Evolution of the molecular machines for protein import into mitochondria

In creating mitochondria some 2 billion years ago, the first eukaryotes needed to establish protein import machinery in the membranes of what was a bacterial endosymbiont. Some of the preexisting protein translocation apparatus of the endosymbiont appears to have been commandeered, including molecular chaperones, the signal peptidase, and some components of the protein-targeting machinery. However, the protein translocases that drive protein import into mitochondria have no obvious counterparts in bacteria, making it likely that these machines were created de novo. The presence of similar translocase subunits in all eukaryotic genomes sequenced to date suggests that all eukaryotes can be considered descendants of a single ancestor species that carried an ancestral "protomitochondria."     

The effect of tillage practice,input level and environment on the grain yield of winter wheat in the Czech Republic

The response of winter wheat grain yield to four variants of treatment (two input levels, combined with either conventional or reduced tillage) was tested over six seasons at three locations. These experiments with 10 and 12 winter wheat varieties were analysed within three experimental series. The environmental (location and season) effects on grain yield were large in all combinations of input level and tillage type, and the varieties responded differentially to both season and location. However, there was no varietal response either to the tillage system used, or to the level of nitrogen (and other inputs) supplied. The high input reduced tillage system (surface stubble-ploughing to a depth of 8–10 cm) resulted in all series in significantly higher grain yields than the equivalent conventional tillage system. The reduced tillage system combined with high input level delivered a yield advantage for all of the wheat varieties tested.     

PIN proteins perform a rate-limiting function in cellular auxin efflux

Intercellular flow of the phytohormone auxin underpins multiple developmental processes in plants. Plant-specific pin-formed (PIN) proteins and several phosphoglycoprotein (PGP) transporters are crucial factors in auxin transport-related development, yet the molecular function of PINs remains unknown. Here, we show that PINs mediate auxin efflux from mammalian and yeast cells without needing additional plant-specific factors. Conditional gain-of-function alleles and quantitative measurements of auxin accumulation in Arabidopsis and tobacco cultured cells revealed that the action of PINs in auxin efflux is distinct from PGP, rate-limiting, specific to auxins, and sensitive to auxin transport inhibitors. This suggests a direct involvement of PINs in catalyzing cellular auxin efflux.     

Rise and fall of the Beringian steppe bison

The widespread extinctions of large mammals at the end of the Pleistocene epoch have often been attributed to the depredations of humans; here we present genetic evidence that questions this assumption. We used ancient DNA and Bayesian techniques to reconstruct a detailed genetic history of bison throughout the late Pleistocene and Holocene epochs. Our analyses depict a large diverse population living throughout Beringia until around 37,000 years before the present, when the population's genetic diversity began to decline dramatically. The timing of this decline correlates with environmental changes associated with the onset of the last glacial cycle, whereas archaeological evidence does not support the presence of large populations of humans in Eastern Beringia until more than 15,000 years later.     

Structures and Biologic Activity of Chitonoidosides I,J, K,K1 and L-Triterpene Di-, Tri- and Tetrasulfated Hexaosides from the Sea Cucumber Psolus chitonoides

Five new triterpene di-, tri- and tetrasulfated hexaosides (chitonoidosides I (1), J (2), K (3), K₁ (4) and L (5)) were isolated from the Far-Eastern sea cucumber Psolus chitonoides, collected near Bering Island (Commander Islands) from a depth of 100–150 m. The structural variability of the glycosides concerned both the aglycones (with 7(8)- or 9(11)-double bonds) and carbohydrate chains differing from each other by the third sugar residue (Xyl or sulfated by C-6 Glc) and/or by the fourth—terminal in the bottom semi-chain—residue (Glc or sulfated by C-6 MeGlc) as well as by the positions of a sulfate group at C-4 or C-6 in the sixth—terminal in the upper semi-chain—residue (MeGlc). Hemolytic activities of these compounds 1–5 against human erythrocytes as well as cytotoxicity against human cancer cell lines, HeLa, DLD-1 and HL-60, were studied. The hexaosides, chitonoidosides K (3) and L (5) with four sulfate groups, were the most active against tumor cells in all the tests. Noticeably, the sulfate group at C-4 of MeGlc6 did not decrease the membranolytic effect of 5 as compared with 3, having the sulfate group at C-6 of MeGlc6. Erythrocytes were, as usual, more sensitive to the action of the studied glycosides than cancer cells, although the sensitivity of leukemia promyeloblast HL-60 cells was higher than that of other tumor cells. The glycosides 1 and 2 demonstrated some weaker action in relation to DLD-1 cells than against other tumor cell lines. Chitonoidoside K₁ (4) with a hydroxyl at C 25 of the aglycone was not active in all the tests. The metabolic network formed by the carbohydrate chains of all the glycosides isolated from P. chitonoides as well as the aglycones biosynthetic transformations during their biosynthesis are discussed and illustrated with schemes.     

Preventive and therapeutic efficacy of halofuginone-lactate against Cryptosporidium parvum in spontaneously infected calves: a centralised, randomised, double-blind, placebo-controlled study

The preventive and therapeutic efficacy of halofuginone-lactate (HFL) against Cryptosporidium parvum was evaluated in a study conducted from November 2004 to March 2005 on a dairy farm in Central Bohemia, Czech Republic, using 260 spontaneously infected calves. HFL (0.1 mg/kg/day) was administered orally for 7 days to 1-day-old and 8-day-old calves, respectively. In both treated groups the drug significantly, and in almost the same manner, decreased the intensity of diarrhoea (P<0.001) and faecal oocyst count (P<0.001) when compared to corresponding placebo groups. The only difference between both treated groups was the time of onset of symptoms of the infection. Over time, the clinical pattern of cryptosporidiosis in the animals treated at 8-14 days of age was similar to that seen in the groups receiving the placebo. In contrast, infection in the preventively treated group peaked about 10 days later but with the same intensity. The results of this study confirm the anticryptosporidial activity of HFL in calves, but show that the outcome of infection following preventive treatment is comparable to that observed in calves treated after the onset of symptoms.     

Redistribution of organic pollutants in river sediments and alluvial soils related to major floods

Background, Aims, and Scope  More frequent occurrence of stronger floods in Europe as well as in other parts of the world in recent years raises major concern about the material damages, but also an important issue of contamination of the affected areas through flooding. The effects of major floods on levels and distribution of contamination with hydrophobic organic pollutants were examined from the continuous set of data for floodplain soils and sediments from a model industrial area in the Czech Republic where a 100-year flood occurred in 1997. The goal of this study was to evaluate the risk related to contamination associated with such extensive natural events and characterize the spatial and temporal distribution and dynamics of pollutants related to a major flooding shortly after the floods and also in the time period several years after floods. Methods  Sediments and alluvial soils from fourteen sites each were repeatedly sampled during the period from 1996 until 2005. The sampling sites represented five regions. Collected top-layer sediment and soil samples were characterized and analyzed for hydrophobic organic pollutants PCBs, OCPs and HCB using GC-ECD and PAHs using a GC-MS instrument. Spatial and temporal differences as well as the relative distribution of the pollutants were examined in detail by statistical analysis including multivariate methods with special emphases placed on the changes related to floods. Results  The organic pollutants levels in both alluvial soils and sediments exceeded the safe environmental limits at numerous sites. Pollutants concentrations and relative distribution as well as organic carbon content in both sediment and floodplain soils were significantly affected by the flooding, which resulted in a decrease of all studied contaminants in sediments and significant rise of the PAH pollution in the flooded soils. There was a unique and highly conserved PAH pattern in soils regardless of the floods and greater changes in PAH pattern in sediments related to floods. The relative distribution of individual PAHs reflected a combustion generated PAH profile. PAH levels in the river sediments rose again at the sites with continuous sources several years after floods. Discussion  The results showed different dynamics of PAHs and PCBs during the floods when PAHs were redistributed from the sediments to alluvial soils while PCBs have been washed out of the study regions. The data reveal longer contamination memory and consistent contamination pattern in soils, whereas sediments showed more dynamic changes responding strongly to the actual situation. The stable PAH pattern within the regions also indicates that a relative amount of all compounds is comparable across the samples and, thus, that the sources at different sites have similar character. Conclusions  Sediments have the potential to function as a secondary source of contamination for the aquatic ecosystem, but also for the floodplain soils and other flooded areas. The floods served as a vector of PAHs contamination from sediments to soils. The reloading of river sediments in time, namely with PAHs, due to present sources increases their risk as a potential source in the next bigger flood event both to the downstream river basin and affected alluvial soils. Recommendations and Perspectives  The results stress the importance of including the floodplain soil contamination in the risk assessment focused on flood effects. Floodplain soils have stable long-term environmental memory related to contamination levels, pattern and distribution, whereby they can provide relevant information on the overall contamination of the area. The sediments will continue to serve as a potential source of contaminants and alluvial soils as the catchment media reflecting the major flood events, especially until effective measures are taken to limit contamination sources. ESS-Submission Editor: Dr. Henner Hollert (Hollert@uni-heidelberg.de) This article is openly accessible!     

Determination of total content of phenolic compounds and their antioxidant activity in vegetables--evaluation of spectrophotometric methods

This research studies in detail the contents of phenolic compounds determined by the Folin-Ciocalteu reagent and the antioxidant activities determined by the TEAC (Trolox equivalent antioxidant capacity), DPPH (using diphenyl-p-picrylhydrazyl radical), and FRAP (ferric reducing antioxidant power) methods, and their correlations for used standards with these methods (catechine, gallic acid, caffeic acid, ferulic acid, Trolox, ascorbic acid, and ferrous sulfate) and extracts from several species of commonly consumed vegetables were studied in detail. The comparison of absolute values of absorption coefficients for used standards and for individual methods allows one to choose optimal common standards for methods to be compared. The procedures applied for the same sets of the extracts using identical calibration procedures and common standards allowed better comparison of the results obtained by the TEAC, DPPH, and FRAP methods. The values of content of phenolic substances and total antioxidant activity of the sets of samples correlate very well for all used methods. The very high values of antioxidant activity were found in intensely colored vegetables (red cabbage, red onion, etc.), and the values were very low in watery vegetables such as potato, marrow, and cucumber.