A new single nucleotide polymorphism in CAPN1 extends the current tenderness marker test to include cattle of Bos indicus, Bos taurus, and crossbred descent

The three objectives of this study were to 1) test for the existence of beef tenderness markers in the CAPN1 gene segregating in Brahman cattle; 2) test existing CAPN1 tenderness markers in indicus-influenced crossbred cattle; and 3) produce a revised marker system for use in cattle of all subspecies backgrounds. Previously, two SNP in the CAPN1 gene have been described that could be used to guide selection in Bos taurus cattle (designated Markers 316 and 530), but neither marker segregates at high frequency in Brahman cattle. In this study, we examined three additional SNP in CAPN1 to determine whether variation in this gene could be associated with tenderness in a large, multisire American Brahman population. One marker (termed 4751) was associated with shear force on postmortem d 7 (P < 0.01), 14 (P = 0.015), and 21 (P < 0.001) in this population, demonstrating that genetic variation important for tenderness segregates in Bos indicus cattle at or near CAPN1. Marker 4751 also was associated with shear force (P < 0.01) in the same large, multisire population of cattle of strictly Bos taurus descent that was used to develop the previously reported SNP (referred to as the Germplasm Evaluation [GPE] Cycle 7 population), indicating the possibility that one marker could have wide applicability in cattle of all subspecies backgrounds. To test this hypothesis, Marker 4751 was tested in a third large, multisire cattle population of crossbred subspecies descent (including sire breeds of Brangus, Beefmaster, Bonsmara, Romosinuano, Hereford, and Angus referred to as the GPE Cycle 8 population). The highly significant association of Marker 4751 with shear force in this population (P < 0.001) confirms the usefulness of Marker 4751 in cattle of all subspecies backgrounds, including Bos taurus, Bos indicus, and crossbred descent. This wide applicability adds substantial value over previously released Markers 316 and 530. However, Marker 316, which had previously been shown to be associated with tenderness in the GPE Cycle 7 population, also was highly associated with shear force in the GPE Cycle 8 animals (P < 0.001). Thus, Marker 316 may continue to be useful in a variety of populations with a high percentage of Bos taurus backgrounds. An optimal marker strategy for CAPN1 in many cases will be to use both Markers 316 and 4751.     

The growth and nitrogen economy of rice under sprinkler and flood irrigation in South East Australia

Summary Dry-seeded rice (Oryza sativa L., cv. Calrose) was subjected to 4 irrigation treatments — continuous flood (CF) and sprinkler irrigation at frequencies of one (S1 W), two (S2W) and three (S3W) applications per week — commencing 37 d after 50% emergence (DAE). The amount of water applied was calculated to replace water lost by pan evaporation. Urea (120 kg N ha^–1) was applied in a 1:1 split 36 and 84 DAE, and there were also unfertilized controls for each irrigation treatment. Amounts of nitrate (NO ₃ ^– ) in the soil were very low throughout the growing season in all treatments, despite regular periods of draining which lasted for up to 7 d in SlW. In all irrigation treatments, the majority of the fertilizer nitrogen (N) was located in the top 20 mm of soil. After each application of fertilizer, levels of mineral N in CF declined rapidly, while levels in S3W and S1W remained high for 1–2 weeks longer. The poor growth of sprinkler-irrigated rice was not due to lower amounts of mineral N in the soil. The greater persistence of fertilizer N in the sprinkler-irrigated treatments was probably due to reduced root activity near the soil surface because of frequent periods of soil drying in between irrigations. Net mineralization of soil N in the unfertilized sprinkler-irrigated treatments was reduced by about half compared with CF.On average, the quantity of water applied (1.2–1.4 × EP) to the sprinkler-irrigated treatments appeared to be sufficient to meet the evapotranspiration demands of the crop, except possibly around flowering time. However, the plants may have suffered from moisture stress in between irrigations. Soil matric potential data at 100 mm suggested little water stress in the sprinkler-irrigated treatments during the vegetative stage, consistent with the similar tiller and panicle densities in all irrigation treatments. However, the crop was stunted and yellow and leaf rolling was observed in the sprinkler-irrigated treatments during this period. Soil matric potential data at 100 mm indicated considerable water stress in S1W beyond the commencement of anthesis, and in S2W during grain filling, consistent with the reduced floret fertility and grain weight in those treatments.     

Three genes of miraculin-like proteins from Nicotiana benthamiana with dissimilar putative structures show highly similar patterns of induction following bacterial and fungal infections

Expression of three Nicotiana benthamiana miraculin-like protein genes, NbMLP1, NbMLP2 and NbMLP3, showed almost identical responses to wounding, an incompatible interaction with Pseudomonas syringae pv. tabaci and compatible interactions with P. syringae pv. tabaci, Colletotrichum destructivum or Colletotrichum orbiculare. However, only NbMLP1 expression responded to exogenous methyl jasmonate or ethylene. None exhibited expression in healthy leaves and stems, and all showed highest expression in seeds, except for NbMLP1, which had highest expression in roots. NbMLP1, NbMLP2 and NbMLP3 were in different subfamilies of miraculin-like protein sequences of N. benthamiana and Nicotiana tabacum. Subfamilies correlated well with predicted features of the reactive-site loop potentially affecting the bond that could react with serine proteinases. Despite considerable predicted structural diversity that might affect biological activity, the apparently coordinated expression of these genes to pathogen attack may reflect the need to produce diverse proteinase inhibitors to act against a potentially broad range of secreted microbial proteinases during basal resistance to pathogens.     

Isotope-edited nuclear magnetic resonance: novel methodologies for investigating metabolism

While the use of NMR and stable isotopes in metabolism studies is hardly new, it is only recently that isotope-edited NMR spectroscopy has been applied in kinetic studies of glyphosate metabolism of soil microbes. NMR can detect multiple species simultaneously and non-destructively, yielding valuable information on structural identification of metabolites. T riple R esonance I sotope ED ited spectroscopy (TRIED), [²H]NMR, and [²H–¹³C] INEPT (I nsensitive N ucleus E nhancement through P olarization T ransfer) are three isotope-edited techniques which have been used in combination to examine the microbial degradation of glyphosate (N-phosphonomethylglycine). Using ¹³C- and ¹⁵N-labeled glyphosate, TRIED can detect multiple metabolites in crude matrices at submicrogram levels, an improvement over earlier techniques where milligrams were needed. It can detect 500 nanograms of ¹³C–¹⁵N-labeled compound in a crude sample (1 : 1400 mass ratio), only a few hours work being required. [²H]NMR and [²H–¹³C]INEPT were also used as complementary techniques to further examine metabolites whose ¹³C–¹⁵N bond has been cleaved. The three-isotope-edited methods produced results consistent with both radioactivity and HPLC analyses. Accordingly, we are able to detect minute levels of metabolites in the presence of complex mixtures, minimizing the costs and time of sample purification. ©1999 Society of Chemical Industry     

Effects of adjuvants on the performance of a novel powdery mildew fungicide, 1-(4-chlorobenzyl)-4-phenylpiperidine

The effects of adjuvants on the performance of a dispersible concentrate formulation (DCI) of a novel powdery mildew fungicide, 1-(4-chlorobenzyl)-4-phenylpiperidine (I) were investigated. The method involved assessment, under glasshouse conditions, of the therapeutic (curative) control of infections of powdery mildew (Erysiphe graminis DC f.sp. hordei Marchal) on barley (Hordeum vulgare, L.) eight to nine days after spray application to plants that had been inoculated one day prior to spraying. The results from the first trial showed that marked improvements (∽five-fold) in the performance of DCI could be obtained by the spray tank addition of some types of surfactant adjuvants and a series of further trials investigating a wide range of adjuvants was conducted. Nonylphenol, alkylamine and alcohol ethoxylates varying in mean ethylene oxide content between 5 and 20 moles were highly effective. There were indications that optimum performance enhancements were obtained with these surfactants containing between 5 and 10 moles ethylene oxide. Lower enhancements, sometimes only marginal, were obtained from trisiloxane, phosphate ester, propylene oxide, alkylamine-propylene oxide and castor oil ethoxylates and also alkyl polyglucoside biosurfactants. Negligible adjuvant enhancements were observed with emulsifiable paraffinic/naphthenic and rape seed oils, though slightly better enhancements were seen with an emulsifiable transmethylated rape seed oil and, interestingly, larger enhancements with an emulsifiable lipophilic alcohol. A final trial identified the alcohol ethoxylate, ‘Dobanol’ 91-6, as the most effective adjuvant and that its optimum application rate under glasshouse conditions was 250 g ha^-1. This information will be used to guide the design of field trials. © 1997 SCI     

Effects of conservation tillage drills on soil quality indicators in a wheat–oilseed rape rotation: organic carbon,earthworms and water-stable aggregates

The effects of five conservation tillage drills with crop residue levels covering between 17% and 79% of the soil, and tillage depths ranging from 25 to 200 mm, were examined over 3 years. The tillage systems ranged from a relatively disruptive Farm System to a Low Disruption system, with three intermediate treatments labelled Sumo DTS, Claydon and Mzuri. The study involved field sites on a clay or clay loam soil, where winter wheat and oilseed rape were grown in rotation. In the clay field, the Mzuri and Low Disruption treatments, which produced the highest residue coverage, showed the greatest increase in surface total soil organic carbon (1.1 and 0.48 Mg C ha⁻¹, respectively) between years 1 and 3. The least disruptive tillage system also resulted in the highest density of earthworms (181–228 m⁻²), and the most disruptive system produced the lowest densities (75–98 m⁻²). In the third year, the least disruptive system also showed a higher proportion of water-stable aggregates (29.8%) than the other treatments (22.7%–25.3%). Linear regressions showed positive relationships of both soil organic carbon and earthworm density with surface residue cover, and of the proportion of water-stable aggregates with soil organic carbon.     

Capturing genetic variability and selection of traits for heat tolerance in a chickpea recombinant inbred line (RIL) population under field conditions

Chickpea is the most important pulse crop globally after dry beans. Climate change and increased cropping intensity are forcing chickpea cultivation to relatively higher temperature environments. To assess the genetic variability and identify heat responsive traits, a set of 296 F_8–9 recombinant inbred lines (RILs) of the cross ICC 4567 (heat sensitive) × ICC 15614 (heat tolerant) was evaluated under field conditions at ICRISAT, Patancheru, India. The experiment was conducted in an alpha lattice design with three replications during the summer seasons of 2013 and 2014 (heat stress environments, average temperature 35 °C and above), and post-rainy season of 2013 (non-stress environment, max. temperature below 30 °C). A two-fold variation for number of filled pods (FPod), total number of seeds (TS), harvest index (HI), percent pod setting (%PodSet) and grain yield (GY) was observed in the RILs under stress environments compared to non-stress environment. A yield penalty ranging from 22.26% (summer 2013) to 33.30% (summer 2014) was recorded in stress environments. Seed mass measured as 100-seed weight (HSW) was the least affected (6 and 7% reduction) trait, while %PodSet was the most affected (45.86 and 44.31% reduction) trait by high temperatures. Mixed model analysis of variance revealed a high genotypic coefficient of variation (GCV) (23.29–30.22%), phenotypic coefficient of variation (PCV) (25.69–32.44%) along with high heritability (80.89–86.89%) for FPod, TS, %PodSet and GY across the heat stress environments. Correlation studies (r = 0.61–0.97) and principal component analysis (PCA) revealed a strong positive association among the traits GY, FPod, VS and %PodSet under stress environments. Path analysis results showed that TS was the major direct and FPod was the major indirect contributors to GY under heat stress environments. Therefore, the traits that are good indicators of high grain yield under heat stress can be used in indirect selection for developing heat tolerant chickpea cultivars. Moreover, the presence of large genetic variation for heat tolerance in the population may provide an opportunity to use the RILs in future-heat tolerance breeding programme in chickpea.