Further contributions to the genetic aspect of congenital sensorineural deafness in Dalmatians

Sensorineural deafness is a common congenital disorder in Dalmatians and is genetically transmitted. Different modes of inheritance have been proposed and the objective of this study was to study these by segregation analyses using maximum likelihood procedures. Data from 33 complete Dalmatian families were collected and data from 56 single Dalmatians added. This resulted in a total of 575 dogs with 357 known phenotypes. All dogs were clinically evaluated and electrophysiologically tested with brainstem auditory evoked responses.The prevalence of deafness was 16.5% (9.4% unilaterally deaf, 7.1% bilaterally deaf). Females were 4.4% more affected than males but this difference was not significant. Within the same litter, different phenotypic expressions of deafness occurred, which suggested different expressions of the disease. In addition, two data sets were analysed: the first included normal, uni- and bilaterally deaf dogs, the second had normal and deaf Dalmatians. We found that a recessive allele at a single biallelic major locus fitted our data best, although an incomplete penetrance of the recessive homozygotes was observed.     

Molecular and Pathogenicity Characteristics of Phytophthora nicotianae Responsible for Root Necrosis and Wilting of Pepper (Capsicum annuum L.) in Tunisia

Isolates of Phytophthora from pepper, produced in Tunisia, were characterised according to molecular and pathogenicity criteria. Polymerase chain reaction amplification of the ITS1 region in the ribosomal DNA resulted in different sized fragments. The pepper isolates and P. nicotianae yielded a fragment of 310bp that distinguished it from P. capsici with a fragment of 270bp. The ribosomal RNA gene amplicons of both internal transcribed spacers and the 5.8 S of the pepper Phytophthora and P. nicotianae were digested with 8 endonucleases. The patterns generated, with the 2 enzymes that cut, were identical for both taxa. This molecular analysis corroborated the morphological and biological characteristics and suggests strongly that the isolates of Phytophthora from pepper belong to the species P. nicotianae. Inoculation of pepper, tomato, eggplant and tobacco plants with the isolates of P. nicotianae from pepper showed they were highly pathogenic on pepper but not on tobacco, while their pathogenicity was weak on tomato and eggplant and was associated with atypical symptoms not observed in the field. These pathogenicity tests suggest that pepper isolates of P. nicotianae are particularly adapted to their host and may thus constitute a forma specialis of P. nicotianae.     

Comparison of ammonia and greenhouse gas emissions during the fattening of pigs, kept either on fully slatted floor or on deep litter

Five successive batches of fattening pigs were raised, each during a four month period, on a totally concrete slatted floor in one experimental room and on straw based deep litter in another. The rooms were automatically ventilated to maintain a constant ambient temperature. Available floor space was of 0.75 m² per pig kept on the slatted floor and 1.20 m² per pig kept on the deep litter. With this last system, about 46 kg of straw were supplied per pig throughout a fattening period. The slurry pit was emptied and the litter removed after each batch. Once a month, the emissions of ammonia (NH₃), nitrous oxide (N₂O), methane (CH₄), carbon dioxide (CO₂), and water vapour (H₂O) were measured continuously for 6 consecutive days by infra-red photoacoustic detection.The performance of the animals was not significantly different according to the floor type.Gaseous emissions from pigs raised on the slatted floor and on the deep litter were, respectively, 6.2 and 13.1 g per pig per day for NH₃, 0.54 and 1.11 g per pig per day for N₂O, 16.3 and 16.0 g per pig per day for CH₄, 1.74 and 1.97 kg per pig per day for CO₂ and 2.48 and 3.70 kg per pig per day for H₂O. Except for the CH₄ emissions, all the differences were significant (P < 0.001). Thus, pig fattening on deep litter releases nearly 20% more greenhouse gases than on slatted floor, with 2.64 and 2.24 kg of CO₂-equivalents, respectively (P < 0.001). Whatever the floor type, emissions increased from the beginning to the end of the fattening periods by about 5 times for NH₃, 4 times for N₂O, 3 times for CH₄ and 2 times for CO₂ and H₂O. Correlation coefficients between CO₂-emissions and H₂O, NH₃ and CH₄ emissions were, on average for both floor types, 0.82, 0.77 and 0.74, respectively.Although rearing pigs on straw generally has a good brand image for the consumer, this rearing system produces more pollutant gases than keeping pigs on slatted floors.     

Fragrance heritability in Hybrid Tea roses

Most of the Hybrid Tea roses that are sold as cut flowers are non-scented, despite the long-standing interest of the perfume industry to rose scent. In the absence of comprehensive knowledge on the genetic and biochemistry of volatile biosynthesis in roses, we decided to characterize a Hybrid Tea progeny obtained from parents that emit very different scents. First, we identified the 11 most abundant volatile compounds synthesized by the progeny, and a short review is given for each one that describes their occurrence in the genus Rosa, in the parents and the studied progeny. We have then used statistical analysis on the distribution of volatiles among individual progeny members to unveil the laws of segregation of the scent traits in this cross. As a general rule, the quantity and quality of volatile compounds was lower in the progeny members. Variations in scent quality were mostly linked to the quantity of monoterpenes that was present. Offsprings emitting a pleasant fragrance were, in practice, found to be rare.     

Genetic aspects of idiopathic epilepsy in Labrador retrievers

A study was undertaken to define the mode of inheritance of idiopathic epilepsy in Labrador retrievers in Switzerland. Seven hundred and ninety-two pedigree certificates from a population of healthy and epileptic dogs from 11 generations were evaluated. Forty-four different families (giving a total of 55 epileptic dogs) were included. Most patients showed generalised grand mal seizures and the onset was within one to three years in 41 per cent. Males were no more affected than females and the gender ratio between epileptic and control animals was not significantly different (P>0·05). Additionally, there was no difference in average total inbreeding coefficient between both sexes, or with respect to age of onset of seizures. The increased manifestation of seizures in some subpopulations and the repeated occurrence in different families of the same sires suggested that there was a genetic basis for the condition in the breed. Results of pedigree analyses and from use of the binomial test support the hypothesis of a polygenic, recessive mode of inheritance. However, only an objective test-mating programme is likely to define the exact mode of inheritance.     

Are Phenological Observations Sufficient to Estimate the Quality of Seed Crops from a <Emphasis Type="Italic">Eucalyptus grandis</Emphasis> Open-pollinated Seed Orchard? Consequences for Seed Collections

Reproductive phenology was observed over three years in a Eucalyptus grandis seed orchard in Madagascar to determine the impact of geographic differences of parental selections on the expected genetic composition of seed crops. Pollen flow (observed pollen cloud) was deduced from a paternity assignment based on sampling from one year’s seed production. The two approaches were used to verify whether knowledge of phenology is sufficient to predict the genetic quality of the seeds collected. Despite the high flowering level, with a constant cycle over three years, the results demonstrated wide reproductive phenological differences associated with the parents’ origin, suggesting putative pollination disequilibrium. From both observed and expected pollen clouds, the results showed preferential mating among different provenances, which has consequences for seed crop composition. Phenological observations, which can be made inexpensively, can be used to promote methods of effective seed orchard management in order to improve the genetic quality of seeds.     

Charcoal affects early development and hormonal concentrations of somatic embryos of hybrid larch

Embryogenic tissue of hybrid larch (Larix x marschlinsii Coaz) was multiplied on Medium M (modified MSG medium supplemented with the plant growth regulators (PGRs) 2,4-dichlorophenoxyacetic acid (2,4-D; 9 microM) and N-6-benzyladenine (2.25 microM)). After 1 week, cultures were transferred to either MSG lacking PGRs (Medium C-) or MSG lacking PGRs but supplemented with 1% activated charcoal (Medium C+). Embryos were sampled after 1 week on Medium M, C- or C+. Embryos were analyzed by ELISA for abscisic acid (ABA), abscisic acid-glucose ester, 2,4-D, indole-3-acetic acid (IAA), indole-3-aspartate (IAAsp), zeatin (Z), zeatin riboside (ZR), isopentenyladenine (iP) and isopentenyladenosine (iPA). Transfer of embryos to Medium C+ reduced the embryo concentrations of 2,4-D and iPA, but resulted in elevated concentrations of IAA, IAAsp, ABA, Z, ZR and iP. Charcoal reduced 2,4-D concentrations of embryos by an order of magnitude greater than PGR-free medium alone. Charcoal affected embryo concentrations of five of the eight PGRs quantified. Use of either C+ or C- medium as part of the maturation protocols also affected germination and plantlet establishment of the embryos. A 1-week treatment on Medium C+ positively influenced plantlet establishment and generally reduced variability during both germination and plantlet establishment.     

A commentary on current approaches to forest population genetics

Some of the most frequently chosen approaches to forest population genetics as reflected in the present volume are discussed, and some topics possibly deserving more attention are addressed. Among the first are studies of self-fertilization as a characteristic of forest tree mating systems, gene markers as indicators of adaptive or phylogenetic differentiation, and methodological aspects of the measurement of genetic differentiation. The latter mainly concern generalizable methods of analysis and the involvement of gene markers in the determination of mating systems, detection of mechanisms of frequency dependent selection, and the incorporation of genetic profiles (characteristics of frequency distributions of genetic types) into population genetic analysis.     

Improving the design of long-term monitoring experiments in forests: a new method for the assessment of local soil variability by combining infrared spectroscopy and dendrometric data

Key message

Near- and mid-infrared spectroscopy allows for the detection of local patterns of forest soil properties. In combination with dendrometric data, it may be used as a prospective tool for determining soil heterogeneity before setting up long-term forest monitoring experiments.

Context

Forest soils and stands generally exhibit higher spatial heterogeneity than other terrestrial ecosystems. This variability needs be taken into account before setting up long-term forest monitoring experiments to avoid multiple interactions between local heterogeneity and the factors tested in the experiment.

Aims

We hypothesized that raw near- and mid-infrared spectra can be used as an integrated proxy of a large set of soil properties. The use of this method, in combination with dendrometric data, should provide a quick and cost-effective tool for optimizing the design of experimental forest sites.

Methods

We assessed the local soil heterogeneity at 11 experimental sites in oak and beech stands, which belong to a new forest long-term ecological research (LTER) network. We used near- and mid-infrared spectroscopy in soil and litter samples. The spectra were subjected to principal components analyses (PCA) to determine the intra-site variability of the soil and litter layers.

Results

Based on mapped PCA coordinates and basic dendrometric data, it was possible to design the experiment and minimize the interactions between the treatment layout and the tested variables. The method was validated with chemical analyses of the soil. No interaction was detected at the set-up of the experiment between the treatment layout and chemical soil properties (C, N, C/N ratio, pH, CEC, Al, Mg, P₂O₅, Fe, Mn, Na, and K).

Conclusion

Near-infrared (NIR) and mid-infrared (MIR) spectroscopy is a useful tool for characterizing the overall heterogeneity of soil chemical properties. It can be used without any preliminary calibration. In combination with dendrometric data, it provides a reliable method for optimizing LTER plots in different types of ecosystems.

     

Morphological and physiological responses of beech (Fagus sylvatica) seedlings to grass-induced below ground competition

We examined morphological and physiological responses of beech (Fagus sylvatica L.) seedlings to grass-induced below ground competition in full-light conditions. Two-year-old beech seedlings were grown during two growing seasons in 160-l containers in bare soil or with a mixture of five grass species widely represented in semi-natural meadows of central France. At the end of the second growing season, beech seedlings in the presence of grass showed significant reductions in diameter and height growth, annual shoot elongation, and stem, root and leaf biomass, but an increase in root to shoot biomass ratio. Grasses greatly reduced soil water availability, which was positively correlated with daily seedling diameter increment. Beech seedlings seemed to respond to water deficit by anticipating stomatal closure. There was evidence of competition for nitrogen (N) by grasses, but its effect on seedling development could not be separated from that of competition for water. By labeling the plants with 15N, we showed that beech seedlings absorbed little N when grasses were present, whereas grasses took up more than 97% of the total N absorbed in the container. We conclude that, even if beech seedlings display morphological and physiological adaptation to below ground competition, their development in full-light conditions may be strongly restricted by competition from grass species.