A GIS-based plant prediction model for wetland ecosystems

An existing non-spatial model for the prediction of response of wetland plant species on ecological factors has been transformed into a GIS-based prediction model which produces spatial output at the landscape scale. The input, spatial patterns of the ecological factors, were constructed with geostatistical spatial interpolation (kriging). With this GIS-based model the spatial patterns of presence and absence of 78 wetland plant species are predicted for an area with wetlands in the Netherlands of approximately 500 square kilometers. The GIS-based model has been validated, and the estimated uncertainty of the input has been propagated through the model. At the species level the output shows spatially coherent and non-random patterns. The validation is affected by the propagation of input errors through the model. The number of valid predictions declines approximately 10–20% when 95% confidence intervals are used in the validation. This study shows that it is feasible to use a geostatistical interpolation method to construct spatial patterns of ecological factors on a landscape scale and to use these patterns as input for a GIS-based prediction model. The added uncertainty on the input values however, affects the number of valid predictions of the model.     

Regional scale analysis of denitrification in north temperate forest soils

Large scale analyses of biogeochemical processes are necessary for understanding anthropogenic effects on global climate and environmental quality. Regional scale estimates of denitrification from forest soils in southern lower Michigan USA were produced by stratifying the region into landscape experimental units using soil texture and natural drainage classes, and extrapolating data to larger areas using a geographic information system (GIS). Previous landscape-scale research established relationships between soil texture and drainage and denitrification and quantified annual denitrification N loss in nine soil texture/drainage groups. All forest soils within the region (64 series) were assigned to one of these nine groups based on their texture and drainage characteristics and were assigned an annual denitrification N loss value. A regional estimate of denitrification was produced by multiplying the areal extent of each of the nine soil groups by their annual denitrification N loss value. Loam-textured soils underlie 47% of the regional forest and accounted for 73% of the forest denitrification. Sandy soils were found under 44% of the regional forest but produced only 5% of the regional denitrification. Clay loam soils underlie 9% of the regional forest and produced 22% of the denitrification. Annual denitrification N loss for the region was estimated as 1.4×10⁷ kg N/yr. We used denitrification enzyme activity (DEA) as a proxy for annual denitrification N loss to determine if the relationship between denitrification and soil texture and natural drainage that we observed at the landscape scale held up at the regional scale. DEA was measured in 22 soils across the region and was strongly related to soil texture and natural drainage (r²=0.61), suggesting that extrapolation of data from the landscape to the regional scale was justified.     

Cryopreservation of ram semen: Manual versus programmable freezing and different lengths of equilibration

The aim of our study was to examine effects of the length of semen equilibration as well as two freezing techniques on ram sperm post-thaw quality. The ejaculates of Wallachian sheep rams (n = 12) were collected by an electro-ejaculation, equilibrated in a Triladyl® (0, 2, 4, 6, and 8 h) containing glycerol and egg yolk and frozen by programmable freezing (PF) or manual freezing (MF). After thawing, sperm samples were subjected to the motility (computer-assisted sperm analysis [CASA]), viability (SYBR-14/PI), and fertilizing ability (FA) (in vitro penetration/fertilization test on bovine oocytes) assays. It was found that the equilibration of 6 h (E-6) ensured higher post-thaw sperm motility and progressive movement compared with other lengths tested, irrespective of a freezing technique. The E-6 sperm viability did not differ between PF and MF but was lower (P < 0.05) than control. Sperm FA (E-6) was similar in PF (60.44%) and MF (62%) but slightly lower than in fresh (72.8%). Our data demonstrate that the use of MF was comparable with PF, which can be applied in the field conditions without need in a piece of cost-expensive equipment, which can greatly benefit the gene bank of animal genetic resources.     

CORRELATIONS AMONG ULTRASONOGRAPHIC MEASUREMENTS OF OPTIC NERVE SHEATH DIAMETER,AGE, AND BODY WEIGHT IN CLINICALLY NORMAL HORSES

Early diagnosis of high intracranial pressure (ICP) is critical for minimizing progressive brain injury due to reduced cerebral perfusion. In people, detecting enlargement of the optic nerve sheath diameter (ONSD) by transpalpebral ultrasonography has been found to be an accurate test for high ICP. Aims of this prospective, observational, cross‐sectional study were to test hypotheses that (1) ultrasonographic measurement of ONSD would be repeatable in horses, (2) have acceptable interobserver agreement, and (3) would be correlated with age and body weight. The sample population included 48 horses without clinical signs of high ICP and with varying ages and body weights. Two observers independently performed ONSD measurements in both eyes. All measurements ranged from 2.6 to 6.5 mm. The mean difference of repeated measures within observers was ≤0.1 mm and the coefficients of variation ranged from 5.0% to 8.8%. The mean difference of measures between observers was ≤0.2 mm. After correcting for performing multiple tests, no significant rank correlation (all r < 0.4 [absolute value]) was detected between ONSD and age or body weight. However, we observed smaller ONSD in foals versus adults (all P ≤ 0.002). In the foals, all observed measures of rostrocaudal and dorsoventral ONSD were <5 mm. In the adults, all observed measures of rostrocaudal and dorsoventral ONSD were ≤6.5 mm. Findings indicated that ultrasonographic ONSD measurement is a feasible test for use in horses of varying ages and sizes. Further investigation of this ultrasonographic measure as a clinical test for horse with suspected high ICP is warranted.     

Investigation of a possible chain of Streptococcus suis infection in a pig breeding community using PCR-based genotyping

Streptococcus (S.) suis plays an important role in pig breeding causing invasive diseases such as meningitis and polyarthritis. Herd problems with Streptococcus suis are common in many pig farms and are frequently characterised by disease outbreaks. In this context, it is often important to identify chains of infection, e.g. between a farrow-to-wean and a grower farm. In the following case report a possible chain of infection among the different farms of a farrow-to-finish system was investigated. In two grower units herd problems with S. suis were present; the mortality was higher than 5 %. It appeared likely, that the streptococci causing these problems were transmitted from a single farrow-to-wean unit to the two different grower farms. In the respective farms swabs were taken from different healthy animals and, in the case of the grower farms, also from the infected animals. Genotypic profiling of strains by a multiplex-PCR and AFLP typing method revealed that two different S. suis pathotypes were responsible for the herd problems. Both pathotypes could not be detected in the farrow-to-wean farm.Thus, a chain of infection originating from the farrow-to-wean farm appeared unlikely. The multiplex PCR was in this case sufficient to elucidate the described problem.