Pathogenicity determinants in smut fungi revealed by genome comparison

Biotrophic pathogens, such as the related maize pathogenic fungi Ustilago maydis and Sporisorium reilianum, establish an intimate relationship with their hosts by secreting protein effectors. Because secreted effectors interacting with plant proteins should rapidly evolve, we identified variable genomic regions by sequencing the genome of S. reilianum and comparing it with the U. maydis genome. We detected 43 regions of low sequence conservation in otherwise well-conserved syntenic genomes. These regions primarily encode secreted effectors and include previously identified virulence clusters. By deletion analysis in U. maydis, we demonstrate a role in virulence for four previously unknown diversity regions. This highlights the power of comparative genomics of closely related species for identification of virulence determinants.     

Variances of tracheid lengths in tropical pines from central Africa

Summary Individual tracheid lengths were measured in macerated tissue samples of Pinus merkussii Jungh. and de Vries, P. kesiya Royle ex Gordon (syn. P. khasya Royle) and P. patula Schiede and Deppe. The sample trees were selected from stands of different ages, treatments and sites in central Africa.A sampling unit of 50 tracheids, measured for convenience on two microscope slides, was chosen on the basis of an earlier study. The variation in individual tracheid length and the variation of within-slide variance was studied by means of analysis of variance and variance components. This indicated the nunber of samples required in the different sampling categories to give maximum sampling efficiency. Sampling categories included both random factors (individual tracheids, number of slides, radii in discs) and fixed factors (annual rings, tree classes, thinning treatments, etc.).While large effects were attributable to fixed factors more than half the total variation was explained by random factors. The effect of the number of slides was rarely important and two slides need be used only to facilitate the location of the required number of tracheids and to provide a check on operator consistency. The sample unit of 50 tracheids can detect differences in tracheid length of 0.20 ... 0.34 mm thus confirming the routine used in this laboratory as a practical and meaningful procedure.Laboratory work was carried out in Kitwe, computing at Oxford. Paper published with permission of Professor of Forest Science, Oxford and Director, Agricultural Research Council of Zambia.     

Vapor pressures of solid hydrates of nitric Acid: implications for polar stratospheric clouds

Thermodynamic data are presented for hydrates of nitric acid: HNO(3).H(2)O, HNO(3).2H(2)O, HNO(3).3H(2)O, and a higher hydrate. Laboratory data indicate that nucleation and persistence of metastable HNO(3).2H(2)O may be favored in polar stratospheric clouds over the slightly more stable HNO(3).3H(2)O. Atmospheric observations indicate that some polar stratospheric clouds may be composed of HNO(3).2H(2)O and HNO(3).3H(2)O. Vapor transfer from HNO(3).2H(2)O to HNO(3).3H(2)O could be a key step in the sedimentation of HNO(3), which plays an important role in the depletion of polar ozone.     

Functional links between Aβ toxicity, endocytic trafficking, and Alzheimer's disease risk factors in yeast

Aβ (beta-amyloid peptide) is an important contributor to Alzheimer's disease (AD). We modeled Aβ toxicity in yeast by directing the peptide to the secretory pathway. A genome-wide screen for toxicity modifiers identified the yeast homolog of phosphatidylinositol binding clathrin assembly protein (PICALM) and other endocytic factors connected to AD whose relationship to Aβ was previously unknown. The factors identified in yeast modified Aβ toxicity in glutamatergic neurons of Caenorhabditis elegans and in primary rat cortical neurons. In yeast, Aβ impaired the endocytic trafficking of a plasma membrane receptor, which was ameliorated by endocytic pathway factors identified in the yeast screen. Thus, links between Aβ, endocytosis, and human AD risk factors can be ascertained with yeast as a model system.     

Fossilized nuclei and germination structures identify Ediacaran "animal embryos" as encysting protists

Globular fossils showing palintomic cell cleavage in the Ediacaran Doushantuo Formation, China, are widely regarded as embryos of early metazoans, although metazoan synapomorphies, tissue differentiation, and associated juveniles or adults are lacking. We demonstrate using synchrotron-based x-ray tomographic microscopy that the fossils have features incompatible with multicellular metazoan embryos. The developmental pattern is comparable with nonmetazoan holozoans, including germination stages that preclude postcleavage embryology characteristic of metazoans. We conclude that these fossils are neither animals nor embryos. They belong outside crown-group Metazoa, within total-group Holozoa (the sister clade to Fungi that includes Metazoa, Choanoflagellata, and Mesomycetozoea) or perhaps on even more distant branches in the eukaryote tree. They represent an evolutionary grade in which palintomic cleavage served the function of producing propagules for dispersion.     

Predicting non‐native fish dispersal under conditions of climate change: case study in England of dispersal and establishment of pumpkinseed Lepomis gibbosus in a floodplain pond

Predictions of future climate change include shifts in patterns of precipitation, evapotranspiration and water run‐off, resulting in increased periods of drought as well as variability and intensity of rainfall events. In the United Kingdom, the non‐native North American sunfish, pumpkinseed Lepomis gibbosus (L.), is expected to benefit from these changes. We examine how hydrological variability induced by predicted changes in climate will affect the dispersal and spread of pumpkinseed in England by: (i) determining the relationship between discharge regime and pumpkinseed propagule pressure; (ii) examining a newly‐established pumpkinseed population following a flood event in 2007; and (iii) comparing the growth and life‐history traits of this new population with fish collected from the source population to demonstrate how the pumpkinseed's life‐history plasticity contributes to its success as a coloniser. Using Bayesian modelling, we determined that the number of pumpkinseed escapees is likely to increase with increasing discharge. The newly‐established pumpkinseed population showed fast juvenile growth, early age at maturity and small size at maturity. These traits differed significantly from the source population, specifically total length (TL) means at ages 1 and 2 were significantly greater in the new population, whereas TL at age 4 was significantly greater in the source population, and a significantly higher proportion of mature females were found at smaller size classes in the newly established pumpkinseed population. This study demonstrates the potential link between hydrological variability (current and future) and the dispersal of non‐native pumpkinseed, leading to the establishment of new populations.     

Recycling of water for irrigation: Persistence of enteroviruses in sewage effluent and natural waters receiving the effluent

A virological analyses of a sewage treatment plant which provided chlorinated, activated sludge treated sewage effluent to irrigate a complete two-year crop of sugarcane was made. The raw, the activated sludge treated and the chlorinated sewage effluent, as well as streams and a harbor receiving sewage effluents were concentrated by either the polymer two-phase, PE-60, Al(OH)₃, protamine sulfate, or cellulose membrane method and assayed for human enteric viruses. Viruses were recovered from 100% (11/11) of the raw sewages tested at concentrations ranging from 27 to 19 000 PFU l^?1 while 76% (13/17) of the activated sludge treated effluent was positive at concentrations ranging from 7 to 5222 PFU l^?1. After chlorination, 58% (31/53) of the samples was positive for virus at concentrations ranging from 2 to 750 PFU l^?1. Human enteroviruses were also isolated from shallow flowing streams at distances up to 3 mi (5 km) from the closest known sewage effluent discharge point and from a harbor approximately 0.5 mi (0.8 km) from the point of sewage discharge entering the harbor. The viruses most often isolated were echovirus 7, coxsackievirus B-4, B-5 and poliovirus 1, 2, and 3. These results indicate that although activated sludge treatment plus chlorination remove approximately 90% of the virus from the raw sewage, the final treated sewage effluent, which is normally discharged into a stream and in this experimental study to irrigate sugarcane, still contains a significant concentration of infectious viruses. Furthermore, the recovery of enteroviruses from waterways at points distant from the sewage treatment plants indicates that sewage-borne viruses persist in natural water environment. The significance of enteric viruses in waters accessible to the public and used for irrigation purposes remains to be determined.     

Hybridization in Australian Freshwater Crayfish—Production of All-Male Progeny

Abstract.— In freshwater crayfish aquaculture high densities can result from uncontrolled reproduction. Hence some farmers manually sex yabbies Cherax albidus and stock only mate crayfish in farm dams or ponds. Although male-only yabby populations produce an estimated 70% increase in gross income, hand sexing is time consuming and prone to error. A hybridization experiment using freshwater crayfish from the yabby species complex, collected from geographically isolated regions throughout Australia, revealed a hybrid between Cherax rotundus females and C. albidus males which consistently produces only male progeny. This has been confirmed in nine crosses of the same two species. The reciprocal cross of C. albidus females × C. rotundus males produces both male and female progeny. The consistent production of only male progeny by hybridization has not been recorded previously for a crustacean.     

Use of reflex indicators for measuring vitality and mortality of the snow crab (Chionoecetes opilio) in captivity

The snow crab (Chionoecetes opilio) is one of the most important commercial crabs in the world; it is heavily exploited in Atlantic Canada, Alaska, the Sea of Japan and the Barents Sea. Catches in the Barents Sea north of Norway have increased dramatically in the last decade. Most of the world's catch is processed, frozen and exported overseas. However, recently there has been considerable interest in exporting live snow crab, particularly in Norway. The stress of capture and live transport can result in significant mortalities. In order to establish a live export industry for snow crab, the welfare of the animal must be monitored throughout all the steps of the live transport process. In this study the reactions of snow crabs exposed to increasing periods of air exposure were measured in terms of reflex indicators, incidence of mortality, blood lactate levels and blood protein and haemocyanin. Although this is not a specific live holding or live transport process the aim was to test the suitability of reflex indicators to reflect vitality (stress) and not just to predict mortality. This would be compared with traditional blood biochemistry techniques for measuring crustacean stress. The study demonstrated that the reflex index score (RIS) is suitable to assess the vitality of snow crab. Longer air exposure periods render higher mortality rates and less vital individuals. The authors believe using vitality reflex indicators would be a suitable way of measuring crab welfare during the live holding and transport process.