REV-X increased (1.7%; P < 0.05) DP vs. NI and REV-S. Marbling score, 12th-rib fat, and KPH were not affected (P > 0.10) by implant or ZH. Overall, treatment increased steer performance and HCW in an additive fashion, suggesting different mechanisms of action for ZH and steroidal implants. In addition, a greater dose of TBA + E(2) and extended payout improved steer performance and HCW.     

Effect of Geotrichum candidum protein substitution in pelleted fish feed on the growth of rainbow trout (Salmo gairdneri Rich.) and on utilization of the diet

Three experiments were conducted with rainbow trout to determine if Geotrichum candidum GC single cell protein could replace 100, 75 or 50% of fish meal in a pelleted diet. When the fish meal was completely replaced by GC the fish growth was retarded after 3 weeks of the experiment. With the larger fish (individual weight 47–54 g) in the short trial there were significant differences between fish fed the control diet (fish meal) and those fed the 75% substitution of GC diet. The most remarkable differences in fish growth appeared in a 42-day trial with small fish (5 g individual weight) when fish groups fed diets with 0.50 and 75% replacement gave significantly different results (P < 0.05), being 93,9, 46.6 and 34.2% gain, with feed coefficients of 1.49, 2.77 and 3.67, respectively. With large fish fed diets with 0,50 and 75% GC replacement, apparent digestibility of protein was 64.7, 68.2 and 37.5%, but fat digestibility was 79.5, 91.1 and 81.0%, respectively. No significant differences in amounts of free plasma amino acid (PAA) were found between rainbow trout fed diets with 0 or 50% substitution, but there was a marked decrease in PAA in the group fed the diet with 75% GC substitution. Analysis of chosen heavy metals was made on diets, fish and faeces, and Cu in particular was found not to be accumulated in the fish body.